Clc04G12560 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G12560
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pentose-5-phosphate 3-epimerase
Location	ClcChr04: 25996384 .. 26000253 (-)
RNA-Seq Expression	Clc04G12560
Synteny	Clc04G12560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAAAAGAAGACATTTGAATGAATGTGTCTCTCTCTCCCATGTCAGCAAAGATAGAAGAAGGCCAACCATTGCCGATAAGCAATCCCTGAATTCTGGTGGTACGCCCACCATCCTCATCCACTCATTTCTTTTACCCATTTTTTTTCTAATTAATTGCTTTTTCTTTCAATTTCGTTATTTAGATTTGGTAGTCTTTACATTATTCATGCTGGAGGGAACGAAAAGGGAAGAACAAATTATCATTCTTCGAATCCTTACCTAACCTTTGAAACCCAGAAAAGGGTTCCTCAGTGGAAGTCCAAAATGGCTGTTGCTTCGTTATGTCAATCCACTATGCAATCCAAGGTCAGTGGGTTTATCGGAGGTCTCACTTTTCAGAAACCACCTCTCTCTCAACCTTCATCTCTTACCTTTTCGAGGTAATTTGATTCATGGGGTCCCCTTTTTCTTGTTTCTCTCTTTGATTTCTTTAAGCTTTCTTAGATCGCTGTGGTTATCAATTTCTCAAACTTTGTAAATCCTTCACTGTAAATGAACTGGAAATTGTGTTTTTTACATTGCCCTGAAATTGAGAATTCCTAATTAATTTTAGTTTGTTTGTTGGCAATTGAGAGGTAGCTTTGACTTCCCTTTTGTCTTCTGATTCATAATCGTGGTATGAGTTGATAGCTTAGCTCTGTCTCTTTGAAATTTTTAGATTGAACTTATGAGCTTTAGGGATTTCTGTATTTTTGACAAACTCATTAGTTCTTGTGGAGTTGAGTATGAAACAAATTATATGGTGTGATTTATCCAATTTTCAGGCAAAAATCTGCCAAAATTTTTATGGATTTTGATTTAGTAGAGTTCATTTTGAATAATTTTTATAATGAAGGTAGTTGCTAGCCACTTATTTTGGAAAACATTTTTAGCGTTTAACAATGGGTTCCATACTTTAGTTGGAATTTATTGTCGGCATGCCACCTCCTAGGTTAGATAGGGTAATATGGGGCAGGGTGTGACTATTTTTCTTTCTTGTCTATTTGATTTGCATGTTTTGCAAGACCTTTGTATATGGAATAAGTCCCCTCTCTTTACATTGGAGTAGAGTAGATTTTGTGACACCCGTTACGGTTTTTTGGTTCCACTTTCAACTCAGCTACTTAAAGCATTGCTGAGTGTCTTCCATTTTGTACTTCTATTTGCTTATGTCCTTTCCGAGAGGATGGACTTAGAGAATGAAGAACTATTTGGTATCCAATGTGCTCCCATTTACTTTCTGTTTCTAATTTTCTAGGAGGAGGTTCAGAAATGTGGTGAAAGCTTCATCTCGGGTTGATAAATACTCAAAATCTGATATCATCGTCTCTCCCTCAATCCTCTCTGCTAACTTTGCCAAATTGGGAGAGCAGGTTCTGTTTAGTGCTCTGATCTCTCCATTATTTTAGTTTGTTTTGTTGTGCACTTCCAAGTCATTTATCAAATTGCTTTGAAGATTTATGCAGATGGGTTTTTAGATTAAAATTCTCATCTTTTGTAGGTCAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGCCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGGTATGCTTCTTTCTCATTTTGATTCTCTTTGGTGCTGGCAGTGATTCTTAAGTACTTCTATTAACATAAACTCAAAGCATTATAGATGATTGTGGAGCCTGAGCAGCGTGTGCCAGACTTTATAAAGGCTGGTGCCGATATTGTCAGTGTTCATTGTGAGCAATCTTCCACAATCCATCTGCACCGCACCGTTAATCAAGTAAGATTTCCTCTGCTGTGATGTAGTACAGAATTAGGTGGTGCATGTTTTCAATCCTAATAAGATATATTTCTTAATGAAGAAAAAATTGCAAATCCATCATGTTCTTTAGAATATTGTGGAACTGTATATGTTCCTACCGTGCTTAAGTAAAAATTCCTATGTGATGCAAAATGAAATTAGCTGCATGTTTTTAGTTTTAGTTTTATTTTTTATTTTTTGAAAAAATCTCGATAAGACAAAACTCAAAAATCAACAAGCTCTTTAGTATAAAACAAAAGCTGAAGGGTTCCATCTGTTCTTATTTTCTGAAATTTTGTGGATTGCAAAGGATAGTCATATTGTTGAAAACTGCTTTTATAGGCGTTCATAGCTGTTTTCTTGGTTCCCTTTTGCTTCATTCTAGAAAGGATTGCTTGTTGACTTGCCAATGAAAATGGCTTTCTTGTTGGACGGAATTCATGCATTTTAAGGAAATATCATATATTCATAATGGCCATTCCTTCAAATATGATTCAGATAAAAAGTCTTGGAGCTAAAGCTGGAGTGGTTCTAAATCCTGCTACTTCACTCAGCACAATTGAATATGTCCTTGACGGTGACTCCCTCTCTCTCCCCCTATATAATTGCTGAGACGTTCCACTGTGAAGATTATTAAAGAGTTGGAATCTATGGGAATGATATTATCTGTTGAGGGTTTTGGGATTCTGTGGTGTTATTTGAAAGAAATTTGACACAAATAATGATAGAAAAATGACGAACAAAGTACGGTTGATTGGAGGTTAAGAGTGGATATCATTAATCATACCCAAAAGAAGATGATAGGAAAATATGCATCGGTATTTGTGTGAACAAAATGAGAGGAATTAACGATGCCCTTTCCTTGTTTACAACTTTGCAGTTGTTGATTTGGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTAAAGAAAATCTCAGATTTAAGAAGATTATGTGCTGAAAAGGTACAATTTCCCATTTTGCTTGCTTTTTCTATAACTTTTTCCTGATGCACTTCTCTTTTCCAGCATTACTAGGTTTACAAACCTATTGGCAATTCATTTGCTTTGTTGCAGGGAGTTAACCCATGGATCGAGGTGGACGGTGGAGTCGGTCCAGCCAATGCATACAAGGTGCATACAATAATATTTCCTGAAACACCAACTTTTTTTTTACATGAGTTCCTAAAGCAAGTTTTCGATCGCTGCCATGCTTGCAGGTAATTGAGGCTGGAGCCAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCTGAGGGTATGATCCATACATTTGCTTCCGCTCCTCCCTCCGACAAATGTTTAGAACATTTTAACTAAATTATCCCTTCGAATTGATTCTTTAACAGCCATAAAAGGAATCAAAACAAGCAAAAGGCCGGAGGCAGTTCCAGTATGAAAGTGACTTGTACAAGATCTGAGTTGTTTCAGTTGATAGTATTGTTGTGTTATTCATTGCCATGTAAGTTGTCCCCCTCACACAATGTCTTTGTTGTTTCGATTGATGGAGAACAGCTACGATTCTGTACGATCTTCGACATCTCCTACTATGATGCCACCTGATCTTACCACTTGTTTTCTTCTAAATGCAGAGAGAATCTCCAACTGCATAGGTAGCTGAACATTTTATTCTTCAAGCTCTTATCTCAGCCATGGTTGCTACCTCCACAGTTTTATTCCTTGTGAAAAGAAGCCTGTAGATTGCCACTTGAAGATTTGTTATGTACTATAACATACCAGAACAAATTTAGTACAAATTCAATAATATGAACTTGGGAGCAATAATATTCTACTTTCCGTATTGATTGTCCAATAAAAGCTTCTTAGGACATTTTAAGAACATGTTTTAAGAATAAAGAAAACAAATAGTTAATTTGCGTCTGTAATTTTAAGGAAACTTCTATGTGGTTATGGATTAGAAATGTAATCTC

mRNA sequence

GTCAAAAAGAAGACATTTGAATGAATGTGTCTCTCTCTCCCATGTCAGCAAAGATAGAAGAAGGCCAACCATTGCCGATAAGCAATCCCTGAATTCTGGTGATTTGGTAGTCTTTACATTATTCATGCTGGAGGGAACGAAAAGGGAAGAACAAATTATCATTCTTCGAATCCTTACCTAACCTTTGAAACCCAGAAAAGGGTTCCTCAGTGGAAGTCCAAAATGGCTGTTGCTTCGTTATGTCAATCCACTATGCAATCCAAGGTCAGTGGGTTTATCGGAGGTCTCACTTTTCAGAAACCACCTCTCTCTCAACCTTCATCTCTTACCTTTTCGAGGAGGAGGTTCAGAAATGTGGTGAAAGCTTCATCTCGGGTTGATAAATACTCAAAATCTGATATCATCGTCTCTCCCTCAATCCTCTCTGCTAACTTTGCCAAATTGGGAGAGCAGGTCAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGCCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCTGAGCAGCGTGTGCCAGACTTTATAAAGGCTGGTGCCGATATTGTCAGTGTTCATTGTGAGCAATCTTCCACAATCCATCTGCACCGCACCGTTAATCAAATAAAAAGTCTTGGAGCTAAAGCTGGAGTGGTTCTAAATCCTGCTACTTCACTCAGCACAATTGAATATGTCCTTGACGTTGTTGATTTGGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTAAAGAAAATCTCAGATTTAAGAAGATTATGTGCTGAAAAGGTTTACAAACCTATTGGCAATTCATTTGCTTTGTTGCAGGGAGTTAACCCATGGATCGAGGTGGACGGTGGAGTCGGTCCAGCCAATGCATACAAGGTAATTGAGGCTGGAGCCAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCTGAGGCCATAAAAGGAATCAAAACAAGCAAAAGGCCGGAGGCAGTTCCAGTATGAAAGTGACTTGTACAAGATCTGAGTTGTTTCAGTTGATAGTATTGTTGTGTTATTCATTGCCATAGAGAATCTCCAACTGCATAGGTAGCTGAACATTTTATTCTTCAAGCTCTTATCTCAGCCATGGTTGCTACCTCCACAGTTTTATTCCTTGTGAAAAGAAGCCTGTAGATTGCCACTTGAAGATTTGTTATGTACTATAACATACCAGAACAAATTTAGTACAAATTCAATAATATGAACTTGGGAGCAATAATATTCTACTTTCCGTATTGATTGTCCAATAAAAGCTTCTTAGGACATTTTAAGAACATGTTTTAAGAATAAAGAAAACAAATAGTTAATTTGCGTCTGTAATTTTAAGGAAACTTCTATGTGGTTATGGATTAGAAATGTAATCTC

Coding sequence (CDS)

ATGGCTGTTGCTTCGTTATGTCAATCCACTATGCAATCCAAGGTCAGTGGGTTTATCGGAGGTCTCACTTTTCAGAAACCACCTCTCTCTCAACCTTCATCTCTTACCTTTTCGAGGAGGAGGTTCAGAAATGTGGTGAAAGCTTCATCTCGGGTTGATAAATACTCAAAATCTGATATCATCGTCTCTCCCTCAATCCTCTCTGCTAACTTTGCCAAATTGGGAGAGCAGGTCAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGCCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCTGAGCAGCGTGTGCCAGACTTTATAAAGGCTGGTGCCGATATTGTCAGTGTTCATTGTGAGCAATCTTCCACAATCCATCTGCACCGCACCGTTAATCAAATAAAAAGTCTTGGAGCTAAAGCTGGAGTGGTTCTAAATCCTGCTACTTCACTCAGCACAATTGAATATGTCCTTGACGTTGTTGATTTGGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTAAAGAAAATCTCAGATTTAAGAAGATTATGTGCTGAAAAGGTTTACAAACCTATTGGCAATTCATTTGCTTTGTTGCAGGGAGTTAACCCATGGATCGAGGTGGACGGTGGAGTCGGTCCAGCCAATGCATACAAGGTAATTGAGGCTGGAGCCAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCTGAGGCCATAAAAGGAATCAAAACAAGCAAAAGGCCGGAGGCAGTTCCAGTATGA

Protein sequence

MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV

Homology

[Close]

BLAST of Clc04G12560 vs. NCBI nr
Match: XP_038895735.1 (ribulose-phosphate 3-epimerase, chloroplastic [Benincasa hispida])

HSP 1 Score: 535.0 bits (1377), Expect = 4.0e-148
Identity = 281/296 (94.93%), Postives = 282/296 (95.27%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQP SLTFSRRRFRNVVKAS+RVDKYSKSDI
Sbjct: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPPSLTFSRRRFRNVVKASARVDKYSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK             GV
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK-------------GV 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV
Sbjct: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 283

[Close]

BLAST of Clc04G12560 vs. NCBI nr
Match: XP_008444463.1 (PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Cucumis melo])

HSP 1 Score: 527.3 bits (1357), Expect = 8.4e-146
Identity = 276/296 (93.24%), Postives = 280/296 (94.59%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTMQS+VSGF+GG TFQKPP SQPSSLTFSRRRFRNVVKAS+RVD+YSKSDI
Sbjct: 1   MAVASLCQSTMQSQVSGFVGGRTFQKPPNSQPSSLTFSRRRFRNVVKASARVDRYSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK             G 
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK-------------GA 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV
Sbjct: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 283

[Close]

BLAST of Clc04G12560 vs. NCBI nr
Match: TYJ98906.1 (ribulose-phosphate 3-epimerase [Cucumis melo var. makuwa])

HSP 1 Score: 527.3 bits (1357), Expect = 8.4e-146
Identity = 276/295 (93.56%), Postives = 280/295 (94.92%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTMQS+VSGF+GG TFQKPP SQPSSLTFSRRRFRNVVKAS+RVD+YSKSDI
Sbjct: 1   MAVASLCQSTMQSQVSGFVGGRTFQKPPNSQPSSLTFSRRRFRNVVKASARVDRYSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK             GV
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK-------------GV 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVP 296
           NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVP
Sbjct: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVP 282

[Close]

BLAST of Clc04G12560 vs. NCBI nr
Match: XP_004137418.1 (ribulose-phosphate 3-epimerase, chloroplastic [Cucumis sativus] >KGN64018.1 hypothetical protein Csa_013085 [Cucumis sativus])

HSP 1 Score: 525.8 bits (1353), Expect = 2.4e-145
Identity = 276/296 (93.24%), Postives = 281/296 (94.93%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTM+S+VSGFIGGLTFQKPP SQPSSLT SRRRFRNVVKAS+RVDK+SKSDI
Sbjct: 1   MAVASLCQSTMKSQVSGFIGGLTFQKPPNSQPSSLTVSRRRFRNVVKASARVDKFSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANF+KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK             GV
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK-------------GV 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV
Sbjct: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 283

[Close]

BLAST of Clc04G12560 vs. NCBI nr
Match: XP_023001118.1 (ribulose-phosphate 3-epimerase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 518.8 bits (1335), Expect = 3.0e-143
Identity = 271/296 (91.55%), Postives = 278/296 (93.92%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTMQ +VSGFIGGLTFQKP LSQP+SL FSRRRFRNV KAS+RVDKYSKSDI
Sbjct: 1   MAVASLCQSTMQPQVSGFIGGLTFQKPALSQPTSLPFSRRRFRNVAKASARVDKYSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           +TIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS+LRRLCAEK             GV
Sbjct: 181 TTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEK-------------GV 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           NPWIEVDGGVGP NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP+AVPV
Sbjct: 241 NPWIEVDGGVGPGNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVPV 283

[Close]

BLAST of Clc04G12560 vs. ExPASy Swiss-Prot
Match: Q43157 (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPE PE=1 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 1.7e-133
Identity = 250/298 (83.89%), Postives = 266/298 (89.26%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQK--PPLSQPSSLTFSRRRFRNVVKASSRVDKYSKS 60
           M+ ASLCQST+QS+++GF GGL  +K  P  S P+SLTF+RR+ + +VKA+SRVDK+SKS
Sbjct: 1   MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKS 60

Query: 61  DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 120
           DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL
Sbjct: 61  DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 120

Query: 121 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPAT 180
           PLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRTVNQIKSLGAKAGVVLNP T
Sbjct: 121 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGT 180

Query: 181 SLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQ 240
            LSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR++C EK             
Sbjct: 181 PLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEK------------- 240

Query: 241 GVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           GVNPWIEVDGGV PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRPE V V
Sbjct: 241 GVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVAV 285

[Close]

BLAST of Clc04G12560 vs. ExPASy Swiss-Prot
Match: Q43843 (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.4e-127
Identity = 239/293 (81.57%), Postives = 257/293 (87.71%), Query Frame = 0


Query: 5   SLCQST-MQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDIIVS 64
           SL  ST +QS++SGF G    QK   S P+SLTF+RRR + VV ASSRVDK+SKSDIIVS
Sbjct: 1   SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVS 60

Query: 65  PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 124
           PSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVH
Sbjct: 61  PSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVH 120

Query: 125 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLSTI 184
           LMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIKSLGAKAGVVLNP T L+ I
Sbjct: 121 LMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAI 180

Query: 185 EYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGVNPW 244
           EYVLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++CAE+             G+NPW
Sbjct: 181 EYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAER-------------GLNPW 240

Query: 245 IEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           IEVDGGVGP NAYKVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRPEAV V
Sbjct: 241 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPEAVAV 280

[Close]

BLAST of Clc04G12560 vs. ExPASy Swiss-Prot
Match: Q9SAU2 (Ribulose-5-phosphate-3-epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPE PE=2 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 5.3e-127
Identity = 245/295 (83.05%), Postives = 258/295 (87.46%), Query Frame = 0


Query: 2   AVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDII 61
           + ASLC S+ Q  V+GF  GL  ++  L QP+S +FSRRR   +VKASSRVD++SKSDII
Sbjct: 4   SAASLCCSSTQ--VNGF--GLRPERSLLYQPTSFSFSRRRTHGIVKASSRVDRFSKSDII 63

Query: 62  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 121
           VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD
Sbjct: 64  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 123

Query: 122 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLS 181
           VHLMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRTVNQIKSLGAKAGVVLNP T LS
Sbjct: 124 VHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLS 183

Query: 182 TIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGVN 241
            IEYVLD+VDLVLIMSVNPGFGGQSFIESQVKKISDLR++CAEK             GVN
Sbjct: 184 AIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEK-------------GVN 243

Query: 242 PWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           PWIEVDGGV PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP AV V
Sbjct: 244 PWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPAAVAV 281

[Close]

BLAST of Clc04G12560 vs. ExPASy Swiss-Prot
Match: Q9ZTP5 (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPE PE=1 SV=2)

HSP 1 Score: 428.3 bits (1100), Expect = 6.9e-119
Identity = 229/292 (78.42%), Postives = 246/292 (84.25%), Query Frame = 0


Query: 4   ASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDIIVS 63
           +SLC +    + +     L F  P           R+ FR  V+ASSRVDK+SK+DIIVS
Sbjct: 8   SSLCSTFASPRAASLGRRLAFSSP-----------RKAFR--VRASSRVDKFSKNDIIVS 67

Query: 64  PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 123
           PSILSANF+KLGEQVKAVE+AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH
Sbjct: 68  PSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 127

Query: 124 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLSTI 183
           LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPAT L+ I
Sbjct: 128 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAI 187

Query: 184 EYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGVNPW 243
           +YVLDVVDLVLIMSVNPGFGGQSFIESQVKKI++LRRLCAEK             GVNPW
Sbjct: 188 DYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEK-------------GVNPW 247

Query: 244 IEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVP 296
           IEVDGGVGP NAYKVIEAGANA+VAGSAVFGA DYAEAIKGIKTS++P AVP
Sbjct: 248 IEVDGGVGPKNAYKVIEAGANAIVAGSAVFGAPDYAEAIKGIKTSQKPVAVP 273

[Close]

BLAST of Clc04G12560 vs. ExPASy Swiss-Prot
Match: P74061 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpe PE=1 SV=3)

HSP 1 Score: 300.8 bits (769), Expect = 1.7e-80
Identity = 151/234 (64.53%), Postives = 187/234 (79.91%), Query Frame = 0


Query: 59  DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 118
           +I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T  
Sbjct: 4   NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 63

Query: 119 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPAT 178
            LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRT+ QI+ LG KAG VLNP+T
Sbjct: 64  TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 123

Query: 179 SLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQ 238
            L  +EYVL V DL+LIMSVNPGFGGQSFI   + KI  LR++C E+             
Sbjct: 124 PLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDER------------- 183

Query: 239 GVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPE 293
           G++PWIEVDGG+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++ SKRPE
Sbjct: 184 GLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE 224

[Close]

BLAST of Clc04G12560 vs. ExPASy TrEMBL
Match: A0A5D3BIJ2 (Pentose-5-phosphate 3-epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001030 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 4.1e-146
Identity = 276/295 (93.56%), Postives = 280/295 (94.92%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTMQS+VSGF+GG TFQKPP SQPSSLTFSRRRFRNVVKAS+RVD+YSKSDI
Sbjct: 1   MAVASLCQSTMQSQVSGFVGGRTFQKPPNSQPSSLTFSRRRFRNVVKASARVDRYSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK             GV
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK-------------GV 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVP 296
           NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVP
Sbjct: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVP 282

[Close]

BLAST of Clc04G12560 vs. ExPASy TrEMBL
Match: A0A1S3BAG4 (Pentose-5-phosphate 3-epimerase OS=Cucumis melo OX=3656 GN=LOC103487698 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 4.1e-146
Identity = 276/296 (93.24%), Postives = 280/296 (94.59%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTMQS+VSGF+GG TFQKPP SQPSSLTFSRRRFRNVVKAS+RVD+YSKSDI
Sbjct: 1   MAVASLCQSTMQSQVSGFVGGRTFQKPPNSQPSSLTFSRRRFRNVVKASARVDRYSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK             G 
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK-------------GA 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV
Sbjct: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 283

[Close]

BLAST of Clc04G12560 vs. ExPASy TrEMBL
Match: A0A0A0LQJ1 (Pentose-5-phosphate 3-epimerase OS=Cucumis sativus OX=3659 GN=Csa_1G038360 PE=3 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.2e-145
Identity = 276/296 (93.24%), Postives = 281/296 (94.93%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTM+S+VSGFIGGLTFQKPP SQPSSLT SRRRFRNVVKAS+RVDK+SKSDI
Sbjct: 1   MAVASLCQSTMKSQVSGFIGGLTFQKPPNSQPSSLTVSRRRFRNVVKASARVDKFSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANF+KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK             GV
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEK-------------GV 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV
Sbjct: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 283

[Close]

BLAST of Clc04G12560 vs. ExPASy TrEMBL
Match: A0A6J1KPK9 (Pentose-5-phosphate 3-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111495357 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.4e-143
Identity = 271/296 (91.55%), Postives = 278/296 (93.92%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTMQ +VSGFIGGLTFQKP LSQP+SL FSRRRFRNV KAS+RVDKYSKSDI
Sbjct: 1   MAVASLCQSTMQPQVSGFIGGLTFQKPALSQPTSLPFSRRRFRNVAKASARVDKYSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           +TIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS+LRRLCAEK             GV
Sbjct: 181 TTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEK-------------GV 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           NPWIEVDGGVGP NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP+AVPV
Sbjct: 241 NPWIEVDGGVGPGNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVPV 283

[Close]

BLAST of Clc04G12560 vs. ExPASy TrEMBL
Match: A0A6J1KAF8 (Pentose-5-phosphate 3-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111493142 PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.2e-142
Identity = 271/296 (91.55%), Postives = 278/296 (93.92%), Query Frame = 0


Query: 1   MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDI 60
           MAVASLCQSTM S+VSG IGGLTFQK  LSQP+SLTFSRR ++NVVKAS+RVDKYSKSDI
Sbjct: 1   MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSDI 60

Query: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIKSLGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATSL 180

Query: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGV 240
           STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS+LRRLCAEK             GV
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEK-------------GV 240

Query: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV
Sbjct: 241 NPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 283

[Close]

BLAST of Clc04G12560 vs. TAIR 10
Match: AT5G61410.1 (D-ribulose-5-phosphate-3-epimerase )

HSP 1 Score: 455.3 bits (1170), Expect = 3.8e-128
Identity = 245/295 (83.05%), Postives = 258/295 (87.46%), Query Frame = 0


Query: 2   AVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDII 61
           + ASLC S+ Q  V+GF  GL  ++  L QP+S +FSRRR   +VKASSRVD++SKSDII
Sbjct: 4   SAASLCCSSTQ--VNGF--GLRPERSLLYQPTSFSFSRRRTHGIVKASSRVDRFSKSDII 63

Query: 62  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 121
           VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD
Sbjct: 64  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 123

Query: 122 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLS 181
           VHLMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRTVNQIKSLGAKAGVVLNP T LS
Sbjct: 124 VHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLS 183

Query: 182 TIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGVN 241
            IEYVLD+VDLVLIMSVNPGFGGQSFIESQVKKISDLR++CAEK             GVN
Sbjct: 184 AIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEK-------------GVN 243

Query: 242 PWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           PWIEVDGGV PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP AV V
Sbjct: 244 PWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPAAVAV 281

[Close]

BLAST of Clc04G12560 vs. TAIR 10
Match: AT5G61410.2 (D-ribulose-5-phosphate-3-epimerase )

HSP 1 Score: 455.3 bits (1170), Expect = 3.8e-128
Identity = 245/295 (83.05%), Postives = 258/295 (87.46%), Query Frame = 0


Query: 2   AVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDII 61
           + ASLC S+ Q  V+GF  GL  ++  L QP+S +FSRRR   +VKASSRVD++SKSDII
Sbjct: 4   SAASLCCSSTQ--VNGF--GLRPERSLLYQPTSFSFSRRRTHGIVKASSRVDRFSKSDII 63

Query: 62  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 121
           VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD
Sbjct: 64  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 123

Query: 122 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLS 181
           VHLMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRTVNQIKSLGAKAGVVLNP T LS
Sbjct: 124 VHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLS 183

Query: 182 TIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGVN 241
            IEYVLD+VDLVLIMSVNPGFGGQSFIESQVKKISDLR++CAEK             GVN
Sbjct: 184 AIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEK-------------GVN 243

Query: 242 PWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 297
           PWIEVDGGV PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP AV V
Sbjct: 244 PWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPAAVAV 281

[Close]

BLAST of Clc04G12560 vs. TAIR 10
Match: AT3G01850.1 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-36
Identity = 86/230 (37.39%), Postives = 132/230 (57.39%), Query Frame = 0


Query: 62  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 121
           ++PS+LS++FA L  +   +   G +W+H+D+MDG FVPN+TIG  V+++LR  T+  LD
Sbjct: 6   IAPSMLSSDFANLAAEANRMIDLGANWLHMDIMDGHFVPNLTIGAPVIESLRKHTNAYLD 65

Query: 122 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLS 181
            HLM+  P   V    KAGA   + H E +   +  + V +IKS G + GV L P T + 
Sbjct: 66  CHLMVTNPMDYVAQMAKAGASGFTFHVEVAQD-NWQQLVEKIKSTGMRPGVALKPGTPVE 125

Query: 182 TIEYVLD---VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQ 241
            +  +++    V++VL+M+V PGFGGQ F+   + K+  LR+             +  L 
Sbjct: 126 QVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALRQ------------KYPTLD 185

Query: 242 GVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 289
                I+VDGG+GP+       AGAN +VAGS+VFGA +  + I  ++TS
Sbjct: 186 -----IQVDGGLGPSTIDTAAAAGANCIVAGSSVFGAPEPGDVISLLRTS 217

[Close]

BLAST of Clc04G12560 vs. TAIR 10
Match: AT3G01850.2 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-36
Identity = 86/230 (37.39%), Postives = 132/230 (57.39%), Query Frame = 0


Query: 62  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 121
           ++PS+LS++FA L  +   +   G +W+H+D+MDG FVPN+TIG  V+++LR  T+  LD
Sbjct: 6   IAPSMLSSDFANLAAEANRMIDLGANWLHMDIMDGHFVPNLTIGAPVIESLRKHTNAYLD 65

Query: 122 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLS 181
            HLM+  P   V    KAGA   + H E +   +  + V +IKS G + GV L P T + 
Sbjct: 66  CHLMVTNPMDYVAQMAKAGASGFTFHVEVAQD-NWQQLVEKIKSTGMRPGVALKPGTPVE 125

Query: 182 TIEYVLD---VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQ 241
            +  +++    V++VL+M+V PGFGGQ F+   + K+  LR+             +  L 
Sbjct: 126 QVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALRQ------------KYPTLD 185

Query: 242 GVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 289
                I+VDGG+GP+       AGAN +VAGS+VFGA +  + I  ++TS
Sbjct: 186 -----IQVDGGLGPSTIDTAAAAGANCIVAGSSVFGAPEPGDVISLLRTS 217

[Close]

BLAST of Clc04G12560 vs. TAIR 10
Match: AT1G63290.1 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 148.3 bits (373), Expect = 9.8e-36
Identity = 87/230 (37.83%), Postives = 130/230 (56.52%), Query Frame = 0


Query: 62  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 121
           ++PS+LS++FA L  + K +   G +W+H+D+MDG FV N+TIG  V+++LR  T+  LD
Sbjct: 8   IAPSMLSSDFANLAAEAKRMIDLGANWLHMDIMDGHFVSNLTIGAPVIESLRKHTNAYLD 67

Query: 122 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLS 181
            HLM+  P   V    KAGA   + H E +   +    V +IK+ G + GV L P T + 
Sbjct: 68  CHLMVTNPMDYVDQMAKAGASGFTFHVEVAQE-NWQELVKKIKAAGMRPGVALKPGTPVE 127

Query: 182 TIEYVLD---VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQ 241
            +  +++    V++VL+M+V PGFGGQ F+ S + K+  LR            N +  L 
Sbjct: 128 QVYPLVEGTNPVEMVLVMTVEPGFGGQKFMPSMMDKVRALR------------NKYPTLD 187

Query: 242 GVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 289
                IEVDGG+GP+       AGAN +VAGS+VFGA    + I  ++ S
Sbjct: 188 -----IEVDGGLGPSTIDAAAAAGANCIVAGSSVFGAPKPGDVISLLRAS 219

The following BLAST results are available for this feature:

BLAST of Clc04G12560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895735.1	4.0e-148	94.93	ribulose-phosphate 3-epimerase, chloroplastic [Benincasa hispida]	[more]
XP_008444463.1	8.4e-146	93.24	PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Cucumis melo]	[more]
TYJ98906.1	8.4e-146	93.56	ribulose-phosphate 3-epimerase [Cucumis melo var. makuwa]	[more]
XP_004137418.1	2.4e-145	93.24	ribulose-phosphate 3-epimerase, chloroplastic [Cucumis sativus] >KGN64018.1 hypo...	[more]
XP_023001118.1	3.0e-143	91.55	ribulose-phosphate 3-epimerase, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Clc04G12560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43157	1.7e-133	83.89	Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea OX=3562 GN=RP...	[more]
Q43843	2.4e-127	81.57	Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum OX...	[more]
Q9SAU2	5.3e-127	83.05	Ribulose-5-phosphate-3-epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZTP5	6.9e-119	78.42	Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX...	[more]
P74061	1.7e-80	64.53	Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) O...	[more]

BLAST of Clc04G12560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIJ2	4.1e-146	93.56	Pentose-5-phosphate 3-epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BAG4	4.1e-146	93.24	Pentose-5-phosphate 3-epimerase OS=Cucumis melo OX=3656 GN=LOC103487698 PE=3 SV=...	[more]
A0A0A0LQJ1	1.2e-145	93.24	Pentose-5-phosphate 3-epimerase OS=Cucumis sativus OX=3659 GN=Csa_1G038360 PE=3 ...	[more]
A0A6J1KPK9	1.4e-143	91.55	Pentose-5-phosphate 3-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111495357 PE=3...	[more]
A0A6J1KAF8	1.2e-142	91.55	Pentose-5-phosphate 3-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111493142 PE=3...	[more]

BLAST of Clc04G12560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61410.1	3.8e-128	83.05	D-ribulose-5-phosphate-3-epimerase	[more]
AT5G61410.2	3.8e-128	83.05	D-ribulose-5-phosphate-3-epimerase	[more]
AT3G01850.1	5.8e-36	37.39	Aldolase-type TIM barrel family protein	[more]
AT3G01850.2	5.8e-36	37.39	Aldolase-type TIM barrel family protein	[more]
AT1G63290.1	9.8e-36	37.83	Aldolase-type TIM barrel family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000056	Ribulose-phosphate 3-epimerase-like	PFAM	PF00834	Ribul_P_3_epim	coord: 62..273 e-value: 3.9E-83 score: 277.7
IPR000056	Ribulose-phosphate 3-epimerase-like	PANTHER	PTHR11749	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	coord: 16..286
IPR000056	Ribulose-phosphate 3-epimerase-like	PROSITE	PS01085	RIBUL_P_3_EPIMER_1	coord: 89..103
IPR000056	Ribulose-phosphate 3-epimerase-like	PROSITE	PS01086	RIBUL_P_3_EPIMER_2	coord: 193..215
IPR000056	Ribulose-phosphate 3-epimerase-like	CDD	cd00429	RPE	coord: 61..286 e-value: 8.20921E-126 score: 355.634
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 50..292 e-value: 1.4E-93 score: 314.0
IPR026019	Ribulose-phosphate 3-epimerase	TIGRFAM	TIGR01163	TIGR01163	coord: 62..286 e-value: 2.6E-84 score: 279.8
IPR026019	Ribulose-phosphate 3-epimerase	HAMAP	MF_02227	RPE	coord: 59..288 score: 56.575195
None	No IPR available	PIRSR	PIRSR001461-3	PIRSR001461-3	coord: 61..223 e-value: 4.6E-68 score: 226.4
None	No IPR available	PIRSR	PIRSR001461-2	PIRSR001461-2	coord: 61..223 e-value: 1.6E-68 score: 227.9
None	No IPR available	PANTHER	PTHR11749:SF13	SUBFAMILY NOT NAMED	coord: 16..286
IPR011060	Ribulose-phosphate binding barrel	SUPERFAMILY	51366	Ribulose-phoshate binding barrel	coord: 55..289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G12560.2	Clc04G12560.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0019323	pentose catabolic process
biological_process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0005829	cytosol
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004750	ribulose-phosphate 3-epimerase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives