Clc04G10680 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G10680
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionBric-a-brac protein
LocationClcChr04: 24216899 .. 24219336 (-)
RNA-Seq ExpressionClc04G10680
SyntenyClc04G10680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTGTGGCTGAACCCTCTCCCTCGCGGCCAGCTAGCAACTAGCGCCTGCTTCTTCGTCGTCGGAGTCTCCTTCTTCGCCGCCGGAGCTTACCTCTCTTTCCTCAACATCGCCCCTCAGCAAGCTCGAACCAAAGCTCGTGATGATTTTGTCAAGGAGCGTTTGAGGAAGCGTCACCACGACTAACGTCCATCGGCTTCTTCCAGTGAGCATCCAATCTCACCTCATCTTATTGTTTTCAATTTTTCTCTCAGGACTCTATGATTATAGAAATTAACTTAGGCCAGCATTCATGTTAGGTCGTTTCTGATTCTTTGGCAATTTGACTAATTTGTAAAAGGATTGGAAATTCTTAATCTTGATTTGTTTCCTTCTTCTCTACGAATCGGACGGGTTTTCGAATCCGTCTTACCGTGCCATTTATTTAACTCCTCGTTGTGGAACACAGCAAATTCAATCACTTTCTTTATCCGTGTAGTTCATCTCTTTTCGCTGTTGCTCGACTTGGTCTTTGGGTTTAATCGTTTAAGAACGCCATCTCAGTTCTTGAAAGCCAATTACCGTATATGATCGACGATCGGTTTGAAAGACCTCACTTCCGTAGGAATCCAATTTTGTACACCTAAGATCCTCGGATTCCCCCTCTTCAATCCCCTGGGTCTCAATTTCTATCACCCTGGAAGTGCTCCTTTGGTATTATTGAGGTGGTAAAATTTTCCTTTCTTCCCTTTCACTATATATCCTTGTGGTAGTTCCACATACATTTCTTCCACTTCGCCGTTCAAGGATGCAAGCCTGACCATCAAGTTAAAATACATTTTGTCCTAACTAAACTACTAAGACAAGAACAGTTCTTATATGAGTCTCATGGTCTGCGTTCCTGTTTGTTTGTTAGAAATCGAGCTTTCATTGAAGAAAATGAAGGAATTGCGAGGGCATACAAAAAACAATCACAGCAAAAAAAAGAGCCTAAGAACTAATCACATAAACGAACTCCAAAATCATACCAAGATCATAGTGACAAAAAGGCCTAGTAATCAAGCTACACTCAACCCTTCCCAATGGTGCATCTAATAAACAAAAGAACAGGAAGGAAGCCAGAGGCGAAAACCTTCAAGTGGTTTTTATCAGGCCATTTTGTATGACCTTGAGTAACGCATTCAAAAGCGGTGTGAACCATACCTACTCATAATAACTTGGTGCTAGGAAGCATCGGATTCCATGAAAAACCACAACCACCTAGCCAGAGGCTGTTTTTGATTCTTTGAAGCTCCCATGTTTTATTTCTTTCTGTGTGGCAATTTCTTCCTCTATAGCTCTAAGGCTAAATTTGACAAATTCAAAATTCTTTGAATTGTAAGGGAATTGAGATACCTAGGCAATGTTTCAGTAATCTTTCATTGCATTATTTTGAAATACAGAATTATGCGAATAAAGGGAGGTTCAGAGGAGTATGAAAAAGAAATTTTGAACAAAGTCAAAGGTAGAAAGAGCTACAGTCATTTGATTAATTAAAGCAATCATTAGCAGTTTAGATACTACAAATAAGTAAACTAGTCGATGATGGACTATCAAGAGCATGGGCTTTTTCCATGGATTCCAGAAGTCATTGTCTTAAAAGAAAGAATTTGTTAGGGATAATTGTTTTGCTAAACTGTTATTTGACCTAGTAGAGAACAACTTGATAGAAAGGTAGGTAGTGTTCATTAGTGATGAAGTGATTCTTCTGTTTGTATAGATTAAATTGAATATAAGTAGATTTATGAAGTAGTTTGTAAGACTAAACACTCACTTGAAACTTCAAATAGGATAAACTATGCTTCTAATTAAGATTTTAAGTACATTTTTCTTTGATTTTGATATTATAGTCTTCAAGCCTTATTTGTCAGTGAGTTTTTTGTTTCCTTTGCTTAATGAGTAATCACTAGCAAAATATTTAGTTTGAGAAGATTATTTGACAGTCGAATTTATACTTTGTATATTAAATTTGTTTTGCTTAAGTTTATTGAAAGTTTTATGGTAGGTATTTATGGTTTTTCTTTATTGTAGGTTAACAAAGAATTCCCCAAATTTGAAGAACAGAAGTATGAACTTTAAAGACGTAATGAATGGGACAAAAATAGAGGTTGGCACTGAGGTTTCAGAGCGCCGCGACGCCAATTAAGTCATTTTGTAGACACTATGAACTTTATACATGCGCCTAGGCGCCAGAACATAGCTTTAGATGTGATCTTGGATGTATTTAGTTGATTCTGAGGCATCTTGAAAAGAGGAGATTCGAAGCAACCGTTGGAGACATCTTGGAATGAATCATATGCTTCAATTTTGCCTTCATTTCTTTTAATTATTAGTTTCATTACGTGGTAGGATTTTCTTTTCGTACTATGGTGTATAGTTTTTCTATGAACTCTTTTGTATTATTTAATTTTAATTAA

mRNA sequence

ATGGGACTGTGGCTGAACCCTCTCCCTCGCGGCCAGCTAGCAACTAGCGCCTGCTTCTTCGTCGTCGGAGTCTCCTTCTTCGCCGCCGGAGCTTACCTCTCTTTCCTCAACATCGCCCCTCAGCAAGCTCGAACCAAAGCTCGTGATGATTTTGTCAAGGAGCAGGCGAAAACCTTCAAGTGGTTTTTATCAGGCCATTTTTCTTCAAGCCTTATTTGTCAGTTAACAAAGAATTCCCCAAATTTGAAGAACAGAAGTATGAACTTTAAAGACGTAATGAATGGGACAAAAATAGAGGTTGGCACTGAGGTTTCAGAGCGCCGCGACGCCAATTAAGTCATTTTGTAGACACTATGAACTTTATACATGCGCCTAGGCGCCAGAACATAGCTTTAGATGTGATCTTGGATGTATTTAGTTGATTCTGAGGCATCTTGAAAAGAGGAGATTCGAAGCAACCGTTGGAGACATCTTGGAATGAATCATATGCTTCAATTTTGCCTTCATTTCTTTTAATTATTAGTTTCATTACGTGGTAGGATTTTCTTTTCGTACTATGGTGTATAGTTTTTCTATGAACTCTTTTGTATTATTTAATTTTAATTAA

Coding sequence (CDS)

ATGGGACTGTGGCTGAACCCTCTCCCTCGCGGCCAGCTAGCAACTAGCGCCTGCTTCTTCGTCGTCGGAGTCTCCTTCTTCGCCGCCGGAGCTTACCTCTCTTTCCTCAACATCGCCCCTCAGCAAGCTCGAACCAAAGCTCGTGATGATTTTGTCAAGGAGCAGGCGAAAACCTTCAAGTGGTTTTTATCAGGCCATTTTTCTTCAAGCCTTATTTGTCAGTTAACAAAGAATTCCCCAAATTTGAAGAACAGAAGTATGAACTTTAAAGACGTAATGAATGGGACAAAAATAGAGGTTGGCACTGAGGTTTCAGAGCGCCGCGACGCCAATTAA

Protein sequence

MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAKTFKWFLSGHFSSSLICQLTKNSPNLKNRSMNFKDVMNGTKIEVGTEVSERRDAN
Homology
[Close]
BLAST of Clc04G10680 vs. NCBI nr
Match: XP_038880929.1 (uncharacterized protein LOC120072605 [Benincasa hispida] >XP_038880930.1 uncharacterized protein LOC120072605 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-21
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MGLWLNPLPRGQLATSACFFV GVSFFAAGAYLSFLNIAPQQARTKARDDFVKE+ +
Sbjct: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLR 57

[Close]
BLAST of Clc04G10680 vs. NCBI nr
Match: XP_022132375.1 (uncharacterized protein LOC111005249 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MGLWL+PLPRGQLATSACFFV GVSFFA GAY S+LNIAPQQARTKARDDFVKE+ +
Sbjct: 1  MGLWLDPLPRGQLATSACFFVAGVSFFAVGAYFSYLNIAPQQARTKARDDFVKERLR 57

[Close]
BLAST of Clc04G10680 vs. NCBI nr
Match: XP_016902886.1 (PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo] >KAA0025233.1 hypothetical protein E6C27_scaffold541G00820 [Cucumis melo var. makuwa] >TYK07433.1 hypothetical protein E5676_scaffold202G001620 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MGLWLNPLPRGQL TSACFF+VGVS FAAGA+LS+LNI PQQARTKARDDFV+E+ +
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLR 57

[Close]
BLAST of Clc04G10680 vs. NCBI nr
Match: XP_023517718.1 (uncharacterized protein LOC111781390 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MGLWLNPLPRGQL TSAC+FV G SFF  GAYLS++N+ PQQARTKAR DFV+E+ +
Sbjct: 1  MGLWLNPLPRGQLGTSACYFVAGFSFFVVGAYLSYVNVGPQQARTKARSDFVRERLR 57

[Close]
BLAST of Clc04G10680 vs. NCBI nr
Match: XP_022962859.1 (uncharacterized protein LOC111463226 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-15
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MG WLNPLPRGQL TSAC+FV G S FA GAYLS++NI PQQARTKAR DFV+E+ +
Sbjct: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLR 57

[Close]
BLAST of Clc04G10680 vs. ExPASy TrEMBL
Match: A0A6J1BSA7 (uncharacterized protein LOC111005249 OS=Momordica charantia OX=3673 GN=LOC111005249 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MGLWL+PLPRGQLATSACFFV GVSFFA GAY S+LNIAPQQARTKARDDFVKE+ +
Sbjct: 1  MGLWLDPLPRGQLATSACFFVAGVSFFAVGAYFSYLNIAPQQARTKARDDFVKERLR 57

[Close]
BLAST of Clc04G10680 vs. ExPASy TrEMBL
Match: A0A5D3C6A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001620 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.2e-19
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MGLWLNPLPRGQL TSACFF+VGVS FAAGA+LS+LNI PQQARTKARDDFV+E+ +
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLR 57

[Close]
BLAST of Clc04G10680 vs. ExPASy TrEMBL
Match: A0A1S4E3S6 (uncharacterized protein LOC103500918 OS=Cucumis melo OX=3656 GN=LOC103500918 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.2e-19
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MGLWLNPLPRGQL TSACFF+VGVS FAAGA+LS+LNI PQQARTKARDDFV+E+ +
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLR 57

[Close]
BLAST of Clc04G10680 vs. ExPASy TrEMBL
Match: A0A6J1HI96 (uncharacterized protein LOC111463226 OS=Cucurbita moschata OX=3662 GN=LOC111463226 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.6e-16
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MG WLNPLPRGQL TSAC+FV G S FA GAYLS++NI PQQARTKAR DFV+E+ +
Sbjct: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLR 57

[Close]
BLAST of Clc04G10680 vs. ExPASy TrEMBL
Match: A0A0A0KEZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454330 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MGLWLNPLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAK 58
          MGLWLNPLP GQL  SAC F+VG+S FAAGA+LS+LNI PQQARTKAR DFVKE+ +
Sbjct: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLR 57

[Close]
BLAST of Clc04G10680 vs. TAIR 10
Match: AT3G11591.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-11
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 7  PLPRGQLATSACFFVVGVSFFAAGAYLSFLNIAPQQARTKARDDFVKEQAKTFKW 62
          P  R QL  S  FF  GVS F AGAYLS  NI+PQQAR KAR+DFVK++ +  KW
Sbjct: 8  PPTRRQLVVSVGFFAAGVSLFVAGAYLSLANISPQQARVKARNDFVKDRIR--KW 60

The following BLAST results are available for this feature:
BLAST of Clc04G10680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880929.14.1e-2192.98uncharacterized protein LOC120072605 [Benincasa hispida] >XP_038880930.1 unchara... [more]
XP_022132375.12.9e-1985.96uncharacterized protein LOC111005249 [Momordica charantia][more]
XP_016902886.11.9e-1882.46PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo] >KAA0025233.1 hyp... [more]
XP_023517718.11.8e-1673.68uncharacterized protein LOC111781390 [Cucurbita pepo subsp. pepo][more]
XP_022962859.11.2e-1573.68uncharacterized protein LOC111463226 [Cucurbita moschata][more]
BLAST of Clc04G10680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc04G10680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BSA71.4e-1985.96uncharacterized protein LOC111005249 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A5D3C6A09.2e-1982.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4E3S69.2e-1982.46uncharacterized protein LOC103500918 OS=Cucumis melo OX=3656 GN=LOC103500918 PE=... [more]
A0A6J1HI965.6e-1673.68uncharacterized protein LOC111463226 OS=Cucurbita moschata OX=3662 GN=LOC1114632... [more]
A0A0A0KEZ91.2e-1575.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454330 PE=4 SV=1[more]
BLAST of Clc04G10680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G11591.17.0e-1160.00unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G10680.2Clc04G10680.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane