Clc04G08720 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G08720
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Histone H2A
Location	ClcChr04: 22420445 .. 22423233 (+)
RNA-Seq Expression	Clc04G08720
Synteny	Clc04G08720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGTTGTATTTGTTATATAGTTTAGCCATCGTATAATTAAAATGAACAAAAAAACACAACGACGTGTCCATGTCATCACGAATACGGCGTGTGTAATTCACTTTCCATTTTATTTCTCATTTCATAAAAATGTAATCTCCGTTGAAAACCGGTCGTTAACATCCCTCACATTTTCCCGAGAAAATTTTCTCTTGCAATGGACTCTGGCGTCAAGGCGAAGAAAGGCGTCGCCGGCAGAAGGGGCGGCGATCCTAAGAAGAAGCCTGTCTCTCGCTCCGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGCTACTCACGACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTTCTTGAGTACCTCGCTGCAGAGGTGAATATATACTACTTCGTTCTTCTCAGTTTTTCACTTTCGATTTACTTGATTTAGGGTTTCTTTTTTCAGCTTATTACATGTTTTGAATGCGCGTGCGAAATCAGAACTTTTATTCGATGGATTCGATGCTTGGATTGAAGTGCATTTTCTTTATTTCATGTCAATGACTTGGAATTTTATTATTCTCTTAGCTCTTTCTTTTCGGAGATAAAATCCTCAATTTGATGGAATTAGGTCTTTCTTTTCATTCTCTCTAATCTATTCTCTGATTTAGATCTCTATGTGGTTTTGTTTATATAGACAAGTCCATTCTAAGTTTTCAGACAATCTAGAAAGAAAGAAAAAAATCACCTAAAGTTTTTGTTTTTTTTAAGAAAAAAAAATTTAAGGTTTGTTTGATATCAGTTTTAATTTTAATTTTATGTTTTTAAAATTGTTTCCTCATTTTTATTTTTGTTTTCACATTTAATAAAGGAAGCCTTGAATATGCTGATCAAATTCTCAAAACAAATATAAGTTTTGGCTTGATTTTTTTTTTTTTTAAATATAGAGAATACAACGAGTGAACGTGGAAATAGTATTTTTAAACTTAATTTTTTAAAAAATGAAAATTGAAATAGTTATTAAATGAGATCTGAATTATTTTCTCATGTTTACAATTTGAAAAATGATTTTGAATGAAAGTATTTTATGCAAGGAGAAAATTAAAAATAAAAACTTCATCAAAAGCTAGTGATAAAAAAATAAAAAAACAGAAATTTGTAAACAAATAATTTGATGAAATAGAATTTATTTCAGGTGTTCGTTGTCTTTTTGAAGATCTTTGTTTGGTAGAGATTTAATTTGAAAAAGCGTACAAATGTTGTTTACAATCCATATATAATTCAAAAAACCGTTTTAAAAAATTAATTCATTCAAATATTTAATTTGAAAAATTAGAAATTCAATCTGAATAGATTCCCAACTGCCCTCGGTATCCGATTTGCTTGCTTTTACAACTCTTTTCCGCTGTCCTTTTATGTCCTGATTCCAATGCTTTATCCAAACTTGACTTTTGAAAGCTCAAAGCAGAGGGCCAAATATAGGATTTATTTATCAATGGTTTAATTTTGGCTTCATAGAAATGGCTGCCTTTTTTACTCACTTTTAGTTCAACAAATGCTAGGTCAGATATCAAGCCATCGAACTTTGTCATGGTAATTGATGTATTTGTCTATTGAACTATGTTCGGTTTGACACCTAAATTGAAATTGAAATAGAACTTTGAATTTCTATGTCTTTTATCAAGAGAAACTTTGATCATCCAACGAAGTTTAGTAGAATTCTTTTAATTTATTCACTAATGGAATCTTACACATAGGAGTTTGATGATAATACAAGAAGTGATATTGCATACTGAGCAATTGGGTTATTTTGTTAAGGATATCTATAAAAGATGACATATATGCATAACTAACTTGTAAACTTAAAATGTTTTAATGAGTTCACGGGTTCGATTGATAGTGGCCACCTACCTAAGATTTAATATCTTACTAGTTTTCTTAACACCCAAATGTTGTAGGGTCAAGTGGATTGTTTTGTGAGATTAGTTGAGATAAGCGTAAGCTGGCCCAGACACTCATTGATATAAATATAAAAGAAAAAGTATTTGAGTTCGAGAATTTAAGTTCAAATACTTATTATAATTAATATCAATAATTACTTGTTGAGTTTTTGTACGAATTTTCAAGCAAGGAAGTATTAAGAACACCTATGGAAGATTAAGCATTCTATATCCTATCAGTTTAAGACCAAATTATGCTTTAGGTTTTGGAACTCGCTGGGAATGCGGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTCCTTTTGGCTGTGAGAAACGACGAGGAACTTGGGAAGCTTCTTGCCGGGGTGACGATCGCTCATGGTGGGGTGCTTCCAAACATCAACCCAGTCCTTCTTCCAAAGAAATCCGAGAGGGCGGCAGCGGCATCCAAGGAGCCCAAGTCTCCCTCCAAGGGCACCAAGTCCCCAAAGAAGGCCTAGCTTAGCTTCTCATATGCCCTCACCTACTTAATTCTGTATTTAGATTTGGAGTTATCTTCATGTTTAGGACCACTTTTATCTGTTTGTGCTTTTATATTGTAGGACCTTCCTTTGTGTTCTCACAACTCAGTTGAAATGATGTAAAATTTAATCTCTATGAATCTTTGTACCTTCTCTACCAATGGGTTAATGTATGTAGGAGGCTTAATGTATGGATTGAATGATTGGACCATCGGATGGATAAAATTAGACCACCACGTTATGTGATTTGCTCTTGAATATTTTCAGATGCCTCATGGTTTGAAGATAATTAGAACTAAAA

mRNA sequence

CAAAAGTTGTATTTGTTATATAGTTTAGCCATCGTATAATTAAAATGAACAAAAAAACACAACGACGTGTCCATGTCATCACGAATACGGCGTGTGTAATTCACTTTCCATTTTATTTCTCATTTCATAAAAATGTAATCTCCGTTGAAAACCGGTCGTTAACATCCCTCACATTTTCCCGAGAAAATTTTCTCTTGCAATGGACTCTGGCGTCAAGGCGAAGAAAGGCGTCGCCGGCAGAAGGGGCGGCGATCCTAAGAAGAAGCCTGTCTCTCGCTCCGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGCTACTCACGACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTTCTTGAGTACCTCGCTGCAGAGGTTTTGGAACTCGCTGGGAATGCGGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTCCTTTTGGCTGTGAGAAACGACGAGGAACTTGGGAAGCTTCTTGCCGGGGTGACGATCGCTCATGGTGGGGTGCTTCCAAACATCAACCCAGTCCTTCTTCCAAAGAAATCCGAGAGGGCGGCAGCGGCATCCAAGGAGCCCAAGTCTCCCTCCAAGGGCACCAAGTCCCCAAAGAAGGCCTAGCTTAGCTTCTCATATGCCCTCACCTACTTAATTCTGTATTTAGATTTGGAGTTATCTTCATGTTTAGGACCACTTTTATCTGTTTGTGCTTTTATATTGTAGGACCTTCCTTTGTGTTCTCACAACTCAGTTGAAATGATGTAAAATTTAATCTCTATGAATCTTTGTACCTTCTCTACCAATGGGTTAATGTATGTAGGAGGCTTAATGTATGGATTGAATGATTGGACCATCGGATGGATAAAATTAGACCACCACGTTATGTGATTTGCTCTTGAATATTTTCAGATGCCTCATGGTTTGAAGATAATTAGAACTAAAA

Coding sequence (CDS)

ATGGACTCTGGCGTCAAGGCGAAGAAAGGCGTCGCCGGCAGAAGGGGCGGCGATCCTAAGAAGAAGCCTGTCTCTCGCTCCGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGCTACTCACGACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTTCTTGAGTACCTCGCTGCAGAGGTTTTGGAACTCGCTGGGAATGCGGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTCCTTTTGGCTGTGAGAAACGACGAGGAACTTGGGAAGCTTCTTGCCGGGGTGACGATCGCTCATGGTGGGGTGCTTCCAAACATCAACCCAGTCCTTCTTCCAAAGAAATCCGAGAGGGCGGCAGCGGCATCCAAGGAGCCCAAGTCTCCCTCCAAGGGCACCAAGTCCCCAAAGAAGGCCTAG

Protein sequence

MDSGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAAASKEPKSPSKGTKSPKKA

Homology

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BLAST of Clc04G08720 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 146/152 (96.05%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MDSG KAKKG AGRRGG PKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVYL
Sbjct: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSER AAA KEPKSPSKGTKSPKKA
Sbjct: 121 NPVLLPKKSER-AAAGKEPKSPSKGTKSPKKA 151

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BLAST of Clc04G08720 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 7.2e-69
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGG-DPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRRGG  PKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERA  A+KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

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BLAST of Clc04G08720 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 147/153 (96.08%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGG-DPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRRGG D KKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERAAAA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAA-KEPKSPSKGTKSPKKA 152

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BLAST of Clc04G08720 vs. NCBI nr
Match: XP_038994985.1 (histone H2A-like [Hibiscus syriacus] >KAE8733755.1 Histone H2A [Hibiscus syriacus])

HSP 1 Score: 261.9 bits (668), Expect = 3.4e-66
Identity = 139/152 (91.45%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD G K KKG  GR+GG PKKKPVSRSVKAGLQFPVGRIGRYLK GRYS+RVGTGAPVYL
Sbjct: 1   MDGGAKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSE+  AASKEPKSPSK TKSPKKA
Sbjct: 121 NPVLLPKKSEK--AASKEPKSPSKATKSPKKA 150

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BLAST of Clc04G08720 vs. NCBI nr
Match: XP_039043508.1 (histone H2A [Hibiscus syriacus] >KAE8664998.1 Histone H2A [Hibiscus syriacus])

HSP 1 Score: 261.2 bits (666), Expect = 5.7e-66
Identity = 138/152 (90.79%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD+G K KKG  GR+GG PKKKPVSRSVKAGLQFPVGRIGRYLK GRYS+RVGTGAPVYL
Sbjct: 1   MDTGAKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRH+LLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSE+  AASKEPKSPSK TKSPKKA
Sbjct: 121 NPVLLPKKSEK--AASKEPKSPSKSTKSPKKA 150

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BLAST of Clc04G08720 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.9e-67
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG K KKG AGRR GG PKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           INP+LLPKKSE+AA+ +K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of Clc04G08720 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.2e-67
Identity = 134/153 (87.58%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD+G K KKG   R+GG PKKKPVSRSVKAGLQFPVGRIGR+LK GRY++RVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSER-AAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKK+E+ AAAA+KEPKSP+K TKSPKKA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

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BLAST of Clc04G08720 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.5e-64
Identity = 128/153 (83.66%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD+  K KKG  GR+GG P+KK V+RS++AGLQFPVGRIGRYLK GRY++RVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAASKEPKSPS-KGTKSPKKA 153
           NPVLLPKK+ER+   SKEPKSP  K  KSPKKA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

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BLAST of Clc04G08720 vs. ExPASy Swiss-Prot
Match: A2WQG7 (Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.2e-62
Identity = 129/152 (84.87%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 3   SGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAA 62
           +G K KKG AGR+ G P+KK VSRSVKAGLQFPVGRIGRYLK GRY++R+GTGAPVYLAA
Sbjct: 8   AGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAA 67

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 122
           VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINP
Sbjct: 68  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP 127

Query: 123 VLLPKK-SERAAAASKEPKSPSKGT-KSPKKA 153
           VLLPKK +E+AAAA KE KSP K   KSPKKA
Sbjct: 128 VLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

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BLAST of Clc04G08720 vs. ExPASy Swiss-Prot
Match: Q94E96 (Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.2e-62
Identity = 129/152 (84.87%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 3   SGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAA 62
           +G K KKG AGR+ G P+KK VSRSVKAGLQFPVGRIGRYLK GRY++R+GTGAPVYLAA
Sbjct: 8   AGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAA 67

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 122
           VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINP
Sbjct: 68  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP 127

Query: 123 VLLPKK-SERAAAASKEPKSPSKGT-KSPKKA 153
           VLLPKK +E+AAAA KE KSP K   KSPKKA
Sbjct: 128 VLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

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BLAST of Clc04G08720 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.2e-70
Identity = 146/152 (96.05%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MDSG KAKKG AGRRGG PKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVYL
Sbjct: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSER AAA KEPKSPSKGTKSPKKA
Sbjct: 121 NPVLLPKKSER-AAAGKEPKSPSKGTKSPKKA 151

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BLAST of Clc04G08720 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.5e-69
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGG-DPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRRGG  PKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERA  A+KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of Clc04G08720 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.5e-69
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGG-DPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRRGG  PKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERA  A+KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of Clc04G08720 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.3e-68
Identity = 147/153 (96.08%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGG-DPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRRGG D KKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERAAAA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAA-KEPKSPSKGTKSPKKA 152

[Close]

BLAST of Clc04G08720 vs. ExPASy TrEMBL
Match: A0A6A3CW06 (Histone H2A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000991pilonHSYRG00051 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 139/152 (91.45%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD G K KKG  GR+GG PKKKPVSRSVKAGLQFPVGRIGRYLK GRYS+RVGTGAPVYL
Sbjct: 1   MDGGAKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSE+  AASKEPKSPSK TKSPKKA
Sbjct: 121 NPVLLPKKSEK--AASKEPKSPSKATKSPKKA 150

[Close]

BLAST of Clc04G08720 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-68
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG K KKG AGRR GG PKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           INP+LLPKKSE+AA+ +K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of Clc04G08720 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-64
Identity = 135/177 (76.27%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG K KKG AGRR GG PKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSE+AA+ +K PKSPSK TKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Clc04G08720 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-52
Identity = 113/153 (73.86%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           M+S  K KK   GR+  G PK K VS+S+KAGLQFPVGRI R+LK GRY++R+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAASKEPKSPSKGTKSPKKA 153
           IN VLLPKKS    A  K  KSP    KSPKKA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSP---VKSPKKA 150

[Close]

BLAST of Clc04G08720 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 198.4 bits (503), Expect = 4.3e-51
Identity = 110/147 (74.83%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 6   KAKKGVAGRRGGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAAVLE 65
           K  +G  GR+GGD +KK VS+SVKAGLQFPVGRI RYLK GRY+ R G+GAPVYLAAVLE
Sbjct: 9   KPTRGAGGRKGGD-RKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLE 68

Query: 66  YLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 125
           YLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVLL
Sbjct: 69  YLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLL 128

Query: 126 PKKSERAAAASKEPKSPSKGTKSPKKA 153
           PKKS     AS      +  TKSPKKA
Sbjct: 129 PKKS----TASSSQAEKASATKSPKKA 150

[Close]

BLAST of Clc04G08720 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-43
Identity = 89/123 (72.36%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 16  GGDPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAAVLEYLAAEVLELA 75
           G    KK  SRS KAGLQFPVGRI R+LKNG+Y+ RVG GAPVYLAAVLEYLAAEVLELA
Sbjct: 9   GSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 76  GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAAA 135
           GNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+  +  +
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKPS 128

Query: 136 SKE 139
           + E
Sbjct: 129 ADE 131

The following BLAST results are available for this feature:

BLAST of Clc04G08720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143711.1	1.9e-69	96.05	histone H2A [Momordica charantia]	[more]
XP_008447608.1	7.2e-69	94.77	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
XP_004142082.1	2.8e-68	96.08	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_038994985.1	3.4e-66	91.45	histone H2A-like [Hibiscus syriacus] >KAE8733755.1 Histone H2A [Hibiscus syriacu...	[more]
XP_039043508.1	5.7e-66	90.79	histone H2A [Hibiscus syriacus] >KAE8664998.1 Histone H2A [Hibiscus syriacus]	[more]

BLAST of Clc04G08720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ46	1.9e-67	88.24	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q9M531	9.2e-67	87.58	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q2HU65	9.5e-64	83.66	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
A2WQG7	5.2e-62	84.87	Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3...	[more]
Q94E96	5.2e-62	84.87	Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 ...	[more]

BLAST of Clc04G08720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR43	9.2e-70	96.05	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A5A7U1I6	3.5e-69	94.77	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	3.5e-69	94.77	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A0A0KXF2	1.3e-68	96.08	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A6A3CW06	1.6e-66	91.45	Histone H2A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000991pilonHSYRG00051 P...	[more]

BLAST of Clc04G08720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	1.3e-68	88.24	histone H2A 12	[more]
AT5G02560.2	1.5e-64	76.27	histone H2A 12	[more]
AT5G59870.1	1.7e-52	73.86	histone H2A 6	[more]
AT5G27670.1	4.3e-51	74.83	histone H2A 7	[more]
AT3G20670.1	1.1e-43	72.36	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 80..94 score: 73.78 coord: 108..126 score: 75.79 coord: 51..66 score: 86.43 coord: 66..79 score: 89.46 coord: 22..44 score: 69.23
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 11..131 e-value: 3.3E-77 score: 272.5
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 14..128 e-value: 3.44243E-66 score: 195.246
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 10..137 e-value: 6.8E-63 score: 212.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 25..128
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 100..133 e-value: 2.6E-18 score: 65.5
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 18..97 e-value: 2.5E-12 score: 47.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..152
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 8..146
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..146
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 30..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G08720.1	Clc04G08720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity