Clc04G08430 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G08430
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	UPF0161 protein At3g09310
Location	ClcChr04: 22127995 .. 22128821 (+)
RNA-Seq Expression	Clc04G08430
Synteny	Clc04G08430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTCTTCCCACCACAAACTGCCATACACCCCAAAACCAGAACCCAATCTTCTTCGCCGGCCGCTGCCATCAACGGCCCTGCACTGCTGCCGGCTTCAGTATTCGATTTAATCGCCGGAAGCTCCGTTGGCCGTTAATCCTAAGCGAAAAGCGCGCCACATCGAACTCAAGCGCGAACAGCGACCAAGGTACTTGCCTTTTCTTCATTCCTTCGTATTTTTATGTTGTCAACGTATAGACTTTCGATGAATTAGGGCATTTGGATTGGCTTCTCAGATGGCGAAGTGGACAATTTGGGGGTTAAAGCTGCATTATCCATGCTTAAATTCTACAAACGTGAGTAGAATGGTGTTATTTGTTCGGTTTTAGGCTTCTAATTCGAAGAATTCTGTCACAGTTCGATCCAATTGAAGATAATACATACCGTTAAGTTATGATTTGGGTAAATGTGAGCAGGAGAAATCTCGCCGTTATTGCCAAATAGTTGTCGCTATTTACCTACATGTAGTGAGTATTCCATGCAAGCTTACAAGAAATATGGTGTTGCGAAGGGTACTATCTTGACTGCTTGGCGTCTCTGTCGCTGCAATCCCCTTGGTAATGACATTGTTCTCATTCAAAGGGAACTCGCAAGATGAGAATCATCTTCTTGAACCTTCAGGAAGGAGGTTTATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGCCGTACAGTTGATTCTAGGCCATTGCGTCCTTGTAGGTGGATCTGGGTTTGATCCTCCTCGGTGGTTTGATGAAGAAAGCTTGCCAGAACCAGAAGATTGA

mRNA sequence

ATGGCGGTTCTTCCCACCACAAACTGCCATACACCCCAAAACCAGAACCCAATCTTCTTCGCCGGCCGCTGCCATCAACGGCCCTGCACTGCTGCCGGCTTCAGTATTCGATTTAATCGCCGGAAGCTCCGTTGGCCGTTAATCCTAAGCGAAAAGCGCGCCACATCGAACTCAAGCGCGAACAGCGACCAAGATGGCGAAGTGGACAATTTGGGGGTTAAAGCTGCATTATCCATGCTTAAATTCTACAAACGAGAAATCTCGCCGTTATTGCCAAATAGTTGTCGCTATTTACCTACATGTAGTGAGTATTCCATGCAAGCTTACAAGAAATATGGTGTTGCGAAGGGTACTATCTTGACTGCTTGGCGTCTCTGTCGCTGCAATCCCCTTGGTGGATCTGGGTTTGATCCTCCTCGGTGGTTTGATGAAGAAAGCTTGCCAGAACCAGAAGATTGA

Coding sequence (CDS)

ATGGCGGTTCTTCCCACCACAAACTGCCATACACCCCAAAACCAGAACCCAATCTTCTTCGCCGGCCGCTGCCATCAACGGCCCTGCACTGCTGCCGGCTTCAGTATTCGATTTAATCGCCGGAAGCTCCGTTGGCCGTTAATCCTAAGCGAAAAGCGCGCCACATCGAACTCAAGCGCGAACAGCGACCAAGATGGCGAAGTGGACAATTTGGGGGTTAAAGCTGCATTATCCATGCTTAAATTCTACAAACGAGAAATCTCGCCGTTATTGCCAAATAGTTGTCGCTATTTACCTACATGTAGTGAGTATTCCATGCAAGCTTACAAGAAATATGGTGTTGCGAAGGGTACTATCTTGACTGCTTGGCGTCTCTGTCGCTGCAATCCCCTTGGTGGATCTGGGTTTGATCCTCCTCGGTGGTTTGATGAAGAAAGCTTGCCAGAACCAGAAGATTGA

Protein sequence

MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSANSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGFDPPRWFDEESLPEPED

Homology

[Close]

BLAST of Clc04G08430 vs. NCBI nr
Match: XP_004142065.1 (UPF0161 protein At3g09310 isoform X1 [Cucumis sativus] >XP_011653638.1 UPF0161 protein At3g09310 isoform X1 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-78
Identity = 144/152 (94.74%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVLPTTNCHT QN NPIFFAGRCHQRPC+AAGFSIRFN RKLR  LILSE RATSNSSA
Sbjct: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNPLGGSGFDPPRWFDEE LPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Clc04G08430 vs. NCBI nr
Match: XP_008448003.1 (PREDICTED: UPF0161 protein At3g09310 [Cucumis melo] >XP_008448011.1 PREDICTED: UPF0161 protein At3g09310 [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 9.4e-77
Identity = 141/152 (92.76%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVLPTTNC+TPQN NPIFF GRCHQRP  AAGFSIRFN RKLR PLILSE RATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNPLGGSGFDPPRWFDEE LPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Clc04G08430 vs. NCBI nr
Match: XP_038882937.1 (UPF0161 protein At3g09310 isoform X3 [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 5.2e-75
Identity = 138/152 (90.79%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVL TTNCH  QNQNP FFAGRCHQRP +AA FSI++NRR LR PLILS+ RATSNSS+
Sbjct: 1   MAVLSTTNCHKLQNQNPSFFAGRCHQRPFSAADFSIQYNRRNLRRPLILSKTRATSNSSS 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED 152

[Close]

BLAST of Clc04G08430 vs. NCBI nr
Match: KAA0032659.1 (UPF0161 protein [Cucumis melo var. makuwa] >TYK23539.1 UPF0161 protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 8.8e-75
Identity = 141/158 (89.24%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVLPTTNC+TPQN NPIFF GRCHQRP  AAGFSIRFN RKLR PLILSE RATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPL------GGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNPL      GGSGFDPPRWFDEE LPEPED
Sbjct: 121 TAWRLCRCNPLGHCCLVGGSGFDPPRWFDEERLPEPED 158

[Close]

BLAST of Clc04G08430 vs. NCBI nr
Match: XP_023518310.1 (UPF0161 protein At3g09310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.6 bits (727), Expect = 4.9e-73
Identity = 136/152 (89.47%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVLPTTNCH  QNQNPIFFAGRCHQ   +AA FSIRFN +KLR PLI+SE RATSNSSA
Sbjct: 1   MAVLPTTNCHKLQNQNPIFFAGRCHQSRRSAAAFSIRFNGQKLRRPLIISESRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NRDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNP G SGFDPPRWFDEE LPEPED
Sbjct: 121 TAWRLCRCNPFGVSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Clc04G08430 vs. ExPASy Swiss-Prot
Match: Q9SR32 (UPF0161 protein At3g09310 OS=Arabidopsis thaliana OX=3702 GN=At3g09310 PE=2 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-38
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 13  QNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSANSDQDG-EVDNL 72
           +N+NP+    R     C       R  + +LR    LS K   S     S QDG E++++
Sbjct: 18  KNRNPL-KPHRQFNESCLRFDHLPRNTKNQLR---CLSAKSTPSKPDPASPQDGEELESV 77

Query: 73  GVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL 132
           GVKAAL+ML+FYKREISP+LP SCRY+PTCSEYSM+AYKKYGV KGT+LT WRLCRCNPL
Sbjct: 78  GVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSMEAYKKYGVLKGTVLTTWRLCRCNPL 137

Query: 133 GGSGFDPPRWFDEESL 148
           GGSGFDPPRWF E  +
Sbjct: 138 GGSGFDPPRWFGESGI 149

[Close]

BLAST of Clc04G08430 vs. ExPASy Swiss-Prot
Match: Q2S3T2 (Putative membrane protein insertion efficiency factor OS=Salinibacter ruber (strain DSM 13855 / M31) OX=309807 GN=SRU_1017 PE=3 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-18
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 77  LSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGF 136
           + +++ Y+  +SP L  +CR+ PTCS Y++QA+++YG  KG +LT  RL RC+P GG G+
Sbjct: 17  IGLVRLYQLVLSPHLGRTCRFHPTCSAYAIQAFREYGALKGLVLTVHRLLRCHPWGGHGY 76

Query: 137 DPPRWFDEE 146
           DPPRWFDEE
Sbjct: 77  DPPRWFDEE 85

[Close]

BLAST of Clc04G08430 vs. ExPASy Swiss-Prot
Match: B0T0Z8 (Putative membrane protein insertion efficiency factor OS=Caulobacter sp. (strain K31) OX=366602 GN=Caul_4526 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 80  LKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGFDPP 139
           LK YK  +SP +   CRYLPTCSEY+ QA K +G  KG+ L   R+CRCNPLGGSG+DPP
Sbjct: 12  LKAYKTTLSPFIGRQCRYLPTCSEYAAQALKDHGPLKGSWLAVGRICRCNPLGGSGYDPP 71

[Close]

BLAST of Clc04G08430 vs. ExPASy Swiss-Prot
Match: Q11SD8 (Putative membrane protein insertion efficiency factor OS=Cytophaga hutchinsonii (strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / NCIMB 9469 / D465) OX=269798 GN=CHU_2420 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.7e-16
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 80  LKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGFDP 139
           +K Y+  ISPLLP +CRY PTCSEY +QA +KYG  KG  L   R+C CNP GGSG+DP
Sbjct: 19  VKIYQYSISPLLPGACRYTPTCSEYCVQAIEKYGPLKGIWLGTKRICSCNPWGGSGYDP 77

[Close]

BLAST of Clc04G08430 vs. ExPASy Swiss-Prot
Match: B0K8I2 (Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=Teth39_2293 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.7e-16
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 79  MLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGFDP 138
           ++K Y+R ISP+ P SCR+ PTCS+YS++A  KYG+ KG I++ WR+ RCNP    G+DP
Sbjct: 8   LIKLYQRYISPMKPRSCRFYPTCSQYSIEAISKYGLLKGGIMSIWRILRCNPFNPGGYDP 67

[Close]

BLAST of Clc04G08430 vs. ExPASy TrEMBL
Match: A0A0A0KXI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296120 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.4e-79
Identity = 144/152 (94.74%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVLPTTNCHT QN NPIFFAGRCHQRPC+AAGFSIRFN RKLR  LILSE RATSNSSA
Sbjct: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNPLGGSGFDPPRWFDEE LPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Clc04G08430 vs. ExPASy TrEMBL
Match: A0A1S3BJN3 (UPF0161 protein At3g09310 OS=Cucumis melo OX=3656 GN=LOC103490314 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.6e-77
Identity = 141/152 (92.76%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVLPTTNC+TPQN NPIFF GRCHQRP  AAGFSIRFN RKLR PLILSE RATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNPLGGSGFDPPRWFDEE LPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Clc04G08430 vs. ExPASy TrEMBL
Match: A0A5A7STY4 (UPF0161 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00430 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 141/158 (89.24%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVLPTTNC+TPQN NPIFF GRCHQRP  AAGFSIRFN RKLR PLILSE RATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPL------GGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNPL      GGSGFDPPRWFDEE LPEPED
Sbjct: 121 TAWRLCRCNPLGHCCLVGGSGFDPPRWFDEERLPEPED 158

[Close]

BLAST of Clc04G08430 vs. ExPASy TrEMBL
Match: A0A6J1EUS1 (UPF0161 protein At3g09310 OS=Cucurbita moschata OX=3662 GN=LOC111438132 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.2e-72
Identity = 135/152 (88.82%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVLPTTNCH  QNQNPIFFAG C +   +AA FSIRFN +KLR PLI+SE RATSNSSA
Sbjct: 1   MAVLPTTNCHKLQNQNPIFFAGGCQKSHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNPLGGSGFDPPRWFDEE LPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Clc04G08430 vs. ExPASy TrEMBL
Match: A0A6J1HNH0 (UPF0161 protein At3g09310 OS=Cucurbita maxima OX=3661 GN=LOC111465896 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 132/152 (86.84%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MAVLPTTNCHTPQNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSA 60
           MAVLPTTNCH  + Q PIFFAG C Q   +AA FSIRFN +KLR PLI+SE RATSNSSA
Sbjct: 1   MAVLPTTNCH--KLQKPIFFAGGCQQTHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRY+PTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NEDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYVPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEESLPEPED 153
           TAWRLCRCNPLGGSGFDPPRWFDEE LPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 150

[Close]

BLAST of Clc04G08430 vs. TAIR 10
Match: AT3G09310.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF37 (InterPro:IPR002696); Has 5781 Blast hits to 5781 proteins in 1903 species: Archae - 0; Bacteria - 3956; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 3; Other Eukaryotes - 1778 (source: NCBI BLink). )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 13  QNQNPIFFAGRCHQRPCTAAGFSIRFNRRKLRWPLILSEKRATSNSSANSDQDG-EVDNL 72
           +N+NP+    R     C       R  + +LR    LS K   S     S QDG E++++
Sbjct: 18  KNRNPL-KPHRQFNESCLRFDHLPRNTKNQLR---CLSAKSTPSKPDPASPQDGEELESV 77

Query: 73  GVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL 132
           GVKAAL+ML+FYKREISP+LP SCRY+PTCSEYSM+AYKKYGV KGT+LT WRLCRCNPL
Sbjct: 78  GVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSMEAYKKYGVLKGTVLTTWRLCRCNPL 137

Query: 133 GGSGFDPPRWFDEESL 148
           GGSGFDPPRWF E  +
Sbjct: 138 GGSGFDPPRWFGESGI 149

The following BLAST results are available for this feature:

BLAST of Clc04G08430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142065.1	1.3e-78	94.74	UPF0161 protein At3g09310 isoform X1 [Cucumis sativus] >XP_011653638.1 UPF0161 p...	[more]
XP_008448003.1	9.4e-77	92.76	PREDICTED: UPF0161 protein At3g09310 [Cucumis melo] >XP_008448011.1 PREDICTED: U...	[more]
XP_038882937.1	5.2e-75	90.79	UPF0161 protein At3g09310 isoform X3 [Benincasa hispida]	[more]
KAA0032659.1	8.8e-75	89.24	UPF0161 protein [Cucumis melo var. makuwa] >TYK23539.1 UPF0161 protein [Cucumis ...	[more]
XP_023518310.1	4.9e-73	89.47	UPF0161 protein At3g09310 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc04G08430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SR32	1.8e-38	58.82	UPF0161 protein At3g09310 OS=Arabidopsis thaliana OX=3702 GN=At3g09310 PE=2 SV=2	[more]
Q2S3T2	3.5e-18	52.17	Putative membrane protein insertion efficiency factor OS=Salinibacter ruber (str...	[more]
B0T0Z8	1.1e-16	61.67	Putative membrane protein insertion efficiency factor OS=Caulobacter sp. (strain...	[more]
Q11SD8	9.7e-16	61.02	Putative membrane protein insertion efficiency factor OS=Cytophaga hutchinsonii ...	[more]
B0K8I2	9.7e-16	53.33	Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter pseu...	[more]

BLAST of Clc04G08430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXI4	6.4e-79	94.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296120 PE=3 SV=1	[more]
A0A1S3BJN3	4.6e-77	92.76	UPF0161 protein At3g09310 OS=Cucumis melo OX=3656 GN=LOC103490314 PE=3 SV=1	[more]
A0A5A7STY4	4.3e-75	89.24	UPF0161 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G0043...	[more]
A0A6J1EUS1	1.2e-72	88.82	UPF0161 protein At3g09310 OS=Cucurbita moschata OX=3662 GN=LOC111438132 PE=3 SV=...	[more]
A0A6J1HNH0	1.6e-69	86.84	UPF0161 protein At3g09310 OS=Cucurbita maxima OX=3661 GN=LOC111465896 PE=3 SV=1	[more]

BLAST of Clc04G08430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09310.1	1.3e-39	58.82	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF37 (...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002696	Putative membrane protein insertion efficiency factor	SMART	SM01234	Haemolytic_2	coord: 72..139 e-value: 6.1E-35 score: 132.1
IPR002696	Putative membrane protein insertion efficiency factor	PFAM	PF01809	YidD	coord: 75..138 e-value: 8.9E-26 score: 89.6
IPR002696	Putative membrane protein insertion efficiency factor	TIGRFAM	TIGR00278	TIGR00278	coord: 78..139 e-value: 4.7E-21 score: 72.4
IPR002696	Putative membrane protein insertion efficiency factor	PANTHER	PTHR33383	MEMBRANE PROTEIN INSERTION EFFICIENCY FACTOR-RELATED	coord: 37..148
IPR002696	Putative membrane protein insertion efficiency factor	HAMAP	MF_00386	UPF0161_YidD	coord: 72..140 score: 20.718416

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G08430.1	Clc04G08430.1	mRNA