Clc04G08250 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G08250
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionC2H2-type domain-containing protein
LocationClcChr04: 22005843 .. 22007116 (+)
RNA-Seq ExpressionClc04G08250
SyntenyClc04G08250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCAAAAGAGTAGAGTATAGATCATTAAAACAGTAAACCCTACCCACCACTTCAATTTCTTCAATCAACTTGACCTTAATTCCCATATATCCCCTTTTTCACCTTAAATATCCATTTTTTTTCAAACACCCATGTAATGCAATTTTCTCATGTCAATTCAATACCTTTTCATTTGAATTGAATTTCATTTTGTTATACCATTTGTTCTCTCGATCCCTAAAGATTCATGGAGCCTAAAAGATGTTGGATGATGTGGGAAAAGAAGAATAAGAAGAAGAAGAATTTGATCACTACTTCTGATCATTATCTTCAAGCAACAACCACAGTCAACATCAACAAATCTTCTTCTTCTTTTGATGATTCATGGGAAGAACAAGCTTTTGCCGACGACGCTGCCGGTCGTTTAGGTGGCTGCGTTTGGCCGCCGAGATCCTACTCTTGCAGTTTCTGCAAAAGAGAATTTCGGTCTGCTCAAGCCCTAGGTGGTCACATGAATGTTCACCGACGCGACCGTGCTAGGTTAAAGCATGAATCTTTCAAACCCCAAATTGAAACCCACCTTCAAATTCCCCCAAATCTTCAACAACAAGTTTGTGATGATAATTTGGTGTTTAACCCTAACCCTAAATCTTCATCATCTTTTTGCCTCTCAACTTTTCCTTCTCAAAACTTGGTGGAATCTGATCTTACCCCAATAACAACAACAACAACTCTTCATAAATGGCATCAAAGTTCAGACCTTTCTCAAAAAAAAAGTGATGATAATGATCTCCTCAAGGATGATGCAGCTGTTTTTTGCAATAAAAGAAAGAGAACAACCGATCATCCGCCATCATCTACGGTGGCGTTCTTTTTCCGATCAGAGGTAATTGGACTTAGCCATAGCTCTGTTGAGGATTTGGATCTCGAGCTCCGCCTCGGTGGCGGTGGCCGGCCAAAGCCAAAGCTTAAATGAAATTGCACCGCCGTGTGTGACTTTATGGTCTACAGTTTGTTTTTCTCTCCGTTGTTTTCATTTTCCTTTTGGAATCTTTCTTTTTTTTGCCTGATCATGTCAGTTCTTGACTACTACTCCTTTTCTCTATCAGCAAGATTGTAGAAAAATTTAACAATATTGCTCACACAAGGAGATCGAAAAAAAAAAATTAAAACTTTAATTTCTTGCTTTCAATAAAATACCCAATAGAGATATATACAACATTTGTAAATTAGGTGCGTATCGATCAAAGTGAGAATATTTACTGTGGAATATTTAAGAGTTTGTGTTCGATCA

mRNA sequence

AACCAAAAGAGTAGAGTATAGATCATTAAAACAGTAAACCCTACCCACCACTTCAATTTCTTCAATCAACTTGACCTTAATTCCCATATATCCCCTTTTTCACCTTAAATATCCATTTTTTTTCAAACACCCATGTAATGCAATTTTCTCATGTCAATTCAATACCTTTTCATTTGAATTGAATTTCATTTTGTTATACCATTTGTTCTCTCGATCCCTAAAGATTCATGGAGCCTAAAAGATGTTGGATGATGTGGGAAAAGAAGAATAAGAAGAAGAAGAATTTGATCACTACTTCTGATCATTATCTTCAAGCAACAACCACAGTCAACATCAACAAATCTTCTTCTTCTTTTGATGATTCATGGGAAGAACAAGCTTTTGCCGACGACGCTGCCGGTCGTTTAGGTGGCTGCGTTTGGCCGCCGAGATCCTACTCTTGCAGTTTCTGCAAAAGAGAATTTCGGTCTGCTCAAGCCCTAGGTGGTCACATGAATGTTCACCGACGCGACCGTGCTAGGTTAAAGCATGAATCTTTCAAACCCCAAATTGAAACCCACCTTCAAATTCCCCCAAATCTTCAACAACAAGTTTGTGATGATAATTTGGTGTTTAACCCTAACCCTAAATCTTCATCATCTTTTTGCCTCTCAACTTTTCCTTCTCAAAACTTGGTGGAATCTGATCTTACCCCAATAACAACAACAACAACTCTTCATAAATGGCATCAAAGTTCAGACCTTTCTCAAAAAAAAAGTGATGATAATGATCTCCTCAAGGATGATGCAGCTGTTTTTTGCAATAAAAGAAAGAGAACAACCGATCATCCGCCATCATCTACGGTGGCGTTCTTTTTCCGATCAGAGGTAATTGGACTTAGCCATAGCTCTGTTGAGGATTTGGATCTCGAGCTCCGCCTCGGTGGCGGTGGCCGGCCAAAGCCAAAGCTTAAATGAAATTGCACCGCCGTGTGTGACTTTATGGTCTACAGTTTGTTTTTCTCTCCGTTGTTTTCATTTTCCTTTTGGAATCTTTCTTTTTTTTGCCTGATCATGTCAGTTCTTGACTACTACTCCTTTTCTCTATCAGCAAGATTGTAGAAAAATTTAACAATATTGCTCACACAAGGAGATCGAAAAAAAAAAATTAAAACTTTAATTTCTTGCTTTCAATAAAATACCCAATAGAGATATATACAACATTTGTAAATTAGGTGCGTATCGATCAAAGTGAGAATATTTACTGTGGAATATTTAAGAGTTTGTGTTCGATCA

Coding sequence (CDS)

ATGGAGCCTAAAAGATGTTGGATGATGTGGGAAAAGAAGAATAAGAAGAAGAAGAATTTGATCACTACTTCTGATCATTATCTTCAAGCAACAACCACAGTCAACATCAACAAATCTTCTTCTTCTTTTGATGATTCATGGGAAGAACAAGCTTTTGCCGACGACGCTGCCGGTCGTTTAGGTGGCTGCGTTTGGCCGCCGAGATCCTACTCTTGCAGTTTCTGCAAAAGAGAATTTCGGTCTGCTCAAGCCCTAGGTGGTCACATGAATGTTCACCGACGCGACCGTGCTAGGTTAAAGCATGAATCTTTCAAACCCCAAATTGAAACCCACCTTCAAATTCCCCCAAATCTTCAACAACAAGTTTGTGATGATAATTTGGTGTTTAACCCTAACCCTAAATCTTCATCATCTTTTTGCCTCTCAACTTTTCCTTCTCAAAACTTGGTGGAATCTGATCTTACCCCAATAACAACAACAACAACTCTTCATAAATGGCATCAAAGTTCAGACCTTTCTCAAAAAAAAAGTGATGATAATGATCTCCTCAAGGATGATGCAGCTGTTTTTTGCAATAAAAGAAAGAGAACAACCGATCATCCGCCATCATCTACGGTGGCGTTCTTTTTCCGATCAGAGGTAATTGGACTTAGCCATAGCTCTGTTGAGGATTTGGATCTCGAGCTCCGCCTCGGTGGCGGTGGCCGGCCAAAGCCAAAGCTTAAATGA

Protein sequence

MEPKRCWMMWEKKNKKKKNLITTSDHYLQATTTVNINKSSSSFDDSWEEQAFADDAAGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNLQQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTTLHKWHQSSDLSQKKSDDNDLLKDDAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGGGRPKPKLK
Homology
BLAST of Clc04G08250 vs. NCBI nr
Match: XP_008448173.1 (PREDICTED: probable transcriptional regulator RABBIT EARS [Cucumis melo] >XP_008448184.1 PREDICTED: probable transcriptional regulator RABBIT EARS [Cucumis melo] >KAA0032675.1 putative transcriptional regulator RABBIT EARS [Cucumis melo var. makuwa] >TYK23558.1 putative transcriptional regulator RABBIT EARS [Cucumis melo var. makuwa])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 225/246 (91.46%), Postives = 230/246 (93.50%), Query Frame = 0

Query: 1   MEPKRCWMMWEKKNKKKKNLITTSD--HYLQATTTVNINKSSSSFDDSWEEQAFADDAAG 60
           MEPKRCWMMWEKK KKKKNLITTS   H+LQATTT  I  SSSSFDDSWEEQAFADDAAG
Sbjct: 1   MEPKRCWMMWEKK-KKKKNLITTSSDHHFLQATTT-TIKSSSSSFDDSWEEQAFADDAAG 60

Query: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNL 120
           RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPP L
Sbjct: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPTL 120

Query: 121 QQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTT-TLHKWHQSSDLSQKKS 180
           QQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTP+TTTT TLHKWHQSSDLSQK S
Sbjct: 121 QQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPLTTTTATLHKWHQSSDLSQKTS 180

Query: 181 DDNDLLKD-DAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGGGR 240
           DDNDLLKD +AAVFCNKRKRT+DH PSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGG  
Sbjct: 181 DDNDLLKDEEAAVFCNKRKRTSDHSPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGG-- 240

Query: 241 PKPKLK 243
            +PKLK
Sbjct: 241 -RPKLK 241

BLAST of Clc04G08250 vs. NCBI nr
Match: XP_038883849.1 (probable transcriptional regulator RABBIT EARS [Benincasa hispida])

HSP 1 Score: 430.6 bits (1106), Expect = 8.7e-117
Identity = 225/247 (91.09%), Postives = 230/247 (93.12%), Query Frame = 0

Query: 1   MEPKRCWMMWEKKNKKKKNLI--TTSDHYLQA-TTTVNINK-SSSSFDDSWEEQAFADDA 60
           MEPKRCWMM EKKNKKKKNL+  T+SDH+LQA TTT+NINK SSSSFDDSWEEQAFADDA
Sbjct: 1   MEPKRCWMMLEKKNKKKKNLMITTSSDHFLQATTTTININKSSSSSFDDSWEEQAFADDA 60

Query: 61  AGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPP 120
           AGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETH QI P
Sbjct: 61  AGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHHQILP 120

Query: 121 NLQQQVCDDNLVFNPNPK-SSSSFCLSTFPSQNLVESDLTPITTTTTLHKWHQSSDLSQK 180
           NLQQQVCDDNLVFNPNPK SSSSFCLSTFPSQNLVESDLTPI TTTTLHKWHQSS+LS K
Sbjct: 121 NLQQQVCDDNLVFNPNPKSSSSSFCLSTFPSQNLVESDLTPI-TTTTLHKWHQSSELSPK 180

Query: 181 KSDDNDLLKDDAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGGG 240
            SDD    KDD AVFCNKRKRTTDHPPSSTVAFF RSEVIGLSHSSVEDLDLELRLGGGG
Sbjct: 181 TSDD----KDDDAVFCNKRKRTTDHPPSSTVAFFIRSEVIGLSHSSVEDLDLELRLGGGG 240

Query: 241 RPKPKLK 243
           RPKPKLK
Sbjct: 241 RPKPKLK 242

BLAST of Clc04G08250 vs. NCBI nr
Match: XP_004142197.1 (probable transcriptional regulator RABBIT EARS [Cucumis sativus] >KGN54274.1 hypothetical protein Csa_018178 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 6.9e-114
Identity = 220/247 (89.07%), Postives = 228/247 (92.31%), Query Frame = 0

Query: 1   MEPKRCWMMWEKKNKKKKNLITTSD--HYLQATTTVNINKSSSSFDDSWEEQAFADDAAG 60
           MEPKRCWMMWEKK KKKKNLITTS   H+LQATTT+   KSSSSFDDSWEEQAFADDAAG
Sbjct: 1   MEPKRCWMMWEKK-KKKKNLITTSSDHHFLQATTTI---KSSSSFDDSWEEQAFADDAAG 60

Query: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNL 120
           RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPP L
Sbjct: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPTL 120

Query: 121 QQQVCDDNLVFNPNPK-SSSSFCLSTFPSQNLVESDLTPITTT-TTLHKWHQSSDLSQKK 180
            QQVCDDNLVF+PNPK SSSSFCLSTFPSQNLVESDLTP+TTT  TLHKWHQSSDLSQK 
Sbjct: 121 HQQVCDDNLVFSPNPKSSSSSFCLSTFPSQNLVESDLTPLTTTAATLHKWHQSSDLSQKT 180

Query: 181 SDDNDLLKD-DAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGGG 240
           SDDNDLL+D +AAVFCNKRKRT+DH PSSTVAF FRSEVIGLSHSSVEDLDLELRLGGG 
Sbjct: 181 SDDNDLLRDEEAAVFCNKRKRTSDHSPSSTVAFIFRSEVIGLSHSSVEDLDLELRLGGG- 240

Query: 241 RPKPKLK 243
             +PKLK
Sbjct: 241 --RPKLK 240

BLAST of Clc04G08250 vs. NCBI nr
Match: XP_022143921.1 (transcriptional regulator SUPERMAN-like [Momordica charantia])

HSP 1 Score: 297.4 bits (760), Expect = 1.2e-76
Identity = 172/258 (66.67%), Postives = 190/258 (73.64%), Query Frame = 0

Query: 2   EPKRCWMMWEKKNKKKKNLIT--TSDHYLQATTTVNINKSSSSFDDSWEEQAFADDAAGR 61
           EPKRCWMMWE K K  K  +T  +SDH+         +K+SSSFDDSWEEQAFA+D AG 
Sbjct: 5   EPKRCWMMWENKKKTIKRNLTAGSSDHHFDQ------SKASSSFDDSWEEQAFAEDTAGH 64

Query: 62  L--GGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPN 121
           L   GCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETH QIPP 
Sbjct: 65  LSGSGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETH-QIPPQ 124

Query: 122 --------LQQQVCDDNLV--FNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTTLHKWH 181
                     + VCDDNLV   NPNP+SSSS  LS  P+QN+ +SDLTPI    TL+K+H
Sbjct: 125 NNPFPFTPSSETVCDDNLVGYNNPNPRSSSSSFLSVLPTQNVEKSDLTPI----TLNKFH 184

Query: 182 QSSDLSQKKSDDNDLLKDDAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDL 241
           QSS+LS+K SD    L D+    C KRKRT     +STVAF FRSEV+GLSH SVEDLDL
Sbjct: 185 QSSELSKKASD----LMDNIDAVCCKRKRT---DAASTVAFIFRSEVLGLSHGSVEDLDL 244

Query: 242 ELRLGG---GGRPKPKLK 243
           ELRLGG   GGRPKPKLK
Sbjct: 245 ELRLGGGGSGGRPKPKLK 244

BLAST of Clc04G08250 vs. NCBI nr
Match: KAG6595337.1 (putative transcriptional regulator RABBIT EARS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285.4 bits (729), Expect = 4.5e-73
Identity = 166/264 (62.88%), Postives = 177/264 (67.05%), Query Frame = 0

Query: 1   MEPKRCWMMW------EKKNKKKKNLITTSDHYLQATTTVNINKSSSSFDDSWEEQAFAD 60
           MEPK CWMMW      E KNK +  L T SDH         +N  +SSFDDSWEEQAFAD
Sbjct: 3   MEPKPCWMMWESKNQNENKNKNENRLTTASDH---------LNNKASSFDDSWEEQAFAD 62

Query: 61  DAAGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQI 120
           DAAGRLGGCVWPPR YSCSFCKREFRSAQALGGHMNVHRRDRA LKHESFKPQIETHLQI
Sbjct: 63  DAAGRLGGCVWPPRFYSCSFCKREFRSAQALGGHMNVHRRDRAMLKHESFKPQIETHLQI 122

Query: 121 PPN--------------LQQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTT 180
           PP                 Q VCD+NL FNPNPKSS +         ++ ESD       
Sbjct: 123 PPKNNPFTSLIDLPQHPSSQFVCDENLAFNPNPKSSQN---------SVDESD------- 182

Query: 181 TTLHKWHQSSDLSQKKSDDNDLLKDDAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHS 240
              HKW QS DLS K +   DL KDDA   C KRKR +DH  +STVAF  RSEVIGLSHS
Sbjct: 183 ---HKWRQSLDLSIKTT---DLFKDDAV--CCKRKR-SDHHSTSTVAFVLRSEVIGLSHS 232

Query: 241 SVEDLDLELRL--GGGGRPKPKLK 243
           S+EDLDLELRL  GGG R KPKLK
Sbjct: 243 SIEDLDLELRLGDGGGSRTKPKLK 232

BLAST of Clc04G08250 vs. ExPASy Swiss-Prot
Match: Q9LHS9 (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 GN=RBE PE=2 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-19
Identity = 82/204 (40.20%), Postives = 106/204 (51.96%), Query Frame = 0

Query: 48  EEQAFAD-DAAGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKP 107
           EE+AFA  +  G  GGC+WPPRSYSCSFC REF+SAQALGGHMNVHRRDRARLK +S  P
Sbjct: 32  EERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSP 91

Query: 108 QIETHLQIPP--NLQQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTTLH 167
              T    PP  + QQQV D           S           N  + +++ +     L 
Sbjct: 92  S-STDQATPPECDRQQQVLD---------VGSKVLVQEETRKPNGTKREISDVCNNNVL- 151

Query: 168 KWHQSSDLSQKKSDDNDLLKDDAAV------FCNKRKRTTDHPPSS------TVAFF--F 227
              +SS   ++   DN  +K D +V      F  ++K+  +   SS       V+ F   
Sbjct: 152 ---ESS--MKRYEHDNGEVKTDLSVGLLSTEFDPRKKQLINGSSSSWKRAKTDVSRFPMM 211

Query: 228 RSEVIGLS--HSSVEDLDLELRLG 233
              VIG+S  +   E+LDLELRLG
Sbjct: 212 LGLVIGISEINGHHEELDLELRLG 219

BLAST of Clc04G08250 vs. ExPASy Swiss-Prot
Match: O80942 (Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 66/143 (46.15%), Postives = 83/143 (58.04%), Query Frame = 0

Query: 41  SSFDDSWEEQAFADDAAGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLK 100
           S+ + SWEE AFA+D A    G +WPPRSY+CSFC+REF+SAQALGGHMNVHRRDRARLK
Sbjct: 13  SNKESSWEELAFAEDDA---AGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRARLK 72

Query: 101 H---------ESFKPQIETHLQIPPNLQQQVCDDNLVFNPNP---KSSSSFCLSTFPSQN 160
                      S  P+  +H +   N+ +  C   LVFN  P   K+  S  +    S +
Sbjct: 73  QADDQYLFPKSSSSPEYPSH-KDSDNIHETSC-YTLVFNTKPNYFKTQHSCVIDLSSSSS 132

Query: 161 LVESDLTPITTTTTL-HKWHQSS 171
           L    LTP   ++ L  K H SS
Sbjct: 133 L--PYLTPSRVSSGLPGKQHTSS 148

BLAST of Clc04G08250 vs. ExPASy Swiss-Prot
Match: Q38895 (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-15
Identity = 68/180 (37.78%), Postives = 86/180 (47.78%), Query Frame = 0

Query: 62  GCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNLQQQ 121
           G  WPPRSY+CSFCKREFRSAQALGGHMNVHRRDRARL+ +       T    PP     
Sbjct: 39  GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSST--PSPPYPNPN 98

Query: 122 VCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTTLHKWHQSSDLSQKKSDDN- 181
                +  +P P  S    L+ FP+       L+P ++        +S     K + +N 
Sbjct: 99  YSYSTMANSPPPHHSP---LTLFPT-------LSPPSSPRYRAGLIRSLSPKSKHTPENA 158

Query: 182 -DLLKDDAAVFCNKRKRTTDHPPSSTVAFFFRSE-------VIGLSHSSVEDLDLELRLG 233
               K    V   +  R T    S       R++        IGL + S +DLDLELRLG
Sbjct: 159 CKTKKSSLLVEAGEATRFT----SKDACKILRNDEIISLELEIGLINESEQDLDLELRLG 202

BLAST of Clc04G08250 vs. ExPASy Swiss-Prot
Match: Q9SLB8 (Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 48/98 (48.98%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 65  WPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNLQQQVCD 124
           WPP++Y+CSFC+REFRSAQALGGHMNVHRRDRA+L+      QI + L  P +       
Sbjct: 44  WPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLR------QIPSWLFEPHH------- 103

Query: 125 DNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTT 163
              + NPNP  SSS   ST  +   +E  LT   + TT
Sbjct: 104 HTPIANPNPNFSSSSSSSTTTAH--LEPSLTNQRSKTT 126

BLAST of Clc04G08250 vs. ExPASy Swiss-Prot
Match: Q9SR34 (Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.4e-07
Identity = 54/165 (32.73%), Postives = 71/165 (43.03%), Query Frame = 0

Query: 68  RSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNLQQQVCDDNL 127
           RSY CSFC R F +AQALGGHMN+HRRDRA+L+ +  +   +  +      +    D N 
Sbjct: 33  RSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQKLMEDNKDDVVAESDASEVVSLDLN- 92

Query: 128 VFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTTLHKWHQSSDLSQKKSDDNDLLKDDA 187
                 +      L+       V++D++P      L  W Q S     K D ND  K   
Sbjct: 93  ----EQQQQQGEALTCDDHDQYVDNDISP---KQKLEFWVQES-----KLDTNDHGKVTE 152

Query: 188 AVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDLELRLG 233
           A        + D   SS              H  +E LDLELRLG
Sbjct: 153 A--------SIDGSSSS-------------HHRDIEVLDLELRLG 163

BLAST of Clc04G08250 vs. ExPASy TrEMBL
Match: A0A1S3BJY1 (probable transcriptional regulator RABBIT EARS OS=Cucumis melo OX=3656 GN=LOC103490450 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.5e-118
Identity = 225/246 (91.46%), Postives = 230/246 (93.50%), Query Frame = 0

Query: 1   MEPKRCWMMWEKKNKKKKNLITTSD--HYLQATTTVNINKSSSSFDDSWEEQAFADDAAG 60
           MEPKRCWMMWEKK KKKKNLITTS   H+LQATTT  I  SSSSFDDSWEEQAFADDAAG
Sbjct: 1   MEPKRCWMMWEKK-KKKKNLITTSSDHHFLQATTT-TIKSSSSSFDDSWEEQAFADDAAG 60

Query: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNL 120
           RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPP L
Sbjct: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPTL 120

Query: 121 QQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTT-TLHKWHQSSDLSQKKS 180
           QQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTP+TTTT TLHKWHQSSDLSQK S
Sbjct: 121 QQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPLTTTTATLHKWHQSSDLSQKTS 180

Query: 181 DDNDLLKD-DAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGGGR 240
           DDNDLLKD +AAVFCNKRKRT+DH PSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGG  
Sbjct: 181 DDNDLLKDEEAAVFCNKRKRTSDHSPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGG-- 240

Query: 241 PKPKLK 243
            +PKLK
Sbjct: 241 -RPKLK 241

BLAST of Clc04G08250 vs. ExPASy TrEMBL
Match: A0A5A7STW0 (Putative transcriptional regulator RABBIT EARS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00660 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.5e-118
Identity = 225/246 (91.46%), Postives = 230/246 (93.50%), Query Frame = 0

Query: 1   MEPKRCWMMWEKKNKKKKNLITTSD--HYLQATTTVNINKSSSSFDDSWEEQAFADDAAG 60
           MEPKRCWMMWEKK KKKKNLITTS   H+LQATTT  I  SSSSFDDSWEEQAFADDAAG
Sbjct: 1   MEPKRCWMMWEKK-KKKKNLITTSSDHHFLQATTT-TIKSSSSSFDDSWEEQAFADDAAG 60

Query: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNL 120
           RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPP L
Sbjct: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPTL 120

Query: 121 QQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTT-TLHKWHQSSDLSQKKS 180
           QQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTP+TTTT TLHKWHQSSDLSQK S
Sbjct: 121 QQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPLTTTTATLHKWHQSSDLSQKTS 180

Query: 181 DDNDLLKD-DAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGGGR 240
           DDNDLLKD +AAVFCNKRKRT+DH PSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGG  
Sbjct: 181 DDNDLLKDEEAAVFCNKRKRTSDHSPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGG-- 240

Query: 241 PKPKLK 243
            +PKLK
Sbjct: 241 -RPKLK 241

BLAST of Clc04G08250 vs. ExPASy TrEMBL
Match: A0A0A0KZM8 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G296275 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.3e-114
Identity = 220/247 (89.07%), Postives = 228/247 (92.31%), Query Frame = 0

Query: 1   MEPKRCWMMWEKKNKKKKNLITTSD--HYLQATTTVNINKSSSSFDDSWEEQAFADDAAG 60
           MEPKRCWMMWEKK KKKKNLITTS   H+LQATTT+   KSSSSFDDSWEEQAFADDAAG
Sbjct: 1   MEPKRCWMMWEKK-KKKKNLITTSSDHHFLQATTTI---KSSSSFDDSWEEQAFADDAAG 60

Query: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNL 120
           RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPP L
Sbjct: 61  RLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPTL 120

Query: 121 QQQVCDDNLVFNPNPK-SSSSFCLSTFPSQNLVESDLTPITTT-TTLHKWHQSSDLSQKK 180
            QQVCDDNLVF+PNPK SSSSFCLSTFPSQNLVESDLTP+TTT  TLHKWHQSSDLSQK 
Sbjct: 121 HQQVCDDNLVFSPNPKSSSSSFCLSTFPSQNLVESDLTPLTTTAATLHKWHQSSDLSQKT 180

Query: 181 SDDNDLLKD-DAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDLELRLGGGG 240
           SDDNDLL+D +AAVFCNKRKRT+DH PSSTVAF FRSEVIGLSHSSVEDLDLELRLGGG 
Sbjct: 181 SDDNDLLRDEEAAVFCNKRKRTSDHSPSSTVAFIFRSEVIGLSHSSVEDLDLELRLGGG- 240

Query: 241 RPKPKLK 243
             +PKLK
Sbjct: 241 --RPKLK 240

BLAST of Clc04G08250 vs. ExPASy TrEMBL
Match: A0A6J1CRR7 (transcriptional regulator SUPERMAN-like OS=Momordica charantia OX=3673 GN=LOC111013721 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 5.6e-77
Identity = 172/258 (66.67%), Postives = 190/258 (73.64%), Query Frame = 0

Query: 2   EPKRCWMMWEKKNKKKKNLIT--TSDHYLQATTTVNINKSSSSFDDSWEEQAFADDAAGR 61
           EPKRCWMMWE K K  K  +T  +SDH+         +K+SSSFDDSWEEQAFA+D AG 
Sbjct: 5   EPKRCWMMWENKKKTIKRNLTAGSSDHHFDQ------SKASSSFDDSWEEQAFAEDTAGH 64

Query: 62  L--GGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPN 121
           L   GCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETH QIPP 
Sbjct: 65  LSGSGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETH-QIPPQ 124

Query: 122 --------LQQQVCDDNLV--FNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTTLHKWH 181
                     + VCDDNLV   NPNP+SSSS  LS  P+QN+ +SDLTPI    TL+K+H
Sbjct: 125 NNPFPFTPSSETVCDDNLVGYNNPNPRSSSSSFLSVLPTQNVEKSDLTPI----TLNKFH 184

Query: 182 QSSDLSQKKSDDNDLLKDDAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSVEDLDL 241
           QSS+LS+K SD    L D+    C KRKRT     +STVAF FRSEV+GLSH SVEDLDL
Sbjct: 185 QSSELSKKASD----LMDNIDAVCCKRKRT---DAASTVAFIFRSEVLGLSHGSVEDLDL 244

Query: 242 ELRLGG---GGRPKPKLK 243
           ELRLGG   GGRPKPKLK
Sbjct: 245 ELRLGGGGSGGRPKPKLK 244

BLAST of Clc04G08250 vs. ExPASy TrEMBL
Match: A0A6J1EUY7 (transcriptional regulator SUPERMAN-like OS=Cucurbita moschata OX=3662 GN=LOC111438197 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.9e-73
Identity = 165/262 (62.98%), Postives = 177/262 (67.56%), Query Frame = 0

Query: 1   MEPKRCWMMWEKK----NKKKKNLITTSDHYLQATTTVNINKSSSSFDDSWEEQAFADDA 60
           MEPK CWMMWE K    NK +  L T SDH         +N  +SSFDDSWEEQAFADDA
Sbjct: 3   MEPKPCWMMWENKNQNENKNENRLTTASDH---------LNNKASSFDDSWEEQAFADDA 62

Query: 61  AGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPP 120
           AGRLGGCVWPPR YSCSFCKREFRSAQALGGHMNVHRRDRA LKHESFKPQIETHLQIPP
Sbjct: 63  AGRLGGCVWPPRFYSCSFCKREFRSAQALGGHMNVHRRDRAMLKHESFKPQIETHLQIPP 122

Query: 121 N--------------LQQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTT 180
                            Q VCD+NL FNPNPKSS +         ++ ESD         
Sbjct: 123 KNNPFTSLIDLPQHPSSQFVCDENLAFNPNPKSSQN---------SVDESD--------- 182

Query: 181 LHKWHQSSDLSQKKSDDNDLLKDDAAVFCNKRKRTTDHPPSSTVAFFFRSEVIGLSHSSV 240
            HKW QS DLS K +   DL KDDA   C KRKR +DH  +STVAF  RSEVIGLSH+S+
Sbjct: 183 -HKWRQSLDLSIKTT---DLFKDDAV--CCKRKR-SDHHSTSTVAFVLRSEVIGLSHNSI 230

Query: 241 EDLDLELRL--GGGGRPKPKLK 243
           EDLDLELRL  GGG R KPKLK
Sbjct: 243 EDLDLELRLGDGGGSRTKPKLK 230

BLAST of Clc04G08250 vs. TAIR 10
Match: AT5G06070.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 7.3e-21
Identity = 82/204 (40.20%), Postives = 106/204 (51.96%), Query Frame = 0

Query: 48  EEQAFAD-DAAGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKP 107
           EE+AFA  +  G  GGC+WPPRSYSCSFC REF+SAQALGGHMNVHRRDRARLK +S  P
Sbjct: 32  EERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSP 91

Query: 108 QIETHLQIPP--NLQQQVCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTTLH 167
              T    PP  + QQQV D           S           N  + +++ +     L 
Sbjct: 92  S-STDQATPPECDRQQQVLD---------VGSKVLVQEETRKPNGTKREISDVCNNNVL- 151

Query: 168 KWHQSSDLSQKKSDDNDLLKDDAAV------FCNKRKRTTDHPPSS------TVAFF--F 227
              +SS   ++   DN  +K D +V      F  ++K+  +   SS       V+ F   
Sbjct: 152 ---ESS--MKRYEHDNGEVKTDLSVGLLSTEFDPRKKQLINGSSSSWKRAKTDVSRFPMM 211

Query: 228 RSEVIGLS--HSSVEDLDLELRLG 233
              VIG+S  +   E+LDLELRLG
Sbjct: 212 LGLVIGISEINGHHEELDLELRLG 219

BLAST of Clc04G08250 vs. TAIR 10
Match: AT2G37740.1 (zinc-finger protein 10 )

HSP 1 Score: 95.1 bits (235), Expect = 8.1e-20
Identity = 66/143 (46.15%), Postives = 83/143 (58.04%), Query Frame = 0

Query: 41  SSFDDSWEEQAFADDAAGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLK 100
           S+ + SWEE AFA+D A    G +WPPRSY+CSFC+REF+SAQALGGHMNVHRRDRARLK
Sbjct: 13  SNKESSWEELAFAEDDA---AGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRARLK 72

Query: 101 H---------ESFKPQIETHLQIPPNLQQQVCDDNLVFNPNP---KSSSSFCLSTFPSQN 160
                      S  P+  +H +   N+ +  C   LVFN  P   K+  S  +    S +
Sbjct: 73  QADDQYLFPKSSSSPEYPSH-KDSDNIHETSC-YTLVFNTKPNYFKTQHSCVIDLSSSSS 132

Query: 161 LVESDLTPITTTTTL-HKWHQSS 171
           L    LTP   ++ L  K H SS
Sbjct: 133 L--PYLTPSRVSSGLPGKQHTSS 148

BLAST of Clc04G08250 vs. TAIR 10
Match: AT4G17810.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-19
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 44 DDSWEEQAFADDAAGRLGGCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRA 98
          D+SWE +AF  D  G + G  WPPRSY+C+FC+REFRSAQALGGHMNVHRRDRA
Sbjct: 20 DESWEVKAFEQDTKGNISGTTWPPRSYTCNFCRREFRSAQALGGHMNVHRRDRA 73

BLAST of Clc04G08250 vs. TAIR 10
Match: AT3G23130.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-16
Identity = 68/180 (37.78%), Postives = 86/180 (47.78%), Query Frame = 0

Query: 62  GCVWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNLQQQ 121
           G  WPPRSY+CSFCKREFRSAQALGGHMNVHRRDRARL+ +       T    PP     
Sbjct: 39  GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSST--PSPPYPNPN 98

Query: 122 VCDDNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTTLHKWHQSSDLSQKKSDDN- 181
                +  +P P  S    L+ FP+       L+P ++        +S     K + +N 
Sbjct: 99  YSYSTMANSPPPHHSP---LTLFPT-------LSPPSSPRYRAGLIRSLSPKSKHTPENA 158

Query: 182 -DLLKDDAAVFCNKRKRTTDHPPSSTVAFFFRSE-------VIGLSHSSVEDLDLELRLG 233
               K    V   +  R T    S       R++        IGL + S +DLDLELRLG
Sbjct: 159 CKTKKSSLLVEAGEATRFT----SKDACKILRNDEIISLELEIGLINESEQDLDLELRLG 202

BLAST of Clc04G08250 vs. TAIR 10
Match: AT2G42410.1 (zinc finger protein 11 )

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-14
Identity = 48/98 (48.98%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 65  WPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKHESFKPQIETHLQIPPNLQQQVCD 124
           WPP++Y+CSFC+REFRSAQALGGHMNVHRRDRA+L+      QI + L  P +       
Sbjct: 44  WPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLR------QIPSWLFEPHH------- 103

Query: 125 DNLVFNPNPKSSSSFCLSTFPSQNLVESDLTPITTTTT 163
              + NPNP  SSS   ST  +   +E  LT   + TT
Sbjct: 104 HTPIANPNPNFSSSSSSSTTTAH--LEPSLTNQRSKTT 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008448173.11.3e-11791.46PREDICTED: probable transcriptional regulator RABBIT EARS [Cucumis melo] >XP_008... [more]
XP_038883849.18.7e-11791.09probable transcriptional regulator RABBIT EARS [Benincasa hispida][more]
XP_004142197.16.9e-11489.07probable transcriptional regulator RABBIT EARS [Cucumis sativus] >KGN54274.1 hyp... [more]
XP_022143921.11.2e-7666.67transcriptional regulator SUPERMAN-like [Momordica charantia][more]
KAG6595337.14.5e-7362.88putative transcriptional regulator RABBIT EARS, partial [Cucurbita argyrosperma ... [more]
Match NameE-valueIdentityDescription
Q9LHS91.0e-1940.20Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 G... [more]
O809421.1e-1846.15Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1[more]
Q388953.4e-1537.78Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 S... [more]
Q9SLB81.4e-1348.98Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1[more]
Q9SR343.4e-0732.73Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A1S3BJY16.5e-11891.46probable transcriptional regulator RABBIT EARS OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A5A7STW06.5e-11891.46Putative transcriptional regulator RABBIT EARS OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0KZM83.3e-11489.07C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G296275 P... [more]
A0A6J1CRR75.6e-7766.67transcriptional regulator SUPERMAN-like OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1EUY72.9e-7362.98transcriptional regulator SUPERMAN-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
Match NameE-valueIdentityDescription
AT5G06070.17.3e-2140.20C2H2 and C2HC zinc fingers superfamily protein [more]
AT2G37740.18.1e-2046.15zinc-finger protein 10 [more]
AT4G17810.11.8e-1972.22C2H2 and C2HC zinc fingers superfamily protein [more]
AT3G23130.12.4e-1637.78C2H2 and C2HC zinc fingers superfamily protein [more]
AT2G42410.11.0e-1448.98zinc finger protein 11 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 70..92
e-value: 0.006
score: 25.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 72..92
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 70..97
score: 11.239817
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 70..94
e-value: 1.1E-6
score: 28.5
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 66..124
e-value: 5.7E-6
score: 28.1
NoneNo IPR availablePANTHERPTHR45801OS07G0101800 PROTEINcoord: 34..232
NoneNo IPR availablePANTHERPTHR45801:SF68CHAIN A, NMR STRUCTURE OF THE SINGLE QALGGH ZINC FINGER DOMAIN FROM ARABIDOPSIS THALIANA SUPERMAN PROTEINcoord: 34..232
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 67..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G08250.1Clc04G08250.1mRNA