Clc04G08020 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G08020
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Chromo domain-containing protein
Location	ClcChr04: 21767310 .. 21772850 (+)
RNA-Seq Expression	Clc04G08020
Synteny	Clc04G08020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACACTCATCCGAAGCTAGCTCCAAGGTTCTTGGGGCCATTTGAGGTCATTGCTTTAGTAGGAAAAGTTGCTTATCGGTTGGGGTTACCAGAAGGTGCCGGGATTCACCCTGTCTTTCACATCTCTCTGTTGCGAAAGGTTGTGGGCAACAATTTGCCAGTAATTCAAATTCCCCCGACCATAGCACCAGACTTGTCTTATGTGTTACAACTAGAAGAAGTCTTGGGTCTGAGGAACTCCCATACGGATGAAGGAGCTTTAGAGGTCCTAATTCCCTGGGAGAATGGTCTTCGAATTCACGCCACATGGGCACTGACTTCATATCAATGGTCAAGTTCATGAATTCCACCTTGAGGACTAATTGGCTCTTTGGGGGGCGGGTAATGATAGCCCCATATTACAAAGGTCTATGTGCATAAGCATGGGAGAAAGCACGGTTAGCACTTGTCTTATGTGTTACAACTAGAAGAAGTCTTGGGTCTGAGGAACTCCCATACGGATGAAGGAGCTTTAGAGGTCCTAATTCCCTGGGAGAATGGTCTTCGAATTCACGCCACATGGGCACTGACTTCATATCAATGGTCAAGTTCATGAATTCCACCTTGAGGACTAATTGGCTCTTTGGGGGGCGGGTAATGATAGCCCCATATTACAAAGGTCTATGTGCATAAGCATAGGAGAAAGCACGGTTAGCACGTGTAAGTTGAATTGTCAATTATTGGTGGGCCCGAAGGAATATAGGTGGAAGAGGAAGTATTATCGGAGTTTTGCTTTCTTGTATTAATTCTCTATATGAGAACTTGGAGGGAAGGGGAGCTCTTGAATTCTCCCTAGACTCTGGATAAATATATTGTTTAGGCCAAGGCCTACCAAAATCATAGGTGTTTCTCTCTCAAAAGAAAAAATTGAATGCTATGTAATGGAATAGTAATTGATTCACACCTTGTTGACCTCTTTTTTTTTTAATTGTTTAGCGAATTGGCATCCTTTGATTGCCTTGCCGAGATTATACTAAGGAGCCTATGGCGCACATATCTCAAGCTCTTTATGTCTAATACTTGTACAGGTACTTATATGTGCTTAGCCAGATAAATTGGAGATAGCATTATCAACAGGGATGAGAATAACTTTTGCTGATTGTAACCACTGTAAAATCAAACCCAGAGGTATCGTTCTTTTACATTTGTCTTGCTTCTGTAGGTTCTTTTCGCTTTGTTAGAATTGCCTTTGCTATTATATGTGTGTAGATAAGACCAACAATTATGCCATCTTGTCTGTTGGTTCGCTTATTGGTTGCAAAATATGCTTTGCTGGTTTTTGATATTGGATTAAAGAGGGTTTAGACAACTTCCGTCTGTCCCACTGAATTTACTCCTACATGTGTCAAAGAACCAACAATTGTAATCCCGTAATTCTAGAAATCCCTTTCACTTTGCAAATTTGTTGGAAACTGGCTAACTCTTCCTACTTCCGTACGAACTCCTCTTATAGGTTTCATTTTAAAGGAAAACCAATGTTATTTGGTGCAATGCTATTAGAGCTCACTTTCATATGTGTGTTTGGCAAGAAATTAAATAATTATTTTGAAGGAGCTAAGCATGTGGGTCGAAGATATTAAACACACCAAAGAAAAGAAATATAATCTTTTATGATCACTATCAATAGGAACACGTTCCTATAATTCCTTGTAGGTTTTTGTATCTTTCATTATTATCAAAATTTACCTTTTTATCACACGCAAATGGAGAAAAAAAGAAGAAACAGTGTCATTTGCGCATTAATGAAGATTATGCAATCCAAATCAACCATGAAACACAAACAAACTTCATATTCTTATTCTTAACCATGAAACACTTCATTTCCTTATCTGTTATCCTAAACTTGACTTGCGGTCTATCCTCCAGACCGGCATCAGCTTCATTTAGAGCATGGTAATTTCAGATTTCAACCATGCACTTTTAAGGAAGTCCTCTTTTCACCTGCTGTGAATACTGATAAATTGTTCAATGTAGTATTCTGACAACAAAATATTATTCTCTCATCCTTTCTAGCTATACTAGTCAGATGATGGTAGGATCTCATAGTTCCCTTCTTTTCTGTCAAATTTTTGTCCAAGCAAATTATGCGATTTCTACTTGCCTTGGTCACAACTCACAAGCATATCGAATTACTTGTACTAGGGCACAGCTTGTGATTGATATCTTAAAATTTAGAATCCAACTTTCTTATAGTCAATCTTTGTAATTGAGTGCTAAGTAATGGATTGGTGGCAAAGTCATATTTTGTAGCTAGCAAGTCTCTTTATCCTTTAATCATTTAACGGCCTCGCATCTATTGATTGACTTATATTGATAATACTAACGGCGCACATATCTCATGCACTTTATGTCAAATACACGTATAGGAACTTTTACATGCTTAGTCTGATAAGTTGGAGATATCATTATCCTCACGAATGGAATTGCTTTGACTGGATATAAAACTCAGGTACCGTTGTTCTTAAACAATTTTCTACTCTCTAGGGTTTTCTTGCTCTGTTAAAATTGTCCAGTTGCTGTAGATTTACTGACAAGGCCAAAGCGACAGTCCTTTTCGTTTGGCCCTTGGTTCATTTGTGTTGATGCTTTGTTTTTTCTTGTCTTCCTGGCCGAAGAGATATATTCAACTGGTTTTAGAAATAGTTACTTTCTCCTTAATTGGTCCAATAAGATCAAGTCATAATGCCTTTATTTAGTTTGTAAGCAGAGTCAACCACCATAATCCCTTCTATCCTCTGGTTTCCACATCTTTTACGTAAGTGTATTTGCATAGTGGATTTTTGTGCATCTCTTTTTTAAGCCACTCGAATTTATCTCAATGGATTTTAGGTTCTGTCACAAACTGGCACTAGTTCTAGAATTATAATAGTGCTATTTTTAGATAAGAATTTTGCATGTTGCAAAATAGTTCTTTGTCATTAACTCTTGATAAGTTTGACTTCTGCATAGGTGGGCGGCTATTTCAACCTTCTTGCTTGTTCGTAACCTTATAGATTTTCTTCCTTTTTGCTCCCCTTTAAAAACTTGTGGTAAGAACACATCCATTTTACCAATATGAAAAAAAAAGCTTCCATTTTTAGAGAGGGATATAGCATTATATAGAGTTAAAATTAGTAACGTCAAATAAAACTTGTTTAAGTTATTTCCAGAGGAAGATGCGTAGCAAATAAAAGCTAACAATCTTCTATGCCTTTTTATCAACGAAGATTCACAGAATTAAATCAAGATCTTCAATTCATAACCTAGATTTGGAACCATAAAGGTAATTGAGGAAAAGGAGGTGATCCAATTGTTGTCCTGTACTGGGCTTTGATCTTTTTGAAACAGGAATGAGCAAGAGGCGTTTAGAGCTTTTTCTTACCTCCATTTTATAAACAGAATTTTTGCGGTAATAGCAAATGTGGTCTAAATAGCAGATTTATCCCTAGTAAAACATTTTACAAAGTATATTACTGATGTAGTTTTACATTAGGTATAGGATTGGTTGCAAATATAGCAGTCAAGGCCAAACTCTTTGAAAATATAGTAAAATGTAAAACATCTTAGATATAACAAAAATTAGATACAATCCCTAGAAAATTCTGATAAAGCCTATTGAATAGCCATCAAACCTATCAACAACCATCGTTTTCATGGCTTTTTGCACTGTGAACATGTTTGATTCAGTGGAACTTGACAGGTTGGTTGTTGATGGGCTTGATGGCCATTCGATGGGCTTTTTGGGAATTTTATATAGGTTATATCGAATTTTTGTTATATTTGTAATTTTTTAGACAATTTGTTATATTTGCAATTAATTTGGACTTAATTGTTATATTTGCAACTAACCTTGAACTCGTTAAAATTAAGACCAAGTTGGAAATAAGAATGTTAAAAGTGTTTTTTAACCTATATTTTATAAATTATACAAAATTGTTAATGGGTGATGTACTTTATATTGGGTTGTCTTAATAAAAAAAATATTGTAAATAAGTGATCTGCAAGGAGAAAAATTATGATATTTACAAATTTTGCCATTCATTACAGTTTTCCTTTGTAAGTAAGAAACACGTGGCTTAGTTTGTGGCTATTTCACAAACTATCGATGAGTGGGATAACATGTTTGTGGATCATATTGAATACTTGAATACTCCTATACTTGTCTGACGTGTGGAATACTTGTTGAATACATTGAATTGGAGAGAGACTTATTAAGCATATTGGACAAATGTATTTGAACTGGAATGTAAAATCTGTAATTTTTTACTTTTTGTTTGAAAAAATTGATCGTAATAGGAAATCAAATTCTGAGAATGAAACATACCAATTTTGTATTAAAGCATAAAAGTATGGAGATATTACTAATTAGTTGCTATTGAGCATTTAAAAATAAGTTTTTTCTTTTATCCAGTTTAATAACCATTTTGTTTTTTATTTTCTGTTTTTGAAAATTATATTTTGTTTCTCACATGTTTTCCTATTAGTTTCTCTCACTTTTTTAATTTTCAAAATTTAGGTTGAATTTTTAAAAAGTAGGTTAAAATAGGAAAATTATAAGTAGTAGTATTTATAAACTTGATTTTAGGAAACAGAAAACTAAGAAGTAGTTATAAAAATGGACCCTCATTATTTATTTTTAGATCTGAGCTCTTTGCTAAAAGCCTAAAACTAAAAGGTATTGCATGTTCTATCTCAATTCTTTCATATTTTCATATACAAAAATCATAAACTAAAACATTAAAAATTCATTGAAATCTACGAAATATTCAAACGTATATAATGTGTCTTTCCCTTGTTCTTGGCTTGATCTTTTACTAACTGGTGTGTGTGCCTATGCCTCGTATCTCCGCCAGCGACGTGTTTGTTTTGGTAATGGTTTTTTGGGGTGGTGCATGGAACTGAAACACTTTTAGGAAAAGCACTTTAAGAGTGGTATAATTTTGAAATAAAGATTGATTAGAAGAATTTTTCGTGCTTGCAAAGAATAAAGAGATTCTAAAAATTCTAAAAGTACTAAAGACTTCAGATTGGTGGTTTAGACAAAGCACATAACTTGTGCTTATTCTACTAGAAGCTGTACTTTGCTTAGAAATTTAAGTACTGCTAGCAAAAGCCATTCTAAACTCATTTTGTAGTTTGCTTAAATTTTTCAAAAGCACGATTATCTGATCAAATCTTGAAAGATTTTGAAAGGTGCTTCAAGTTACCTAAAAGGGCAATTCACTGTTTCAAAAGTCATTGTTAAACCTACTCTCAATTTGTTAGGATCTACCTACTGATATGCCAGGAGTATTGGTAAGATCTAGGGTTTATTGTTGAGGTTTATGATCTGTCTGATAATATAGTACTAATCTGCCTCCAGCATCTTTTATTGGTTTAAGATAATTTGAAGAGATGTAAAGCAGTAAACTCCCTTTTATTTAACAAAGATAGATTGTCCAGCTACCATTGTAATCACTTCTATCCATTAATGGATTACTCTGTTTCTTTACAGCATCAGCCTCTAGAAGACTCATAA

mRNA sequence

ATGAAGTACACTCATCCGAAGCTAGCTCCAAGGTTCTTGGGGCCATTTGAGGTCATTGCTTTAGTAGGAAAAGTTGCTTATCGGTTGGGGTTACCAGAAGGTGCCGGGATTCACCCTGTCTTTCACATCTCTCTGTTGCGAAAGGTTGTGGGCAACAATTTGCCAGTAATTCAAATTCCCCCGACCATAGCACCAGACTTGTCTTATGTGTTACAACTAGAAGAAGTCTTGGGTCTGAGGAACTCCCATACGGATGAAGGAGCTTTAGAGGTCCTAATTCCCTGGGAGAATGGTCTTCGAATTCACGCCACATGGGCACTGACTTCATATCAATGCGAATTGGCATCCTTTGATTGCCTTGCCGAGATTATACTAAGGAGCCTATGGCGCACATATCTCAAGCTCTTTATGTCTAATACTTGTACAGTTGGAGATATCATTATCCTCACGAATGGAATTGCTTTGACTGGATATAAAACTCAGCATCAGCCTCTAGAAGACTCATAA

Coding sequence (CDS)

ATGAAGTACACTCATCCGAAGCTAGCTCCAAGGTTCTTGGGGCCATTTGAGGTCATTGCTTTAGTAGGAAAAGTTGCTTATCGGTTGGGGTTACCAGAAGGTGCCGGGATTCACCCTGTCTTTCACATCTCTCTGTTGCGAAAGGTTGTGGGCAACAATTTGCCAGTAATTCAAATTCCCCCGACCATAGCACCAGACTTGTCTTATGTGTTACAACTAGAAGAAGTCTTGGGTCTGAGGAACTCCCATACGGATGAAGGAGCTTTAGAGGTCCTAATTCCCTGGGAGAATGGTCTTCGAATTCACGCCACATGGGCACTGACTTCATATCAATGCGAATTGGCATCCTTTGATTGCCTTGCCGAGATTATACTAAGGAGCCTATGGCGCACATATCTCAAGCTCTTTATGTCTAATACTTGTACAGTTGGAGATATCATTATCCTCACGAATGGAATTGCTTTGACTGGATATAAAACTCAGCATCAGCCTCTAGAAGACTCATAA

Protein sequence

MKYTHPKLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPPTIAPDLSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHATWALTSYQCELASFDCLAEIILRSLWRTYLKLFMSNTCTVGDIIILTNGIALTGYKTQHQPLEDS

Homology

[Close]

BLAST of Clc04G08020 vs. NCBI nr
Match: KAA0036835.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95902.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 9.9e-27
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 3   YTHPKLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPPT 62
           ++HPKLAPR++GP++V++ VGKVAY L L    GI+PVFH+S+L+K    NLP++ IP  
Sbjct: 35  HSHPKLAPRYVGPYQVVSRVGKVAYNLALLPTWGIYPVFHVSVLKKATSTNLPILPIPTN 94

Query: 63  IAPDLSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHAT 105
           +APDLS+VLQ  EVLGLRNS T+EG+ EVLI WE+   I AT
Sbjct: 95  LAPDLSFVLQPAEVLGLRNSPTEEGSSEVLIRWEHSFPIDAT 136

[Close]

BLAST of Clc04G08020 vs. NCBI nr
Match: KAA0039528.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-22
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 3   YTHPKLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPPT 62
           + HPKLAP F+ PF ++A +G+VAYRL LP+ + IHPVFH+S+L K VG+N P+  IP  
Sbjct: 667 FKHPKLAPSFISPFMIVARIGQVAYRLALPKESLIHPVFHVSVLCKAVGSNRPLFPIPKD 726

Query: 63  IAPDLSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHATW 106
           +A DLS  L L EVLG+R +   E  LEVLI W  G    ATW
Sbjct: 727 LAVDLSMQLYLVEVLGVRKTREKEDNLEVLIRWSEGTPESATW 769

[Close]

BLAST of Clc04G08020 vs. NCBI nr
Match: PWA91318.1 (Ty3/gypsy retrotransposon protein [Artemisia annua])

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-17
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 2    KYTHPKLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPP 61
            K  + KLAPR+ GPFEV+  +G VAYRL LPE A IHPVFH+S L+KVVG+       P 
Sbjct: 1378 KRLNEKLAPRYFGPFEVLEKIGAVAYRLKLPETASIHPVFHVSQLKKVVGDQAVETDFPK 1437

Query: 62   TIAPDLSYVLQLEEVLGLR----NSHTDEGALEVLIPWENGLRIHATW 106
             ++ D+  ++Q +EVLG+R    NS  D    EVLI W+N     +TW
Sbjct: 1438 ELSNDMEMMVQPQEVLGVREGKSNSKEDR---EVLIRWKNLPGYESTW 1482

[Close]

BLAST of Clc04G08020 vs. NCBI nr
Match: PKU61033.1 (hypothetical protein MA16_Dca029063 [Dendrobium catenatum])

HSP 1 Score: 97.8 bits (242), Expect = 9.3e-17
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 7   KLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPPTIAPD 66
           KL+PR+ GP+EV+  +G VAYRL LP  A IHPVFH+S LRK +G+     ++P T+  D
Sbjct: 39  KLSPRYFGPYEVLERIGAVAYRLKLPPTATIHPVFHVSQLRKAIGDYTANPELPATLTED 98

Query: 67  LSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHATW 106
           L  VL+  E++G+R    +EG  EVLI W+N     ATW
Sbjct: 99  LEVVLEPLELMGVRQK--EEGTKEVLIQWKNLPDYEATW 135

[Close]

BLAST of Clc04G08020 vs. NCBI nr
Match: XP_028550273.1 (uncharacterized protein LOC110114341 [Dendrobium catenatum])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 7   KLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPPTIAPD 66
           KLAPRF GP+E++  +G VAYRL LP  A IHPVFH+  LR+ +G+    +++P T+  D
Sbjct: 150 KLAPRFFGPYEILEKIGAVAYRLKLPLMATIHPVFHVLQLRRAIGDYTASLELPATLTKD 209

Query: 67  LSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHATW 106
           L  +++  E++G+R    +EGA EVLI W+N     ATW
Sbjct: 210 LEVIMEPLELMGVRQK--EEGAKEVLIKWKNLPDYDATW 246

[Close]

BLAST of Clc04G08020 vs. ExPASy TrEMBL
Match: A0A5D3B7S6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002050 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.8e-27
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 3   YTHPKLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPPT 62
           ++HPKLAPR++GP++V++ VGKVAY L L    GI+PVFH+S+L+K    NLP++ IP  
Sbjct: 35  HSHPKLAPRYVGPYQVVSRVGKVAYNLALLPTWGIYPVFHVSVLKKATSTNLPILPIPTN 94

Query: 63  IAPDLSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHAT 105
           +APDLS+VLQ  EVLGLRNS T+EG+ EVLI WE+   I AT
Sbjct: 95  LAPDLSFVLQPAEVLGLRNSPTEEGSSEVLIRWEHSFPIDAT 136

[Close]

BLAST of Clc04G08020 vs. ExPASy TrEMBL
Match: A0A5D3CTU6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00600 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.1e-22
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 3   YTHPKLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPPT 62
           + HPKLAP F+ PF ++A +G+VAYRL LP+ + IHPVFH+S+L K VG+N P+  IP  
Sbjct: 667 FKHPKLAPSFISPFMIVARIGQVAYRLALPKESLIHPVFHVSVLCKAVGSNRPLFPIPKD 726

Query: 63  IAPDLSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHATW 106
           +A DLS  L L EVLG+R +   E  LEVLI W  G    ATW
Sbjct: 727 LAVDLSMQLYLVEVLGVRKTREKEDNLEVLIRWSEGTPESATW 769

[Close]

BLAST of Clc04G08020 vs. ExPASy TrEMBL
Match: A0A803PSM5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 2    KYTHPKLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPP 61
            K  + KLAPRF GPF V+A VG  AYRL LP  A IHPVFH+SLLR  +G +     +PP
Sbjct: 1241 KRCNEKLAPRFFGPFPVLARVGPAAYRLQLPPAAAIHPVFHVSLLRAALGPHQQPTTLPP 1300

Query: 62   TIAPDLSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHATW 106
            T+  DL ++L+ EEVL +R   T + A + LI W N     ATW
Sbjct: 1301 TLTADLEWLLEPEEVLAIRPG-THKMAPQALIKWANLPAFEATW 1343

[Close]

BLAST of Clc04G08020 vs. ExPASy TrEMBL
Match: A0A1J3HUG3 (Transposon Ty3-G Gag-Pol polyprotein OS=Noccaea caerulescens OX=107243 GN=LE_TR5445_c0_g1_i1_g.20215 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 6    PKLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPPTIAP 65
            PKLA RF GP+EV+A VG  AY+L LPEG+ IHPVFH+S L+K VGN+  +  +P T+  
Sbjct: 1422 PKLAARFFGPYEVLAKVGNAAYKLALPEGSKIHPVFHVSQLKKAVGNDQQLQPLPLTVTD 1481

Query: 66   DLSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHATWALTS 110
              +  L+ EEVL  R S T  G +E+LI W+      +TW L++
Sbjct: 1482 LRTVDLEPEEVLAKRYSQT--GCVELLIKWKGEPDHESTWVLSA 1523

[Close]

BLAST of Clc04G08020 vs. ExPASy TrEMBL
Match: A0A1J3DTQ0 (Chromo domain-containing protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR19270_c8_g1_i1_g.62642 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 6   PKLAPRFLGPFEVIALVGKVAYRLGLPEGAGIHPVFHISLLRKVVGNNLPVIQIPPTIAP 65
           PKLA RF GP+EV+A VG  AY+L LPEG+ IHPVFH+S L+K VGN+  +  +P T+  
Sbjct: 47  PKLAARFFGPYEVLAKVGNAAYKLALPEGSKIHPVFHVSQLKKAVGNDQQLQPLPLTVTD 106

Query: 66  DLSYVLQLEEVLGLRNSHTDEGALEVLIPWENGLRIHATWALTS 110
             +  L+ EEVL  R S T  G +E+LI W+      +TW L++
Sbjct: 107 LRTVDLEPEEVLAKRYSQT--GCVELLIKWKGEPDHESTWVLSA 148

The following BLAST results are available for this feature:

BLAST of Clc04G08020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036835.1	9.9e-27	58.82	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95902.1 Ty3/gyp...	[more]
KAA0039528.1	4.3e-22	53.40	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gyp...	[more]
PWA91318.1	7.1e-17	48.15	Ty3/gypsy retrotransposon protein [Artemisia annua]	[more]
PKU61033.1	9.3e-17	48.48	hypothetical protein MA16_Dca029063 [Dendrobium catenatum]	[more]
XP_028550273.1	1.2e-16	46.46	uncharacterized protein LOC110114341 [Dendrobium catenatum]	[more]

BLAST of Clc04G08020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G08020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B7S6	4.8e-27	58.82	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CTU6	2.1e-22	53.40	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A803PSM5	4.1e-18	50.00	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A1J3HUG3	2.6e-17	48.08	Transposon Ty3-G Gag-Pol polyprotein OS=Noccaea caerulescens OX=107243 GN=LE_TR5...	[more]
A0A1J3DTQ0	2.6e-17	48.08	Chromo domain-containing protein (Fragment) OS=Noccaea caerulescens OX=107243 GN...	[more]

BLAST of Clc04G08020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 36..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G08020.1	Clc04G08020.1	mRNA