Clc04G07920 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G07920
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr04: 21665710 .. 21666113 (-)
RNA-Seq Expression	Clc04G07920
Synteny	Clc04G07920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACTTCAAGGTTATTAGATCCTAATCTTATAATGTGATGAGTTGATATATCTTTAGCTGTTATATGGCTAAATAACTGACTTATTTTTAGGTTGTACCTGCGATAGTGAAAGCTGTTGAAAGCAAAGGAGAAGAGATAGAGAAGGCTGTGGAAGAAGTGAAGGGGGCATTGGAACCACTTGAGAAAGAATTGGGTTTGTGGACATTGTAGGCACCGCCGTAGCCTGCTGGTTGCCTGCCATTGAAGAAGCTTTAAGGATTGAGCTGCTAACAACCCACAAATTTCCAAACCTAAGACTATGGAGTGAAGAGCTTTCCAACCACAACGTGGTGAAGGAGCTTCTGCCTAAAAAGGATGAGGTTGTTGCCTTTGTGCAAGCTATTTTCTCCAAGAATTAA

mRNA sequence

ATGGCCGACTTCAAGGTTGTACCTGCGATAGTGAAAGCTGTTGAAAGCAAAGGAGAAGAGATAGAGAAGGCTGTGGAAGAAGTGAAGGGGGCATTGGAACCACTTGAGAAAGAATTGGAGCTTTCCAACCACAACGTGGTGAAGGAGCTTCTGCCTAAAAAGGATGAGGTTGTTGCCTTTGTGCAAGCTATTTTCTCCAAGAATTAA

Coding sequence (CDS)

ATGGCCGACTTCAAGGTTGTACCTGCGATAGTGAAAGCTGTTGAAAGCAAAGGAGAAGAGATAGAGAAGGCTGTGGAAGAAGTGAAGGGGGCATTGGAACCACTTGAGAAAGAATTGGAGCTTTCCAACCACAACGTGGTGAAGGAGCTTCTGCCTAAAAAGGATGAGGTTGTTGCCTTTGTGCAAGCTATTTTCTCCAAGAATTAA

Protein sequence

MADFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKELELSNHNVVKELLPKKDEVVAFVQAIFSKN

Homology

[Close]

BLAST of Clc04G07920 vs. NCBI nr
Match: XP_008448606.1 (PREDICTED: probable glutathione S-transferase [Cucumis melo] >KAA0045119.1 putative glutathione S-transferase [Cucumis melo var. makuwa] >TYK23618.1 putative glutathione S-transferase [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-05
Identity = 45/116 (38.79%), Postives = 53/116 (45.69%), Query Frame = 0


Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV  + K   SKGEE+EKAVEEVK ALEPLEKEL                       
Sbjct: 103 DGKVVSTLGKIRGSKGEEMEKAVEEVKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N+NVVKEL+PKKD++VA  + I  KN
Sbjct: 163 WIPASEEALGIELLTSHKFPNLIHWIEELANNNVVKELIPKKDDLVAHFKTILGKN 218

[Close]

BLAST of Clc04G07920 vs. NCBI nr
Match: XP_011653660.1 (glutathione S-transferase U8 [Cucumis sativus] >KGN54314.1 hypothetical protein Csa_017953 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 8.1e-04
Identity = 42/116 (36.21%), Postives = 51/116 (43.97%), Query Frame = 0


Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV A+ K   SKGE IE+AVEE K ALEPLEKEL                       
Sbjct: 103 DGKVVSALGKVCGSKGEVIEEAVEEAKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N NVVKEL+PKKD++V  ++ +  KN
Sbjct: 163 WIPASEEALGIEMLTAHKFPNLIQWIEELANDNVVKELIPKKDDLVTHMKTVLGKN 218

[Close]

BLAST of Clc04G07920 vs. ExPASy TrEMBL
Match: A0A5D3DJF9 (Putative glutathione S-transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001320 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 45/116 (38.79%), Postives = 53/116 (45.69%), Query Frame = 0


Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV  + K   SKGEE+EKAVEEVK ALEPLEKEL                       
Sbjct: 103 DGKVVSTLGKIRGSKGEEMEKAVEEVKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N+NVVKEL+PKKD++VA  + I  KN
Sbjct: 163 WIPASEEALGIELLTSHKFPNLIHWIEELANNNVVKELIPKKDDLVAHFKTILGKN 218

[Close]

BLAST of Clc04G07920 vs. ExPASy TrEMBL
Match: A0A1S3BJG8 (probable glutathione S-transferase OS=Cucumis melo OX=3656 GN=LOC103490729 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 45/116 (38.79%), Postives = 53/116 (45.69%), Query Frame = 0


Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV  + K   SKGEE+EKAVEEVK ALEPLEKEL                       
Sbjct: 103 DGKVVSTLGKIRGSKGEEMEKAVEEVKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N+NVVKEL+PKKD++VA  + I  KN
Sbjct: 163 WIPASEEALGIELLTSHKFPNLIHWIEELANNNVVKELIPKKDDLVAHFKTILGKN 218

[Close]

BLAST of Clc04G07920 vs. ExPASy TrEMBL
Match: A0A0A0KZS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303130 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-04
Identity = 42/116 (36.21%), Postives = 51/116 (43.97%), Query Frame = 0


Query: 3   DFKVVPAIVKAVESKGEEIEKAVEEVKGALEPLEKEL----------------------- 62
           D KVV A+ K   SKGE IE+AVEE K ALEPLEKEL                       
Sbjct: 103 DGKVVSALGKVCGSKGEVIEEAVEEAKEALEPLEKELKSNKFFGGEKIGFLDIVGILIAF 162

Query: 63  ---------------------------ELSNHNVVKELLPKKDEVVAFVQAIFSKN 69
                                      EL+N NVVKEL+PKKD++V  ++ +  KN
Sbjct: 163 WIPASEEALGIEMLTAHKFPNLIQWIEELANDNVVKELIPKKDDLVTHMKTVLGKN 218

The following BLAST results are available for this feature:

BLAST of Clc04G07920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448606.1	5.6e-05	38.79	PREDICTED: probable glutathione S-transferase [Cucumis melo] >KAA0045119.1 putat...	[more]
XP_011653660.1	8.1e-04	36.21	glutathione S-transferase U8 [Cucumis sativus] >KGN54314.1 hypothetical protein ...	[more]

BLAST of Clc04G07920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G07920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJF9	2.7e-05	38.79	Putative glutathione S-transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BJG8	2.7e-05	38.79	probable glutathione S-transferase OS=Cucumis melo OX=3656 GN=LOC103490729 PE=3 ...	[more]
A0A0A0KZS0	3.9e-04	36.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303130 PE=3 SV=1	[more]

BLAST of Clc04G07920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G07920.1	Clc04G07920.1	mRNA