Clc04G07730 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G07730
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-CH-type domain-containing protein
Location	ClcChr04: 21506634 .. 21507875 (+)
RNA-Seq Expression	Clc04G07730
Synteny	Clc04G07730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGCGGCAACGGCGGAGAGGGGAAGTGGATTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGATTGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGTGAGTTAATTTCTTCCCTAAATAATGATGATTATGAGATAGATTATGAAATCGTTAAAATCAAGTTTGTCAAATTTAAATTTAAAATTTTTTAAGAAGGGCTCAACCTCTAAATCTAACATTCTAGTGGAAAAATAAAGATTGTGATAGATACAACTATCACATCAAGACTATGACAGACATGAATATTTCTAACACGATACAATACAAAAGTGGTTCTTTAATATAAACAAATGATTAGAGTTGATTTGTGTTTGGTGGGTCATGAATTTTCTTCATTTACAGATTGAGAATAGGTAATTCGAAGGAAAAAAAGAAAAACTCTTTAAAATCACTTTGAAAACTTTTTAATTATTTAGGTCAGTTTTGATGATATAAAATTGTGTTTAAGAGGGTAAAACTAAATAGTAAATACTAAATTCATGTGAGTGAAGCATTCCCAATAAGGAATGGAATAGAACAGGGAATTAAGTGAGTGAAGCATTTTTTTAAGGAAAAAAAAATTCCTTGGACTTTGTCTCACTTTACTAACTCTCTACCTTGTATTAATTATTCTCTTACCTTTTAAGTTTTATAAACATTGGAATCTCTTCTTGCTCTATTTATTTATTTATTTATTTTACTTTTTTAGGTTTATTTTGAAAATGATGTGAGTGTGTATATATATTTGATCAATTTAAGTTAATAAGTTCAAATATTTTAGTTTTAATTTGGATGGGGTTGGTTTTTTGTTAGGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCATCGGTGGCTGCCGCTCCTAGTGGTGGCCGGAGCTTTTGGCATGTTCACCGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA

mRNA sequence

ATGGCAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGCGGCAACGGCGGAGAGGGGAAGTGGATTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGATTGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCATCGGTGGCTGCCGCTCCTAGTGGTGGCCGGAGCTTTTGGCATGTTCACCGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA

Coding sequence (CDS)

ATGGCAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGCGGCAACGGCGGAGAGGGGAAGTGGATTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGATTGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCATCGGTGGCTGCCGCTCCTAGTGGTGGCCGGAGCTTTTGGCATGTTCACCGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA

Protein sequence

MAALETAGADLEKEWQRAAAAATAERGSGFGEVKVKLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS

Homology

[Close]

BLAST of Clc04G07730 vs. NCBI nr
Match: XP_038883458.1 (uncharacterized protein LOC120074413 [Benincasa hispida])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 148/170 (87.06%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MAALETAGADLEKEWQRAAAAATAERGSGFG-EVKV-KLERDCRICHLGLESNSSEFGVG 60
           MAALETAGADLEK W++ A    AERGSG G EVKV  LERDCRICHLGL SNS+EFGVG
Sbjct: 1   MAALETAGADLEKGWRQTA----AERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVG 60

Query: 61  IELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGT 120
           IELGCCCKNDL  AHKHCAEAWFKIRGNKTCEICHSIVRNVMV  E EQTEQ+H SNNGT
Sbjct: 61  IELGCCCKNDLSTAHKHCAEAWFKIRGNKTCEICHSIVRNVMVVREPEQTEQLHESNNGT 120

Query: 121 VSTATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 169
           VSTATVAASVAA PSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 121 VSTATVAASVAATPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 166

[Close]

BLAST of Clc04G07730 vs. NCBI nr
Match: KAG7027374.1 (hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 7.3e-62
Identity = 127/168 (75.60%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MAALETAGADLEKEWQRAAAAATAERGSGFGEVKVKLERDCRICHLGLESNSSEFGVGIE 60
           MAALETAG DLE+            RG+  GEVKV  ERDCRICHLGLESNSSE G  IE
Sbjct: 1   MAALETAGVDLEE----GGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIE 60

Query: 61  LGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVS 120
           LGC CKNDL AAHKHCAEAWFKIRGNKTCEICHSIV+NV V HE EQ EQ+H  NNGT+S
Sbjct: 61  LGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGV-HELEQMEQLHEFNNGTLS 120

Query: 121 TATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 169
           T TVAASVAA+P GGR FW VHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 121 TTTVAASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Clc04G07730 vs. NCBI nr
Match: KAG6595366.1 (hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.7 bits (626), Expect = 2.8e-61
Identity = 127/168 (75.60%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MAALETAGADLEKEWQRAAAAATAERGSGFGEVKVKLERDCRICHLGLESNSSEFGVGIE 60
           MAALETAG DLE+  +       AE     GEVKV  ERDCRICHLGLESNSSE G  IE
Sbjct: 1   MAALETAGVDLEEGGRGGDGGRRAEA----GEVKVHSERDCRICHLGLESNSSECGTAIE 60

Query: 61  LGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVS 120
           LGC CKNDL AAHKHCAEAWFKIRGNKTCEICHSIV+NV V HE EQ EQ+H  NNGT+S
Sbjct: 61  LGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGV-HELEQMEQLHEFNNGTLS 120

Query: 121 TATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 169
           T TVAASVAA+P GGR FW VHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 121 TTTVAASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Clc04G07730 vs. NCBI nr
Match: XP_023517920.1 (uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 126/168 (75.00%), Postives = 133/168 (79.17%), Query Frame = 0


Query: 1   MAALETAGADLEKEWQRAAAAATAERGSGFGEVKVKLERDCRICHLGLESNSSEFGVGIE 60
           MAALETAG DLE+  +       AE     GEVKV  ERDCRICHLGLESNSSE G  IE
Sbjct: 1   MAALETAGVDLEEGGRGGHGGRRAEA----GEVKVHSERDCRICHLGLESNSSECGTAIE 60

Query: 61  LGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVS 120
           LGC CKNDL AAHKHCAEAWFKIRGNKTCEICHSIV+NV   HE EQ EQ+H  NNGT+S
Sbjct: 61  LGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLS 120

Query: 121 TATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 169
           T TVAASV AAP GGR FW VHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 121 TTTVAASV-AAPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Clc04G07730 vs. NCBI nr
Match: XP_022151515.1 (uncharacterized protein LOC111019441, partial [Momordica charantia])

HSP 1 Score: 232.3 bits (591), Expect = 3.2e-57
Identity = 118/169 (69.82%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 1   MAALETAG-ADLEKEWQRAAAAATAERGSGFGEVKVKLERDCRICHLGLESNSSEFGVGI 60
           +AA++T G ADLE+              SG    +   ERDCRICHLGLES+S E G+GI
Sbjct: 18  IAAVDTPGSADLEQ----------GRCSSGGERRREAAERDCRICHLGLESSSDECGIGI 77

Query: 61  ELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTV 120
           ELGC CKNDLGAAHKHCAEAWFKIRGNKTCEICHS+V NV+ AHE E  EQ+  SNN TV
Sbjct: 78  ELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATV 137

Query: 121 STATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 169
           ST TVA SV   P+GGRSFW VHRVLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 138 STTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 176

[Close]

BLAST of Clc04G07730 vs. ExPASy TrEMBL
Match: A0A6J1DBE4 (uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019441 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.5e-57
Identity = 118/169 (69.82%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 1   MAALETAG-ADLEKEWQRAAAAATAERGSGFGEVKVKLERDCRICHLGLESNSSEFGVGI 60
           +AA++T G ADLE+              SG    +   ERDCRICHLGLES+S E G+GI
Sbjct: 18  IAAVDTPGSADLEQ----------GRCSSGGERRREAAERDCRICHLGLESSSDECGIGI 77

Query: 61  ELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTV 120
           ELGC CKNDLGAAHKHCAEAWFKIRGNKTCEICHS+V NV+ AHE E  EQ+  SNN TV
Sbjct: 78  ELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATV 137

Query: 121 STATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 169
           ST TVA SV   P+GGRSFW VHRVLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 138 STTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 176

[Close]

BLAST of Clc04G07730 vs. ExPASy TrEMBL
Match: A0A6A3CP99 (Laccase-8-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002942pilonHSYRG00005 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.9e-50
Identity = 103/144 (71.53%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 28  SGFGEVKV---KLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIR 87
           SG  E+KV   K E++CRICHLGLESNS E GV IELGC CK+DL  AHKHCAEAWFKIR
Sbjct: 88  SGANEIKVHLAKAEKNCRICHLGLESNSHESGVAIELGCSCKDDLATAHKHCAEAWFKIR 147

Query: 88  GNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRV 147
           GNKTCEICHSI RNV++A+E E  EQ + +N+   STAT A S AA+ S  RSFWH HR 
Sbjct: 148 GNKTCEICHSIARNVILANEIELMEQPNETNS---STATAAVSGAASYSDSRSFWHSHRF 207

Query: 148 LNFLLACMVFAFVISWLFHFNVPS 169
           LNFLLACMVFAFVISWLFHF+VPS
Sbjct: 208 LNFLLACMVFAFVISWLFHFSVPS 228

[Close]

BLAST of Clc04G07730 vs. ExPASy TrEMBL
Match: A0A6J1CWG7 (uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015024 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.9e-50
Identity = 104/147 (70.75%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 25  ERGSGFGEVKV---KLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWF 84
           E  +G  E+KV   K+ERDCRICHLGLESNS E G+ IELGC CK+DL AAHKHCAE WF
Sbjct: 88  ENENGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWF 147

Query: 85  KIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHV 144
           KIRGNKTCEICHSI RN++  HE E TEQ   SNN + STA VAAS+ ++ S  +SFW  
Sbjct: 148 KIRGNKTCEICHSIARNILGPHEVELTEQSTESNNAS-STAAVAASIPSSDS--QSFWRG 207

Query: 145 HRVLNFLLACMVFAFVISWLFHFNVPS 169
           HR LNFLLACMVFAFVISWLFHFNVPS
Sbjct: 208 HRFLNFLLACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Clc04G07730 vs. ExPASy TrEMBL
Match: A0A0B0MSH9 (E3 ubiquitin-protein ligase MARCH2 OS=Gossypium arboreum OX=29729 GN=LOC108455880 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 9.0e-50
Identity = 103/144 (71.53%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 28  SGFGEVKV---KLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIR 87
           SG  E+K+   K+E+DCRICHLGLESNS E G  IELGC CK+DL AAHKHCAEAWFKIR
Sbjct: 84  SGANELKLHLAKVEKDCRICHLGLESNSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIR 143

Query: 88  GNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRV 147
           GNKTCEICHSI RNV+  +E E TEQ + +N+   STAT A S AA+ +  RSFWH HR 
Sbjct: 144 GNKTCEICHSIARNVVGVNEVESTEQPNETNS---STATTAVSGAASYTESRSFWHGHRF 203

Query: 148 LNFLLACMVFAFVISWLFHFNVPS 169
           LNFLLACMVFAFVISWLFHFNVPS
Sbjct: 204 LNFLLACMVFAFVISWLFHFNVPS 224

[Close]

BLAST of Clc04G07730 vs. ExPASy TrEMBL
Match: A0A2P5YEN9 (RING-CH-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G171900v1 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 9.0e-50
Identity = 103/144 (71.53%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 28  SGFGEVKV---KLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIR 87
           SG  E+K+   K+E+DCRICHLGLESNS E G  IELGC CK+DL AAHKHCAEAWFKIR
Sbjct: 84  SGANELKLHLAKVEKDCRICHLGLESNSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIR 143

Query: 88  GNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRV 147
           GNKTCEICHSI RNV+  +E E TEQ + +N+   STAT A S AA+ +  RSFWH HR 
Sbjct: 144 GNKTCEICHSIARNVVGVNEVESTEQPNETNS---STATTAVSGAASYTESRSFWHGHRF 203

Query: 148 LNFLLACMVFAFVISWLFHFNVPS 169
           LNFLLACMVFAFVISWLFHFNVPS
Sbjct: 204 LNFLLACMVFAFVISWLFHFNVPS 224

[Close]

BLAST of Clc04G07730 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-39
Identity = 81/131 (61.83%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 38  ERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVR 97
           ERDCRICH+ L++ + E GV IELGC CK DL AAHKHCAE WFKI+GNK CE+C SI  
Sbjct: 76  ERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAG 135

Query: 98  NVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFV 157
           NV+ + E E  E  + +N   V   T+  S       GRSFW  HR LNFLLACMVFAFV
Sbjct: 136 NVVGSVEVESEESRNEANG--VENLTLRTSGPRLVE-GRSFWQGHRFLNFLLACMVFAFV 195

Query: 158 ISWLFHFNVPS 169
           ISWLFHFNVPS
Sbjct: 196 ISWLFHFNVPS 203

[Close]

BLAST of Clc04G07730 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-33
Identity = 79/160 (49.38%), Postives = 95/160 (59.38%), Query Frame = 0


Query: 10  DLEKEWQRAAAAATAERGSGFGEVKVKLERDCRICHLGLESNSSEFGVGIELGCCCKNDL 69
           DL+ E    + A+ + RGS         E+DCRICHLGLES+  E G  + LGC CK+DL
Sbjct: 55  DLDDETDTESVASGSIRGSP--------EKDCRICHLGLESSRHECGDPMVLGCSCKDDL 114

Query: 70  GAAHKHCAEAWFKIRGNKTCEICHSIVRNVM-VAHEFEQTEQVHGSNNGTVSTATVAASV 129
           G  HK CA+ WFKI+GNKTCEIC SI +N   V +E  QT     +N   V        V
Sbjct: 115 GYVHKQCADTWFKIKGNKTCEICRSIAQNFFKVDNEIGQT--TVETNVDDVEAGNTPTMV 174

Query: 130 AAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 169
           A + S  R     +R LNFLL CMV AFVISW FHFN+PS
Sbjct: 175 ATSDSDDRRLCRGNRFLNFLLTCMVCAFVISWFFHFNLPS 204

[Close]

BLAST of Clc04G07730 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-30
Identity = 68/136 (50.00%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 38  ERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVR 97
           E+DCRICHLG+E++    G  IELGC CK+DL  AH+ CAE WFKI+G+KTCEIC S+ R
Sbjct: 81  EKDCRICHLGVETSG---GGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVAR 140

Query: 98  NVMVAHEF-EQTEQVHGSNNGTVSTATVAASVAAAPSGGRSF----WHVHRVLNFLLACM 157
           NV  A+E    T +     NG           AA   GG +     W   RV+N +LACM
Sbjct: 141 NVGGANEMVGSTMEERELRNG--------EETAAGEGGGATVVENRWQPQRVVNLVLACM 200

Query: 158 VFAFVISWLFHFNVPS 169
           VF F ISW+FHF+V S
Sbjct: 201 VFGFFISWIFHFHVSS 205

[Close]

BLAST of Clc04G07730 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 69/168 (41.07%), Postives = 82/168 (48.81%), Query Frame = 0


Query: 34  KVKLERDCRICHLGLESNSSE-------------------------------FGVGIELG 93
           K K  RDCRICHL LE+N                                  +G+ ++LG
Sbjct: 74  KKKGGRDCRICHLPLETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLG 133

Query: 94  CCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTA 153
           C CK DLG AH  CAE WFKI+GN TCEIC ++  NV             G  +   STA
Sbjct: 134 CSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNVA------------GEQSNPESTA 193

Query: 154 TVAASVAAAPS----GGRSFWHVHRVLNFLLACMVFAFVISWLFHFNV 167
           +  +  AA  S      R  WH   V+NFLLA MVFAFV+SWLFHF V
Sbjct: 194 STHSQAAAGQSLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229

[Close]

BLAST of Clc04G07730 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-16
Identity = 38/71 (53.52%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 38  ERDCRICHLGLESNSSEFGVG-------IELGCCCKNDLGAAHKHCAEAWFKIRGNKTCE 97
           ER CRICH G + +    G         IE+GC CKN+LG AH HCAEAWFK+RGN  CE
Sbjct: 99  ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158

Query: 98  ICHSIVRNVMV 102
           IC    +NV V
Sbjct: 159 ICGCTAKNVTV 169

The following BLAST results are available for this feature:

BLAST of Clc04G07730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883458.1	1.3e-74	87.06	uncharacterized protein LOC120074413 [Benincasa hispida]	[more]
KAG7027374.1	7.3e-62	75.60	hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6595366.1	2.8e-61	75.60	hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517920.1	1.8e-60	75.00	uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022151515.1	3.2e-57	69.82	uncharacterized protein LOC111019441, partial [Momordica charantia]	[more]

BLAST of Clc04G07730 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G07730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBE4	1.5e-57	69.82	uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6A3CP99	6.9e-50	71.53	Laccase-8-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002942pilonHSYRG0000...	[more]
A0A6J1CWG7	6.9e-50	70.75	uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A0B0MSH9	9.0e-50	71.53	E3 ubiquitin-protein ligase MARCH2 OS=Gossypium arboreum OX=29729 GN=LOC10845588...	[more]
A0A2P5YEN9	9.0e-50	71.53	RING-CH-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_...	[more]

BLAST of Clc04G07730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	1.4e-39	61.83	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	2.6e-33	49.38	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	2.7e-30	50.00	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	1.1e-26	41.07	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	2.2e-16	53.52	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 40..93 e-value: 1.7E-12 score: 57.5
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 41..92 e-value: 9.9E-8 score: 32.0
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 33..99 score: 17.110201
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 28..102 e-value: 1.3E-13 score: 52.2
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 27..168
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 27..168
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 41..93 e-value: 1.22111E-10 score: 52.3296
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 38..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G07730.2	Clc04G07730.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding