Clc04G07440 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G07440
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	30S ribosomal protein S31, chloroplastic
Location	ClcChr04: 21184000 .. 21184910 (+)
RNA-Seq Expression	Clc04G07440
Synteny	Clc04G07440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCAATCTTATATCCTGTCGGGGCTCCGAAAACCTGTCCGGGTCAACTATAAAAGCCAGATCATATCCGTCACATTCTCCACTCGATACTTATCTTCGTGATTCTCTCACCGGGGCCTGCTCTGCGTCTTCTTCATCCATCAATGGCCTCTCTTCCTTTCGGTCTTCTTCAGGCTGTATCTCAGTCTCCTACTCTTTCTCCTCGTTTTTTCTCTTTCTCCAAATTTGAGACCCTAGGAACATCTCTGCGTGCTTCTTCTACTTCTTCTCTTGCAGTCTCTACAACTTCATCTCCTTCTTCAATTCCTGCTGGTATGCGTTTGTTAGTTGAATTTATGTGTTTATGTCCCTTATGTTCACTTTCGATCGCGTAATTTCTGTTCTGTGTTTGCTTGTTAAGTGTATTGTGGCAGAGGTGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCATTCGTACGGAAATGTATGTGTCTCTATGTTCTCTGTTTGTTTTCTTTTTTGATTGTGAGTTTCTCTTTCGTTCTTTTATTTTGATTTTATTTTTCGGGTGGAAAATTGTTCAGGCAAGGCCTCGGGACAAGACGAAGGGGAGAGGAACTCCGAGAGTACCAGCTCCTCCTTCTCCACCTAGGAAGGATAAATTTGACGACGATGAGAAAATCAAGATTGAGATTGACGAGTCTCTTTTTCGCTAGCTAGTCATGGATCAGCCTAATTCTGTTTATTTGAATGTGTTTTCTTAATCCAGAAGGTACTTTCACTTCTTATAATAGCATTATTTTTGTATGAATTCTTCAGTCGCTCATTGGCTTCTTGAATCTGTTGTTCGTTTTTAGTCAACTCGAAATATGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

mRNA sequence

CGCCAATCTTATATCCTGTCGGGGCTCCGAAAACCTGTCCGGGTCAACTATAAAAGCCAGATCATATCCGTCACATTCTCCACTCGATACTTATCTTCGTGATTCTCTCACCGGGGCCTGCTCTGCGTCTTCTTCATCCATCAATGGCCTCTCTTCCTTTCGGTCTTCTTCAGGCTGTATCTCAGTCTCCTACTCTTTCTCCTCGTTTTTTCTCTTTCTCCAAATTTGAGACCCTAGGAACATCTCTGCGTGCTTCTTCTACTTCTTCTCTTGCAGTCTCTACAACTTCATCTCCTTCTTCAATTCCTGCTGTGTATTGTGGCAGAGGTGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCATTCGTACGGAAATGCAAGGCCTCGGGACAAGACGAAGGGGAGAGGAACTCCGAGAGTACCAGCTCCTCCTTCTCCACCTAGGAAGGATAAATTTGACGACGATGAGAAAATCAAGATTGAGATTGACGAGTCTCTTTTTCGCTAGCTAGTCATGGATCAGCCTAATTCTGTTTATTTGAATGTGTTTTCTTAATCCAGAAGGTACTTTCACTTCTTATAATAGCATTATTTTTGTATGAATTCTTCAGTCGCTCATTGGCTTCTTGAATCTGTTGTTCGTTTTTAGTCAACTCGAAATATGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

Coding sequence (CDS)

ATGGCCTCTCTTCCTTTCGGTCTTCTTCAGGCTGTATCTCAGTCTCCTACTCTTTCTCCTCGTTTTTTCTCTTTCTCCAAATTTGAGACCCTAGGAACATCTCTGCGTGCTTCTTCTACTTCTTCTCTTGCAGTCTCTACAACTTCATCTCCTTCTTCAATTCCTGCTGTGTATTGTGGCAGAGGTGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCATTCGTACGGAAATGCAAGGCCTCGGGACAAGACGAAGGGGAGAGGAACTCCGAGAGTACCAGCTCCTCCTTCTCCACCTAGGAAGGATAAATTTGACGACGATGAGAAAATCAAGATTGAGATTGACGAGTCTCTTTTTCGCTAG

Protein sequence

MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLFR

Homology

[Close]

BLAST of Clc04G07440 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           MASLPFGLLQA SQSPTLSPRFFSFSK ETLGTSLRASST+SLA STTSSPSSIPAVYCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRFN SYGNARPR+KTKGRGTPRVP PPSPPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

[Close]

BLAST of Clc04G07440 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSK ETLGTSLRASST+SLA+ST SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of Clc04G07440 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-50
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           MASLPFGLLQA SQSPTLSPRFFSFSK ETLGTSLRA ST+SLA S TSSPSS+PAVYCG
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 111

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVP PP+PPRKDKF+DDEKIKIEID+SLF
Sbjct: 112 RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLF 170

[Close]

BLAST of Clc04G07440 vs. NCBI nr
Match: XP_004147884.1 (30S ribosomal protein S31, chloroplastic [Cucumis sativus] >KGN54373.1 hypothetical protein Csa_018058 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 2.1e-47
Identity = 106/120 (88.33%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           MASLPFGLLQA SQ    SPRFFSFSK E LGTSLRASST+SLA+ST SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQAPSQ----SPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 116

[Close]

BLAST of Clc04G07440 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 3.1e-46
Identity = 104/120 (86.67%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           MASLPFGLLQA  QSPTLSPR FSFSK ETLGTSLR S+     +S TSSPSSIPAVYCG
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GISATSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRF HS+GNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 116

[Close]

BLAST of Clc04G07440 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-27
Identity = 75/120 (62.50%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           MASL  G    V+ +  L     S S  ET G SL +  T   ++ST+SS SSIP VYCG
Sbjct: 1   MASLILGAPPRVTVA--LPSSRLSSSHSETAGVSL-SCFTHQFSLSTSSS-SSIPLVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGD+KT KGKRFNHS+GNARPR+K+KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLF
Sbjct: 61  RGDRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLF 116

[Close]

BLAST of Clc04G07440 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-14
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETL-GTSLRASSTSSLAVSTTSSPSSIPAVYC 60
           MASL  G       S +     FSFS  +++ G SL +  T SL+ S ++SP ++P +YC
Sbjct: 1   MASLLLGTPSMACHSVS-----FSFSHSQSVAGVSLSSPPTLSLSSSVSTSP-ALPLIYC 60

Query: 61  GRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFD 107
           GRGD+KT KGKRFNHS+GNARP++K KGRG P+ P  P      K D
Sbjct: 61  GRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 101

[Close]

BLAST of Clc04G07440 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 56  AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGTPRVPAPPSPP 101
           AV CGRGDKKT++GKRF  SYGNARP R+K   R   RV  P S P
Sbjct: 29  AVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTP 74

[Close]

BLAST of Clc04G07440 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.6e-51
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSK ETLGTSLRASST+SLA+ST SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of Clc04G07440 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.6e-51
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSK ETLGTSLRASST+SLA+ST SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of Clc04G07440 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.2e-50
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           MASLPFGLLQA SQSPTLSPRFFSFSK ETLGTSLRA ST+SLA S TSSPSS+PAVYCG
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 111

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVP PP+PPRKDKF+DDEKIKIEID+SLF
Sbjct: 112 RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLF 170

[Close]

BLAST of Clc04G07440 vs. ExPASy TrEMBL
Match: A0A0A0KXY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308630 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.0e-47
Identity = 106/120 (88.33%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           MASLPFGLLQA SQ    SPRFFSFSK E LGTSLRASST+SLA+ST SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQAPSQ----SPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 116

[Close]

BLAST of Clc04G07440 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.3e-46
Identity = 104/120 (86.67%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           MASLPFGLLQA  QSPTLSPR FSFSK ETLGTSLR S+      S TSSPSSIPAVYCG
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRF HS+GNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 116

[Close]

BLAST of Clc04G07440 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-28
Identity = 75/120 (62.50%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKFETLGTSLRASSTSSLAVSTTSSPSSIPAVYCG 60
           MASL  G    V+ +  L     S S  ET G SL +  T   ++ST+SS SSIP VYCG
Sbjct: 1   MASLILGAPPRVTVA--LPSSRLSSSHSETAGVSL-SCFTHQFSLSTSSS-SSIPLVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGD+KT KGKRFNHS+GNARPR+K+KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLF
Sbjct: 61  RGDRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLF 116

The following BLAST results are available for this feature:

BLAST of Clc04G07440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882305.1	1.1e-51	93.33	30S ribosomal protein S31, chloroplastic [Benincasa hispida]	[more]
XP_008449316.1	1.6e-50	90.00	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1...	[more]
XP_022151467.1	4.6e-50	90.83	30S ribosomal protein S31, chloroplastic [Momordica charantia]	[more]
XP_004147884.1	2.1e-47	88.33	30S ribosomal protein S31, chloroplastic [Cucumis sativus] >KGN54373.1 hypotheti...	[more]
XP_023517799.1	3.1e-46	86.67	30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc04G07440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80439	3.3e-27	62.50	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]
P47910	5.5e-14	47.66	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
P47909	3.6e-05	63.04	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of Clc04G07440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TU27	7.6e-51	90.00	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BL51	7.6e-51	90.00	30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228...	[more]
A0A6J1DDL3	2.2e-50	90.83	30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0KXY4	1.0e-47	88.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308630 PE=3 SV=1	[more]
A0A6J1HRX4	3.3e-46	86.67	30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]

BLAST of Clc04G07440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38140.1	2.4e-28	62.50	plastid-specific ribosomal protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 60..84 e-value: 1.5E-10 score: 38.9
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 18..103 e-value: 1.1E-30 score: 105.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..89
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..120
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G07440.1	Clc04G07440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding