Clc04G06860 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G06860
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	IBR domain containing protein
Location	ClcChr04: 20398560 .. 20399069 (+)
RNA-Seq Expression	Clc04G06860
Synteny	Clc04G06860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTGTGAAACTTCCGATTATCCTCAAAAATCTCTTCAATTCAAGCACAATGACAAATTCTTCTCCAAGATTCTGTCCAGAGAAAGTTCTAGAGCCAATTACTCTTCCAGAATCTACTACGGCGGATTGTCCGGCGCTGTTCCCTTCGTTTGGGAGTCTCAGCCAGGTACGCCTATTCATCGATTTTCCGATGACCTAACTCCTCCTCTTACTCCTCCTCCTTCCTACTTTTCCGATTCCGTTAAAAAACCGCTCAAGAAACGATCCAAATCTCTCTCTCTTCTCCACATCTTCTTCAATTCCAAGAGGAAATTCGATCTGTTGACGCCGCCGTTTTCTAAATCCGCCTCACTGCCGTCTTCTGGATCGCCGTTCGACTCGGCTGCAGGCGCGAAGTCCACAGGGCGGCGTTCGGCGCGGCGGTTTCCGACTAGAATCTCGAATTCGAAGGAGGAAGTGGATGCGGCGGCTACTGGTTGGGTACTTTGTTTCGGAACCGGTAGATGA

mRNA sequence

ATGCTTTGTGAAACTTCCGATTATCCTCAAAAATCTCTTCAATTCAAGCACAATGACAAATTCTTCTCCAAGATTCTGTCCAGAGAAAGTTCTAGAGCCAATTACTCTTCCAGAATCTACTACGGCGGATTGTCCGGCGCTGTTCCCTTCGTTTGGGAGTCTCAGCCAGGTACGCCTATTCATCGATTTTCCGATGACCTAACTCCTCCTCTTACTCCTCCTCCTTCCTACTTTTCCGATTCCGTTAAAAAACCGCTCAAGAAACGATCCAAATCTCTCTCTCTTCTCCACATCTTCTTCAATTCCAAGAGGAAATTCGATCTGTTGACGCCGCCGTTTTCTAAATCCGCCTCACTGCCGTCTTCTGGATCGCCGTTCGACTCGGCTGCAGGCGCGAAGTCCACAGGGCGGCGTTCGGCGCGGCGGTTTCCGACTAGAATCTCGAATTCGAAGGAGGAAGTGGATGCGGCGGCTACTGGTTGGGTACTTTGTTTCGGAACCGGTAGATGA

Coding sequence (CDS)

ATGCTTTGTGAAACTTCCGATTATCCTCAAAAATCTCTTCAATTCAAGCACAATGACAAATTCTTCTCCAAGATTCTGTCCAGAGAAAGTTCTAGAGCCAATTACTCTTCCAGAATCTACTACGGCGGATTGTCCGGCGCTGTTCCCTTCGTTTGGGAGTCTCAGCCAGGTACGCCTATTCATCGATTTTCCGATGACCTAACTCCTCCTCTTACTCCTCCTCCTTCCTACTTTTCCGATTCCGTTAAAAAACCGCTCAAGAAACGATCCAAATCTCTCTCTCTTCTCCACATCTTCTTCAATTCCAAGAGGAAATTCGATCTGTTGACGCCGCCGTTTTCTAAATCCGCCTCACTGCCGTCTTCTGGATCGCCGTTCGACTCGGCTGCAGGCGCGAAGTCCACAGGGCGGCGTTCGGCGCGGCGGTTTCCGACTAGAATCTCGAATTCGAAGGAGGAAGTGGATGCGGCGGCTACTGGTTGGGTACTTTGTTTCGGAACCGGTAGATGA

Protein sequence

MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR

Homology

[Close]

BLAST of Clc04G06860 vs. NCBI nr
Match: XP_038882810.1 (uncharacterized protein LOC120073955 [Benincasa hispida])

HSP 1 Score: 298.1 bits (762), Expect = 4.7e-77
Identity = 152/169 (89.94%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPI 60
           MLCETSDYPQKSLQFK NDKFFSKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPI
Sbjct: 1   MLCETSDYPQKSLQFKQNDKFFSKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLTPPFSKSASLP 120
           HRFSDDLTP LTPPPSYFSDSVKKPLKKRSKSLSLLHI FNSKRK DLL+PPFSKSASLP
Sbjct: 61  HRFSDDLTPTLTPPPSYFSDSVKKPLKKRSKSLSLLHILFNSKRKIDLLSPPFSKSASLP 120

Query: 121 SSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR 170
           SSGS FDSA GAK TGRRS RRFPT IS SKEE DAAATG +LCFG  R
Sbjct: 121 SSGSEFDSAPGAKFTGRRSGRRFPTGISRSKEEEDAAATGSILCFGISR 169

[Close]

BLAST of Clc04G06860 vs. NCBI nr
Match: XP_008464261.1 (PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73
Identity = 150/170 (88.24%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1   MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPI 60
           M+CETSDYPQKSLQFK NDKFFSKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPI
Sbjct: 1   MVCETSDYPQKSLQFKQNDKFFSKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLT-PPFSKSASL 120
           HRFSDDLTPPLTPPPSYFSDS+KKPLKKRSKSLSLLHIFFNSKRKFDLL+ PP SKSASL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFNSKRKFDLLSPPPVSKSASL 120

Query: 121 PSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR 170
           PS GS FDSAAGAK TGRRSARRFPT     KEE +AAA+G VLCFG GR
Sbjct: 121 PSPGSVFDSAAGAKFTGRRSARRFPT----EKEEENAAASGSVLCFGLGR 166

[Close]

BLAST of Clc04G06860 vs. NCBI nr
Match: XP_011653717.1 (uncharacterized protein LOC105435254 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 8.6e-71
Identity = 146/170 (85.88%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPI 60
           M+CETS+YPQKSLQFK NDKF SKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPI
Sbjct: 1   MVCETSEYPQKSLQFKQNDKFISKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLT-PPFSKSASL 120
           HRFSDDLTPPLTPPPSYFSDS+KKPLKKRSKSLSLLHIFF+SKRKFDLL+ PP SKS SL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFSSKRKFDLLSPPPVSKSPSL 120

Query: 121 PSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR 170
            SSGS FDSAAGAK TGRRSARRFPT     KEE +AAAT  VLCFG GR
Sbjct: 121 SSSGSVFDSAAGAKFTGRRSARRFPT----EKEEENAAATSSVLCFGIGR 166

[Close]

BLAST of Clc04G06860 vs. NCBI nr
Match: KAG6603545.1 (hypothetical protein SDJN03_04154, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033731.1 hypothetical protein SDJN02_03456, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 140/169 (82.84%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPI 60
           MLCETSDYP KSLQFKHNDKFFSK+L+RESSRAN+SSRIYYGGL+GAVPFVWESQPGTP+
Sbjct: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60

Query: 61  HRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLTPPFSKSASLP 120
           HRFSDDLTPPLTPPPSYFS S++KP K RSKSLSL HIFFN KRK DLLTPP SKSASLP
Sbjct: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASLP 120

Query: 121 SSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR 170
           SSGS FDSA GAK  GRRSARRF   +S SKE  DAAA+G VLCFG GR
Sbjct: 121 SSGSMFDSAVGAKFAGRRSARRFVPGVSRSKEGEDAAASGSVLCFGIGR 169

[Close]

BLAST of Clc04G06860 vs. NCBI nr
Match: XP_022925049.1 (uncharacterized protein LOC111432413 [Cucurbita moschata])

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-62
Identity = 134/171 (78.36%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPI 60
           MLCETSD   +SLQ KHNDKFFSK+L+RESSRA+YSSR+YY GL+GAVPF WESQPGTPI
Sbjct: 1   MLCETSDNLHQSLQIKHNDKFFSKLLTRESSRADYSSRVYYAGLAGAVPFGWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKF-DLLTPPFSKSASL 120
           HRFSDDLTPPLTPPPSYFSDS+KKP KKRSKSLSL HIFFN KRK  DLL+PPFSKSASL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPPKKRSKSLSLFHIFFNPKRKIDDLLSPPFSKSASL 120

Query: 121 PSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAA-TGWVLCFGTGR 170
           PSSGS FDSAA     GRR  RR P+ IS+SKE+  AAA TG VLCFG GR
Sbjct: 121 PSSGSMFDSAA-----GRRFPRRLPSGISHSKEKAAAAAPTGSVLCFGIGR 166

[Close]

BLAST of Clc04G06860 vs. ExPASy TrEMBL
Match: A0A1S3CL26 (uncharacterized protein LOC103502186 OS=Cucumis melo OX=3656 GN=LOC103502186 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.3e-74
Identity = 150/170 (88.24%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1   MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPI 60
           M+CETSDYPQKSLQFK NDKFFSKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPI
Sbjct: 1   MVCETSDYPQKSLQFKQNDKFFSKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLT-PPFSKSASL 120
           HRFSDDLTPPLTPPPSYFSDS+KKPLKKRSKSLSLLHIFFNSKRKFDLL+ PP SKSASL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFNSKRKFDLLSPPPVSKSASL 120

Query: 121 PSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR 170
           PS GS FDSAAGAK TGRRSARRFPT     KEE +AAA+G VLCFG GR
Sbjct: 121 PSPGSVFDSAAGAKFTGRRSARRFPT----EKEEENAAASGSVLCFGLGR 166

[Close]

BLAST of Clc04G06860 vs. ExPASy TrEMBL
Match: A0A0A0L1H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329820 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.2e-71
Identity = 146/170 (85.88%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPI 60
           M+CETS+YPQKSLQFK NDKF SKILSRESSRANYSSRIYYGGL+GAVPFVWESQPGTPI
Sbjct: 1   MVCETSEYPQKSLQFKQNDKFISKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLT-PPFSKSASL 120
           HRFSDDLTPPLTPPPSYFSDS+KKPLKKRSKSLSLLHIFF+SKRKFDLL+ PP SKS SL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFSSKRKFDLLSPPPVSKSPSL 120

Query: 121 PSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAATGWVLCFGTGR 170
            SSGS FDSAAGAK TGRRSARRFPT     KEE +AAAT  VLCFG GR
Sbjct: 121 SSSGSVFDSAAGAKFTGRRSARRFPT----EKEEENAAATSSVLCFGIGR 166

[Close]

BLAST of Clc04G06860 vs. ExPASy TrEMBL
Match: A0A6J1EB06 (uncharacterized protein LOC111432413 OS=Cucurbita moschata OX=3662 GN=LOC111432413 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.1e-63
Identity = 134/171 (78.36%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPI 60
           MLCETSD   +SLQ KHNDKFFSK+L+RESSRA+YSSR+YY GL+GAVPF WESQPGTPI
Sbjct: 1   MLCETSDNLHQSLQIKHNDKFFSKLLTRESSRADYSSRVYYAGLAGAVPFGWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKF-DLLTPPFSKSASL 120
           HRFSDDLTPPLTPPPSYFSDS+KKP KKRSKSLSL HIFFN KRK  DLL+PPFSKSASL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPPKKRSKSLSLFHIFFNPKRKIDDLLSPPFSKSASL 120

Query: 121 PSSGSPFDSAAGAKSTGRRSARRFPTRISNSKEEVDAAA-TGWVLCFGTGR 170
           PSSGS FDSAA     GRR  RR P+ IS+SKE+  AAA TG VLCFG GR
Sbjct: 121 PSSGSMFDSAA-----GRRFPRRLPSGISHSKEKAAAAAPTGSVLCFGIGR 166

[Close]

BLAST of Clc04G06860 vs. ExPASy TrEMBL
Match: A0A6J1IKR7 (uncharacterized protein LOC111478334 OS=Cucurbita maxima OX=3661 GN=LOC111478334 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 9.0e-58
Identity = 117/140 (83.57%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   MLCETSDYPQKSLQFKHNDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPI 60
           MLCETSDYP KSLQFKHNDKFFSK+L+RESSRAN+SSRIYYGGL+GAVPFVWESQPGTP+
Sbjct: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60

Query: 61  HRFSDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLTPPFSKSASLP 120
           HRFSDDLTPPLTPPPSYFS S++KP K RSKSLSL HIFFN KRK DLLTPP SKSASLP
Sbjct: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASLP 120

Query: 121 SSGSPFDSAAGAKSTGRRSA 141
           SSGS FDSA GA    R  A
Sbjct: 121 SSGSTFDSAVGAAVCARSLA 140

[Close]

BLAST of Clc04G06860 vs. ExPASy TrEMBL
Match: A0A6J1CSP7 (uncharacterized protein LOC111013865 OS=Momordica charantia OX=3673 GN=LOC111013865 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.0e-48
Identity = 104/133 (78.20%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 5   TSDYPQKSLQFKHNDKFFSKILSRESSRANYSSR-IYYGGLSGAVPFVWESQPGTPIHRF 64
           +SDYPQKSLQ K NDKFFSK+LSRESSRAN SSR +YYGG +GAVPF WESQPGTP HRF
Sbjct: 2   SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFDWESQPGTPKHRF 61

Query: 65  SDDLTPPLTPPPSYFSDSVKKPLKKRSKSLSLLHIFFNSKRKFDLLTPPFSKSASLPSSG 124
           SD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFFN KRKFDLL PPFS+SA+LPSSG
Sbjct: 62  SDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSSG 121

Query: 125 SPFDSAAGAKSTG 137
           S  DS A  K  G
Sbjct: 122 SAIDSPARVKFAG 134

[Close]

BLAST of Clc04G06860 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-14
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 0


Query: 18  NDKFFSKILSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHR-FSDDL-TPPLTPPP 77
           N    SKI+ +ESS+ N SSRIYY G   +VPF+WE++PGTP H  FS+ L  PPLTPPP
Sbjct: 10  NGVISSKIIVKESSQVNSSSRIYYYG-GASVPFLWETRPGTPKHALFSESLRLPPLTPPP 69

Query: 78  SYFSDSVKKPLKKRSKSLSLLHI-FFNSKRKFDLLTPPFSKSASLPSSGSPFDSAAGAKS 137
           SY+S S      K SK+ ++    F  +     +  P FS S++  SS S + S++    
Sbjct: 70  SYYSSSSSSG-NKLSKARTIKQTRFVKTLLSRHVSRPSFSWSSASSSSSSSYSSSSPPSK 129

Query: 138 TGRRSARRFPTRIS----NSKEEVDAAATGWVLCFGTG 169
              R  + +    S    + +EE+ +++    LC+  G
Sbjct: 130 VEHRPRKCYSCSRSYVKEDDEEEIVSSSPTSTLCYKRG 165

[Close]

BLAST of Clc04G06860 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). )

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-09
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 0


Query: 40  YYGGLSGAVPFVWESQPGTP-IHRFSDDLTP-PLTPPPSYFSDSVKKPLKKRSKSLSLLH 99
           YYGG S  +PF+WES+PGTP  H  SD   P PLTPPPSY+S  +    + +SK  S L 
Sbjct: 18  YYGGAS--IPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGILSTPRTQSKVRSKLS 77

Query: 100 IFFNSKRKFDL--------LTPPFSKSASLPSSGSPFDSAAGAKSTGRRS-ARRFPTRIS 159
            F +     DL         T   S S S  SS S F S+       R S  ++ P   +
Sbjct: 78  KFLSFSMFSDLRRSNHGSKKTASSSFSWSSTSSSSSFSSSPPHSLKKRMSHDKKSPLLYA 137

Query: 160 NSKE-EVDAAATGWVLCFGTGR 170
           N +E E+ ++ T  + C   GR
Sbjct: 138 NYEEDELRSSPTSTLCCSNGGR 157

[Close]

BLAST of Clc04G06860 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-09
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 40  YYGGLSGAVPFVWESQPGTPIHRFSDDLT-PPLTPPPSYFS---DSVKKPLKKRSKSLSL 99
           YY G +GAVPF WES PGTP H  S+  T PPLTPPPS+FS   D +++  KK +K +  
Sbjct: 67  YYDGAAGAVPFEWESHPGTPKHPSSELPTLPPLTPPPSHFSFSGDQIRRRSKKSTKKILA 126

Query: 100 L---HIFF-----NSKRKFDLLTPPFSKSASLPSSGSPFDSAAGAKSTGRRSARRFPTRI 159
           L    +F+     N K K    + P S S  +    + +D       T R   RRF +  
Sbjct: 127 LIPTRLFWLSGDHNGKAKKLSASSPPSLSERVLIDENEYD--LFKFQTERNVMRRFSSFD 186

Query: 160 SNSKEEVDAAATGWVLCFGTGR 170
           S++   +  + +    CFG  R
Sbjct: 187 SSADYPIQRSQS--TSCFGIRR 204

[Close]

BLAST of Clc04G06860 vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 9.3e-07
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 26 LSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKP 85
          +SR SS   Y  R+  G     VPF WE QPGTPI+    ++ PPL+PPP+  S  + KP
Sbjct: 12 ISRNSSVGYYDERMPEG-----VPFEWEMQPGTPINTQPREVVPPLSPPPAMLSLGLPKP 66

[Close]

BLAST of Clc04G06860 vs. TAIR 10
Match: AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B )

HSP 1 Score: 51.2 bits (121), Expect = 9.3e-07
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 26 LSRESSRANYSSRIYYGGLSGAVPFVWESQPGTPIHRFSDDLTPPLTPPPSYFSDSVKKP 85
          +SR SS   Y  R+  G     VPF WE QPGTPI+    ++ PPL+PPP+  S  + KP
Sbjct: 12 ISRNSSVGYYDERMPEG-----VPFEWEMQPGTPINTQPREVVPPLSPPPAMLSLGLPKP 66

The following BLAST results are available for this feature:

BLAST of Clc04G06860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882810.1	4.7e-77	89.94	uncharacterized protein LOC120073955 [Benincasa hispida]	[more]
XP_008464261.1	1.1e-73	88.24	PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo]	[more]
XP_011653717.1	8.6e-71	85.88	uncharacterized protein LOC105435254 [Cucumis sativus]	[more]
KAG6603545.1	1.1e-70	82.84	hypothetical protein SDJN03_04154, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022925049.1	1.5e-62	78.36	uncharacterized protein LOC111432413 [Cucurbita moschata]	[more]

BLAST of Clc04G06860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G06860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CL26	5.3e-74	88.24	uncharacterized protein LOC103502186 OS=Cucumis melo OX=3656 GN=LOC103502186 PE=...	[more]
A0A0A0L1H9	4.2e-71	85.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329820 PE=4 SV=1	[more]
A0A6J1EB06	7.1e-63	78.36	uncharacterized protein LOC111432413 OS=Cucurbita moschata OX=3662 GN=LOC1114324...	[more]
A0A6J1IKR7	9.0e-58	83.57	uncharacterized protein LOC111478334 OS=Cucurbita maxima OX=3661 GN=LOC111478334...	[more]
A0A6J1CSP7	1.0e-48	78.20	uncharacterized protein LOC111013865 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Clc04G06860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40475.1	4.6e-14	36.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G56260.2	4.5e-09	37.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G01790.1	7.6e-09	35.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G25845.1	9.3e-07	45.00	BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela...	[more]
AT4G25850.2	9.3e-07	45.00	OSBP(oxysterol binding protein)-related protein 4B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..150
None	No IPR available	PANTHER	PTHR33257	OS05G0165500 PROTEIN	coord: 6..166
None	No IPR available	PANTHER	PTHR33257:SF24	EXPRESSED PROTEIN	coord: 6..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G06860.2	Clc04G06860.2	mRNA