Clc04G06070 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G06070
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	10 kDa chaperonin-like
Location	ClcChr04: 19000115 .. 19001538 (+)
RNA-Seq Expression	Clc04G06070
Synteny	Clc04G06070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGCGTTTGGTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTGCCTCCTGCCAAAACCAATTCCGGCATTCTGCTTCCTGAGAAGTCCAGTAAGGTGAATCTTCCTTTCCTCTCTCCCCCATTTCGATTCCCAAAATGTTAATTCGGTTGTTTGTGTATGGGAATTCGTGGGAGAATCGGCTTTCTCTTGCAATTTGCTTTTGTTTTCGTTGTTTCTTTACCGAGATTCTGGAAATTTGCGGCACTTAATTCTCTCGGACGTCTAGAGTCATTTTCGTTGATGGGTATTCTTATGGAGTCATTTCCGTTTATGGGGGGTTTTTTTTTTCCCCTCTTTAGCCTTTTCTTATTTAATAGTTATTTGGTTTATGGTTTGTTGTGAAGTCGGCTTCTAGTTGGGTCTGTGAGCTCATTTAGTGGTTATTTAATTAATTTCAATATTAGCCTATTCAAAGAAGACTTGTAATAGAAGTTGAAAGTGTGAATGTTTTCATTTCCTCCTGATTTCAATGTTAGTGACTGAACGATTTATAACAAAATCTTTTTTCAAAGAGTGCGTTGTTAAATAATTCAAGACCGAATGCTTAACATAGATGTGGATGTAGCTGCTGAACTGTGTGAGTGGGATTGACCATGCAATTTTTTTTTTTTTCATTTTCAGCAGAAATCTAAGTTAGTTTAGAAGTATTTTTCGTGGATGAGCTTTGAATAGCTTTGATTTAGAGTACTTCCTTCCATCAGGATTTTTTAGATTCAGAATGATATGACTGTTTTGTTCATGATAAGTTTAAAGAGTCCATGGATTCTGGCTTGTGTTTTATTTAATCTTAACTCTCTGCATTTGAAGGACTAAATTTGCAATACCTTTCGTCCCAAACTAGTATGTCAGATTCTTATGACTTTCTCATGTTTTTCTTTGGGGTTGGATTTTAAAGATCTTTTGTAATTATTCAATAGGTTAGGTTCTGTAATGGAGAATTGGATCTTTTTTCTCTAGTTGGGCTCCCTTTTGTGGTCTTGATTTTTTTTCTTTTTTCTTTTTTATTATTATTTTTTTTTGTATTATTGTATTCTTTCATTTCTTTTCTCAATGAAAATTGTTATAAAAAAAAGTTGTTGTGACGTTCGGCTTTGTTACACAAAATTTATGGATCGTTTATCGAGTGCCTCTTCCACTGACTTTTGTTTCTCATGTAGCTTAACTCTGGAAAAGTTATCTCTGTTGGTCCTGGGGCTCGTGATAGAGAGGGAAAGATTATTCCTGTCACTGTAAAAGAAGGTGACACCGTCCTCCTACCAGAATATGGAGGCACTGAAGTCAAGCTTGGAGAAAAACAGTATGTATACTTGTTCTCTTACTTTTGTTATTTATTTAAGTTTTGGTCTGTTATTTGCTCAAGAATTTGGTTTTAA

mRNA sequence

ATGGCGAAGCGTTTGGTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTGCCTCCTGCCAAAACCAATTCCGGCATTCTGCTTCCTGAGAAGTCCAGTAAGCTTAACTCTGGAAAAGTTATCTCTGTTGGTCCTGGGGCTCGTGATAGAGAGGGAAAGATTATTCCTGTCACTGTAAAAGAAGGTGACACCGTCCTCCTACCAGAATATGGAGGCACTGAAGTCAAGCTTGGAGAAAAACAGTATGTATACTTGTTCTCTTACTTTTGTTATTTATTTAAGTTTTGGTCTGTTATTTGCTCAAGAATTTGGTTTTAA

Coding sequence (CDS)

ATGGCGAAGCGTTTGGTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTGCCTCCTGCCAAAACCAATTCCGGCATTCTGCTTCCTGAGAAGTCCAGTAAGCTTAACTCTGGAAAAGTTATCTCTGTTGGTCCTGGGGCTCGTGATAGAGAGGGAAAGATTATTCCTGTCACTGTAAAAGAAGGTGACACCGTCCTCCTACCAGAATATGGAGGCACTGAAGTCAAGCTTGGAGAAAAACAGTATGTATACTTGTTCTCTTACTTTTGTTATTTATTTAAGTTTTGGTCTGTTATTTGCTCAAGAATTTGGTTTTAA

Protein sequence

MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTVKEGDTVLLPEYGGTEVKLGEKQYVYLFSYFCYLFKFWSVICSRIWF

Homology

[Close]

BLAST of Clc04G06070 vs. NCBI nr
Match: XP_038881343.1 (10 kDa chaperonin, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 161.8 bits (408), Expect = 3.3e-36
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVIS+GPGARDREGKIIPVTV
Sbjct: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISIGPGARDREGKIIPVTV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEGDTVLLPEYGGTEVKLGEKQ+ YLF
Sbjct: 61 KEGDTVLLPEYGGTEVKLGEKQF-YLF 86

[Close]

BLAST of Clc04G06070 vs. NCBI nr
Match: XP_022154455.1 (10 kDa chaperonin, mitochondrial-like [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-34
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRLVPLLNRVLIEKIVPPAKTN+GILLPEKSSKLNSGKV+SVGPG RDREG +IPVTV
Sbjct: 1  MAKRLVPLLNRVLIEKIVPPAKTNTGILLPEKSSKLNSGKVLSVGPGTRDREGNLIPVTV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEGDTVLLPEYGGTEVKLG+KQ +YLF
Sbjct: 61 KEGDTVLLPEYGGTEVKLGDKQ-LYLF 86

[Close]

BLAST of Clc04G06070 vs. NCBI nr
Match: XP_022966634.1 (10 kDa chaperonin, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 9.0e-34
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPG RDR+G IIPV V
Sbjct: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGTRDRDGNIIPVIV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEG+TVLLPEYGGTEVKLGEKQ+ YLF
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKQF-YLF 86

[Close]

BLAST of Clc04G06070 vs. NCBI nr
Match: XP_022931931.1 (10 kDa chaperonin, mitochondrial-like [Cucurbita moschata] >XP_023517291.1 10 kDa chaperonin, mitochondrial-like [Cucurbita pepo subsp. pepo] >KAG6595428.1 10 kDa chaperonin, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027431.1 10 kDa chaperonin, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPG RDR+G IIPV V
Sbjct: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGTRDRDGNIIPVVV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEG+TVLLPEYGGTEVKLGEKQ+ YL+
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKQF-YLY 86

[Close]

BLAST of Clc04G06070 vs. NCBI nr
Match: XP_008455733.1 (PREDICTED: 10 kDa chaperonin-like [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-33
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKSSKLNSGKVI+VGPGARDREGKIIP++V
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEGD VLLPEYGG EVKLGEKQ+ YLF
Sbjct: 61 KEGDIVLLPEYGGNEVKLGEKQF-YLF 86

[Close]

BLAST of Clc04G06070 vs. ExPASy Swiss-Prot
Match: P34893 (10 kDa chaperonin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN10 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-31
Identity = 62/83 (74.70%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          M KRL+P  NR+L+++++ PAKT SGILLPEKSSKLNSGKVI+VGPG+RD++GK+IPV+V
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEGDTVLLPEYGGT+VKLGE +Y
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEY 83

[Close]

BLAST of Clc04G06070 vs. ExPASy Swiss-Prot
Match: Q96539 (10 kDa chaperonin OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-31
Identity = 62/83 (74.70%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          M KRL+P  NR+L++ ++ PAKT SGILLPEK+SKLNSGKVI+VGPG+RD++GK+IPV+V
Sbjct: 1  MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEGDTVLLPEYGGT+VKLGEK+Y
Sbjct: 61 KEGDTVLLPEYGGTQVKLGEKEY 83

[Close]

BLAST of Clc04G06070 vs. ExPASy Swiss-Prot
Match: O59804 (10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hsp10 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 2  AKRLVPLLNRVLIEKIVPPAKTNSGILLPEKS-SKLNSGKVISVGPGARDREGKIIPVTV 61
          AK +VPLL+R+L+++I    KT SGI LPEKS  KL+ G+VISVG G  ++EGK+   +V
Sbjct: 8  AKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPSV 67

Query: 62 KEGDTVLLPEYGGTEVKLGEKQY 84
            GD VLLP YGG+ +K+GE++Y
Sbjct: 68 AVGDRVLLPAYGGSNIKVGEEEY 90

[Close]

BLAST of Clc04G06070 vs. ExPASy Swiss-Prot
Match: P38910 (10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HSP10 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-15
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 2  AKRLVPLLNRVLIEKIVPPAKTNSGILLPEKS-SKLNSGKVISVGPGARDREGKIIPVTV 61
          AK +VPL++RVL+++I   AKT SG+ LPEK+  KLN  +V++VGPG  D  G  +   V
Sbjct: 8  AKSIVPLMDRVLVQRIKAQAKTASGLYLPEKNVEKLNQAEVVAVGPGFTDANGNKVVPQV 67

Query: 62 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          K GD VL+P++GG+ +KLG    V LF
Sbjct: 68 KVGDQVLIPQFGGSTIKLGNDDEVILF 94

[Close]

BLAST of Clc04G06070 vs. ExPASy Swiss-Prot
Match: Q9W6X3 (10 kDa heat shock protein, mitochondrial OS=Oryzias latipes OX=8090 GN=hspe1 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-14
Identity = 39/86 (45.35%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 3  KRLVPLLNRVLIEKIVPPAKTNSGILLPEKS-SKLNSGKVISVGPGARDREGKIIPVTVK 62
          ++ +PL +RVL+E+++    T  GI+LPEKS  K+    V++VGPG+ +++G++ P++VK
Sbjct: 4  RKFLPLFDRVLVERLMAETVTKGGIMLPEKSQGKVLQATVVAVGPGSMNQKGEVQPMSVK 63

Query: 63 EGDTVLLPEYGGTEVKLGEKQYVYLF 88
           G+ VLLP+YGGT+V L +K Y +LF
Sbjct: 64 VGEKVLLPQYGGTKVVLEDKDY-FLF 88

[Close]

BLAST of Clc04G06070 vs. ExPASy TrEMBL
Match: A0A6J1DJN1 (10 kDa chaperonin, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111021728 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRLVPLLNRVLIEKIVPPAKTN+GILLPEKSSKLNSGKV+SVGPG RDREG +IPVTV
Sbjct: 1  MAKRLVPLLNRVLIEKIVPPAKTNTGILLPEKSSKLNSGKVLSVGPGTRDREGNLIPVTV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEGDTVLLPEYGGTEVKLG+KQ +YLF
Sbjct: 61 KEGDTVLLPEYGGTEVKLGDKQ-LYLF 86

[Close]

BLAST of Clc04G06070 vs. ExPASy TrEMBL
Match: A0A6J1HUD0 (10 kDa chaperonin, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111466260 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPG RDR+G IIPV V
Sbjct: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGTRDRDGNIIPVIV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEG+TVLLPEYGGTEVKLGEKQ+ YLF
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKQF-YLF 86

[Close]

BLAST of Clc04G06070 vs. ExPASy TrEMBL
Match: A0A6J1EUZ7 (10 kDa chaperonin, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111438208 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.4e-34
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPG RDR+G IIPV V
Sbjct: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGTRDRDGNIIPVVV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEG+TVLLPEYGGTEVKLGEKQ+ YL+
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKQF-YLY 86

[Close]

BLAST of Clc04G06070 vs. ExPASy TrEMBL
Match: A0A1S3C2U3 (10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC103495836 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKSSKLNSGKVI+VGPGARDREGKIIP++V
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEGD VLLPEYGG EVKLGEKQ+ YLF
Sbjct: 61 KEGDIVLLPEYGGNEVKLGEKQF-YLF 86

[Close]

BLAST of Clc04G06070 vs. ExPASy TrEMBL
Match: A0A0A0KYT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G426760 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.8e-33
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKS+KLNSGKVI+VGPGARDREGKIIP++V
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEGD VLLPEYGG EVKLGEKQ+ YLF
Sbjct: 61 KEGDMVLLPEYGGNEVKLGEKQF-YLF 86

[Close]

BLAST of Clc04G06070 vs. TAIR 10
Match: AT1G14980.1 (chaperonin 10 )

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-32
Identity = 62/83 (74.70%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          M KRL+P  NR+L+++++ PAKT SGILLPEKSSKLNSGKVI+VGPG+RD++GK+IPV+V
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEGDTVLLPEYGGT+VKLGE +Y
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEY 83

[Close]

BLAST of Clc04G06070 vs. TAIR 10
Match: AT1G23100.1 (GroES-like family protein )

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-32
Identity = 65/84 (77.38%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+P LNRVL+EKI+PP+KT SGILLPEKSS+LNSG+VI+VGPGARDR G +IPV+V
Sbjct: 1  MAKRLIPTLNRVLVEKILPPSKTVSGILLPEKSSQLNSGRVIAVGPGARDRAGNLIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYV 85
          KEGD VLLPE+GGT+VKLGEK+++
Sbjct: 61 KEGDNVLLPEFGGTQVKLGEKEFL 84

[Close]

BLAST of Clc04G06070 vs. TAIR 10
Match: AT5G20720.1 (chaperonin 20 )

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-09
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 3   KRLVPLLNRVLIEKIVPPAKTNSGILLPEKS-SKLNSGKVISVGPGARDREGKIIPVTVK 62
           K L PL +RV I+      KT  G+LL E +  K + G VI+VGPG+ D EGKI P+ V 
Sbjct: 158 KDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVS 217

Query: 63  EGDTVLLPEYGGTEVK 78
            G TVL  +Y G + K
Sbjct: 218 TGSTVLYSKYAGNDFK 233

[Close]

BLAST of Clc04G06070 vs. TAIR 10
Match: AT5G20720.2 (chaperonin 20 )

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-09
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 3   KRLVPLLNRVLIEKIVPPAKTNSGILLPEKS-SKLNSGKVISVGPGARDREGKIIPVTVK 62
           K L PL +RV I+      KT  G+LL E +  K + G VI+VGPG+ D EGKI P+ V 
Sbjct: 158 KDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVS 217

Query: 63  EGDTVLLPEYGGTEVK 78
            G TVL  +Y G + K
Sbjct: 218 TGSTVLYSKYAGNDFK 233

[Close]

BLAST of Clc04G06070 vs. TAIR 10
Match: AT5G20720.3 (chaperonin 20 )

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-09
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 3   KRLVPLLNRVLIEKIVPPAKTNSGILLPEKS-SKLNSGKVISVGPGARDREGKIIPVTVK 62
           K L PL +RV I+      KT  G+LL E +  K + G VI+VGPG+ D EGKI P+ V 
Sbjct: 158 KDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVS 217

Query: 63  EGDTVLLPEYGGTEVK 78
            G TVL  +Y G + K
Sbjct: 218 TGSTVLYSKYAGNDFK 233

The following BLAST results are available for this feature:

BLAST of Clc04G06070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881343.1	3.3e-36	96.55	10 kDa chaperonin, mitochondrial-like [Benincasa hispida]	[more]
XP_022154455.1	5.3e-34	90.80	10 kDa chaperonin, mitochondrial-like [Momordica charantia]	[more]
XP_022966634.1	9.0e-34	91.95	10 kDa chaperonin, mitochondrial-like [Cucurbita maxima]	[more]
XP_022931931.1	1.5e-33	90.80	10 kDa chaperonin, mitochondrial-like [Cucurbita moschata] >XP_023517291.1 10 kD...	[more]
XP_008455733.1	2.6e-33	89.66	PREDICTED: 10 kDa chaperonin-like [Cucumis melo]	[more]

BLAST of Clc04G06070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P34893	1.5e-31	74.70	10 kDa chaperonin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN10 PE=1 S...	[more]
Q96539	2.5e-31	74.70	10 kDa chaperonin OS=Brassica napus OX=3708 PE=3 SV=1	[more]
O59804	1.6e-17	54.22	10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
P38910	1.5e-15	49.43	10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q9W6X3	2.8e-14	45.35	10 kDa heat shock protein, mitochondrial OS=Oryzias latipes OX=8090 GN=hspe1 PE=...	[more]

BLAST of Clc04G06070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJN1	2.6e-34	90.80	10 kDa chaperonin, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1HUD0	4.4e-34	91.95	10 kDa chaperonin, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC11146626...	[more]
A0A6J1EUZ7	7.4e-34	90.80	10 kDa chaperonin, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111438...	[more]
A0A1S3C2U3	1.3e-33	89.66	10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC103495836 PE=3 SV=1	[more]
A0A0A0KYT6	2.8e-33	88.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G426760 PE=3 SV=1	[more]

BLAST of Clc04G06070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14980.1	1.1e-32	74.70	chaperonin 10	[more]
AT1G23100.1	1.1e-32	77.38	GroES-like family protein	[more]
AT5G20720.1	2.8e-09	46.05	chaperonin 20	[more]
AT5G20720.2	2.8e-09	46.05	chaperonin 20	[more]
AT5G20720.3	2.8e-09	46.05	chaperonin 20	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020818	GroES chaperonin family	PRINTS	PR00297	CHAPERONIN10	coord: 26..47 score: 35.27 coord: 61..73 score: 52.0 coord: 5..20 score: 31.51
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 4..85 e-value: 1.6E-20 score: 84.1
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 5..86 e-value: 1.4E-22 score: 79.6
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 1..85
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 4..84 e-value: 5.41238E-31 score: 103.356
IPR037124	GroES chaperonin superfamily	GENE3D	2.30.33.40	GroES chaperonin	coord: 1..88 e-value: 3.1E-27 score: 96.6
None	No IPR available	PANTHER	PTHR10772:SF37	GROES-LIKE FAMILY PROTEIN	coord: 1..85
IPR018369	Chaperonin GroES, conserved site	PROSITE	PS00681	CHAPERONINS_CPN10	coord: 5..29
IPR011032	GroES-like superfamily	SUPERFAMILY	50129	GroES-like	coord: 4..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G06070.2	Clc04G06070.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051085	chaperone cofactor-dependent protein refolding
biological_process	GO:0006457	protein folding
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051082	unfolded protein binding