Clc04G05600 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G05600
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	glutamyl-tRNA reductase-binding protein, chloroplastic
Location	ClcChr04: 18300072 .. 18305199 (+)
RNA-Seq Expression	Clc04G05600
Synteny	Clc04G05600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGTAAATCTTCTATTTTGGAAATCAAGCCGCGTGGAGTTTCTTCAGCCGGCCGGCGAGGGAGTTCGGTGAAAAATGGCGACGGTAACGCCACCTTCCTTAACCCTCCGATTTTGTTCTCGCTCTGCCTTAAATGGCCGAATCGCCTTTCACTTTCCTCGTTCTTTGACTTCCTCTTTCAATTCTCGTCTTCCTCTTCGTCTTCCACTTTCGATGGCTGCGTCAACGGAGTCCACTTCTCAGGTACCTCCTTCTCTCCTCTTTTCCAGCCATCAATTCGCTGTTTAATTTCTTGTTTCTTGTTGATTTCGTTCGTGTGAGAATAGTTTTGAGGCATAGGAAATAGATTTACCGTCTTTCCTTCTGTTTTCGTTTTTGTTATTAGACTGCACCGTCTGGCAATGCTAATAGCGACGACATTGATGTCTCGAAGTTGATTCAAGCTCATCAGGTATTTCTTTCTTTTGTATTATCTTTTTTCGCTCGAGTCGTGAATCAGTGATGCATGCCTGTTTCGTCAGTGGGATTGCCGCTATGGTAGTTTGGTTATGCTTATATATTCAATCTCGAGATTTGAAGATTGAGAAGAGTTATTTGTTGTGTTTTGTGTGTTTTTCAAGTTATTGCTGAATGTAAATGGTAATGTTTTAGGAAAAAGCGGCTCGGCTTTCGCCAGGTGAAGAAATTCGAACACTGTTGGATCAGAGTGTGCGCGGCATGCTCTCCACCTTTTCCCGGGTTTTCACTCTCTTTTGATCTTTGGTCTTGTGTTCTTTATTGCCTTTGGAATTTGCTGCATAACAATAAACTTGTGACTGAGACTGCTTGTGTAGATCTGATTTCTCTGTTAGTCATTTGCATTTGATTGGTTTCTTACTCCTTGGTAATAAGGTCTGCACCTTTGCAGAGCTTTGAAGGTTATCCATCTGGATCTTTAGTTGACTTTGCATGCGATGCTGATGGTACACCTATACTTGCTGTGAGCAGTCTAGCAGAGCACGCTAAGGTATCGTTCATCCTTATGCGCCCAATTGAAAATTTCGGCTTTTGTAGCAATTGAGAATTTTATGTGTCAATTAATCGTTAATCATTTGTAAGTTTGGTCTTTCTTTTCTGTGTAGAACTTGGCAACTAATGCAAAATGCTCGTTGCTTGTGGCAAAAGAACCCGAGGATAGGGGAACTTTAGTGGTCACTCTTCATGGTGATGCCGTGGCTGTAAGATATATAGCTTATATTTGCTATTTATTTCTTCTTTTCATGTGTCGGTCTATCGCATTGCTTCTATATAATCATCAGAAATGCACAGATATGTGTCTTCTTCTTGTGTTTTACAGGATAACTGTTATTATTGGTTGATGCTACGGCATGACAATCTGAATTGTGTTCTTGTTCACAATTTAGGTTTTGGAAGAGGATAGACCTGCTGTTCGTGCTGCATATTTGTCCAAGCATCCAAACGCATTTTGGGTAGCTAATACCAATCTCCAGAATACTTATGTTTTTAATCAAATGTTTCTTCCTTTTATGCATAAAAGATGAATAAATATCTCCTACCTATGTGAAGGTTGACTTTGGTGACTTCCACTTTGTGTACATCAAACCAAAAGCAATAAGATACGTGTCTGGGGTTGCAACAGCTTCTTTGGGTTCAGGAGGTTTGTGTACATAGACTTTCTTTTTTGAGCTTCGCCTTTTCTTTTGCTTTTGTGCATAAAGCTTTGGTCATATGTTTCTTCATGAAAAACAAAGAGCGGACTTGAAGCTGGTTTCTGACCGTCTGCTTAACTCTAAACTGTCTTATTGCTTTATATCAGGCTTGTTCTTGCCACACTGACTTCTTACTTTTCTACCTTTTTAATCCAAGAACTAAGTGGTGAAGAGTACAAGGCAGCACAAGTTGATCCAATAGCTCAATTTGCAAAGCCTGTGACGGTGATAGCATCATCTTAAAATCTTGCTTATTACTTCAACTTTAAACTGTGAATAACATATTTTCTGAATCAGATTCTTCTTCTTCTTTTTCCTTTTAATTTTTAGTCTCACATGAATAGAGATCATGCTGAAGATACAAAGAACATTGTGAGACACTGGACATCTATTCCGGTAATAGTTTTAGATATTTGTTTTGTTTAACTTATGTTTACTCGGGATGATTCAATATTTTGTTAGTTTAACTTTCAATCAGATTCTGTACTTTGTGATCTGGGGTGAGTGATTGGGTCTATATTAGACTGAGTTTTTGGGTAGCTTTTGTGAATAATTTATACCCCAATATAATTTTATAGCAGTTTTAAGGTTTTAGCCATTTCAATTTTAGTAATTGACGCATGGCTACAAAATAACTTCTTGGTTTAAATGTTATCCCCTATTCTACCACTATAGCTTTTCCACACTCTTTTCCAATTGGAAAGGCCTTTGGTAATTTTCCACTGGAGTCTCCCCCTTTTTTGTGATTTTATATCATGAAAAAAATTGTTTCTTAATCAACAAAAGTAGGAGGACAACATATAGTTTTCTCAGGCAGAGAGAAGGAGAGAGATACGATGCCCCACCATGTTCTTTTTCTGATGTGTTTTCAGTACATAATTATATACATATATTGATAAACTATCCTGAGAGACTGTTCTACTATCCTATCTGCAGGTTGATTCTGCCATCATGCTGGATTTGGATAGCCTTGGTTTTAATGTTAAGGTATTGGTACTATTAATTAAAATTGATAATATTAGTTAAATTATTTGTTAAACCTTTTTGCCTTGTATTTGTTGATTTGTTTCACAAAAAATAATTATCGTAAAGTTCTCTGATCCTCTGTTAAAATATATCAGAACATGTTAGGGCAGTTAGTATTATGTCAAAACTTTACATGTTAGGTTAGCTATAGTATGTGGACTCATACCTAATCATGATATTGTTGACCATTAATCTTGATTGGAAGAAATGACAATATAGATCATTGGACGCAGGACTTGGGCCTTTATGCTAATAATGTTATATTGATTGAATTACTTCCAACTTATCGAGCTATTAAATTGATATTTGCTGATAATGTATACTTCACAAAAGGTGTATTGACTTCAATTCTACTTTCTAAAGGGCATATCTTGTTTTGTTTGTATGATTTCCTTTCATGTTTTGTTCATTTAGGCTGATTATCGGGGGACTTCATTTAAGCTTCGTGTACCATTTCCAAGACGAGCCGAAAATAGAAAGTGAGACTTCTTATCCTTGAATTGTCAGTGCTGAGGCAAAAAGTTTACCATTGCATGCTTTTCTGCACTTATGTGTTTTTGGTCTATTGCATCCTTGAATTTACCATTTTGTTGATCAGTTGCTTCTATGGAAATAACTGTTTCTATAATTCTAAGGAATATTCAATTTTCAATTCAATTTTATCAGGTTAAACTATACTCAATTAGTGAAATTAAAAACCTACTCAAGGCCAAGTTAGAAAATTAATTAAAAACCAAACAATCAATTCCATAAGCTTACTGCAAAAACACCTAATCCCAACCACATAAACACCCTATATTCAATTATAATATGAAAAGTAAAAATAATAAAAAATAATAATCGAACTCAGAGCCAAAATGCTCATACCTAATAAAATAACATAAAGGCACAATTCCAGTTTATAACCATAATACTGGCACCTTGCTCAGTCACAGATCACAAGAACACTATCATCTAGCCGTACATCTTTTAAATGATGAAATTCAACCAATTAAAGGTTTTAATATCACTACATATTCGAGTTCAGACTTTAATTTGGTGAAATCAAAATTTTAAGGTTGGAATTGACTCATGATGAAAACAAGAATTACTTGAACTCCATATGCAGTATATGAGGACATTGGTTATGTTTATTGTTAAAGCTAATGGTTATGAGCATTGTATCTATATGTGGAATTTCTCTCCATGTAACATAAGGATATTGCAACATGCATACAAGATACTTGAAAATAACAATGAATTTCTGAAAACTGTAAAGCAATCAATAATTATTGAATCAATTAATTATGACTGGAAATCTTAAGCATCTAACACGAGAGTGCATTTTTGTGTAGGAAAATATATCTTTTCATCTATATTTTGATTTTCATTTGCCATTTTTTATTGCGGAGTGATGTTTTCTGTTGAAGTCCCGGTCATATTGCAAAGGTTGATCTGACTGTAAGCTCCTTATTTCATAACTATTTTTTGTTTTTGATTTTTTAAAATTAAGCTTATAAATACTATTTTCACGCATAAGTTCCTTCTTTGTTTTGGTATCCAAAAAAATCAAACTAAGTTTTGAAAACTAAAAAAAAATTGGCCTCATTTAATGACTATCTAGTTTTATTTTTGAAAATCAAGTTTATAAACACTATTTCTACCTATTGATTTCTTTATTTTGTTTACTTTCTAATTGTGTTTTCTTGAAAACTACAAAAAGTAATTTTTTGAAGCCTATTTTTTGATTTTGGAATTTGACTAAAAATTAAAATGTCAACATAGGAAAGATGAAAAATATGATTAAAAAATTGTGAGAAAACAAACATAATTTTTAAAAGCCAAAAACTAAAATCCAAATGGCTATCCGTAGTTTCAAAAGCTTATTTTAATTTTTAGAGTATAACTCAAAATTTAAGTGTTTTTTTAATCATAATACAAAAATTAGGAGATAACAAGCATAAATTTCAAAAAACATAAAACTAAAAACAAAATCATTATCGGAAAAGAGTAGTATTGTCATTCAAATGGAAAAAATCCTTGCACTTTCTCATCGTTTTGAATATTTAAGCCCTTTTCTTTGCTGTCTGCTTACTTTTTTTCTTCCTCCTTTTTAGGGACGTCAAGACTCTTGTGGTGGAAATGCTAGAAGCTGCTAAGCCACAAGTTTGACCTTCACGGGAAGATGGCCAATTATGTGTTCTGTCTAATGCTTATATTAAATTTCGCATAACTTTTCTGAGCTTGCTCTTGGCATCTTTAAGTATTAGCATTGCCTCTCATAAAGTAGTTTTGAAGTTATACATGATATCTGAGAAACAGACCATACATGTAAATCTGATTAAATTTCTAAATGATCACTTGTAAATTCATTTTACTGTTTGTGAATGACCTCTGGCTGAGCCGTTTCCAG

mRNA sequence

TTTGGTAAATCTTCTATTTTGGAAATCAAGCCGCGTGGAGTTTCTTCAGCCGGCCGGCGAGGGAGTTCGGTGAAAAATGGCGACGGTAACGCCACCTTCCTTAACCCTCCGATTTTGTTCTCGCTCTGCCTTAAATGGCCGAATCGCCTTTCACTTTCCTCGTTCTTTGACTTCCTCTTTCAATTCTCGTCTTCCTCTTCGTCTTCCACTTTCGATGGCTGCGTCAACGGAGTCCACTTCTCAGACTGCACCGTCTGGCAATGCTAATAGCGACGACATTGATGTCTCGAAGTTGATTCAAGCTCATCAGGTATTTCTTTCTTTTGAAAAAGCGGCTCGGCTTTCGCCAGGTGAAGAAATTCGAACACTGTTGGATCAGAGTGTGCGCGGCATGCTCTCCACCTTTTCCCGGAGCTTTGAAGGTTATCCATCTGGATCTTTAGTTGACTTTGCATGCGATGCTGATGGTACACCTATACTTGCTGTGAGCAGTCTAGCAGAGCACGCTAAGAACTTGGCAACTAATGCAAAATGCTCGTTGCTTGTGGCAAAAGAACCCGAGGATAGGGGAACTTTAGTGGTCACTCTTCATGGTGATGCCGTGGCTGTTTTGGAAGAGGATAGACCTGCTGTTCGTGCTGCATATTTGTCCAAGCATCCAAACGCATTTTGGGTAGCTAATACCAATCTCCAGAATACTTATGTTTTTAATCAAATGCTTGTTCTTGCCACACTGACTTCTTACTTTTCTACCTTTTTAATCCAAGAACTAAGTGGTGAAGAGTACAAGGCAGCACAAGTTGATCCAATAGCTCAATTTGCAAAGCCTGTGACGTCTCACATGAATAGAGATCATGCTGAAGATACAAAGAACATTGTGAGACACTGGACATCTATTCCGATTCTGTACTTTGTGATCTGGGGAGGACAACATATAGTTTTCTCAGGCAGAGAGAAGGAGAGAGATACGATGCCCCACCATGTTGATTCTGCCATCATGCTGGATTTGGATAGCCTTGGTTTTAATGTTAAGGCTGATTATCGGGGGACTTCATTTAAGCTTCGTGTACCATTTCCAAGACGAGCCGAAAATAGAAAGGACGTCAAGACTCTTGTGGTGGAAATGCTAGAAGCTGCTAAGCCACAAGTTTGACCTTCACGGGAAGATGGCCAATTATGTGTTCTGTCTAATGCTTATATTAAATTTCGCATAACTTTTCTGAGCTTGCTCTTGGCATCTTTAAGTATTAGCATTGCCTCTCATAAAGTAGTTTTGAAGTTATACATGATATCTGAGAAACAGACCATACATGTAAATCTGATTAAATTTCTAAATGATCACTTGTAAATTCATTTTACTGTTTGTGAATGACCTCTGGCTGAGCCGTTTCCAG

Coding sequence (CDS)

ATGGCGACGGTAACGCCACCTTCCTTAACCCTCCGATTTTGTTCTCGCTCTGCCTTAAATGGCCGAATCGCCTTTCACTTTCCTCGTTCTTTGACTTCCTCTTTCAATTCTCGTCTTCCTCTTCGTCTTCCACTTTCGATGGCTGCGTCAACGGAGTCCACTTCTCAGACTGCACCGTCTGGCAATGCTAATAGCGACGACATTGATGTCTCGAAGTTGATTCAAGCTCATCAGGTATTTCTTTCTTTTGAAAAAGCGGCTCGGCTTTCGCCAGGTGAAGAAATTCGAACACTGTTGGATCAGAGTGTGCGCGGCATGCTCTCCACCTTTTCCCGGAGCTTTGAAGGTTATCCATCTGGATCTTTAGTTGACTTTGCATGCGATGCTGATGGTACACCTATACTTGCTGTGAGCAGTCTAGCAGAGCACGCTAAGAACTTGGCAACTAATGCAAAATGCTCGTTGCTTGTGGCAAAAGAACCCGAGGATAGGGGAACTTTAGTGGTCACTCTTCATGGTGATGCCGTGGCTGTTTTGGAAGAGGATAGACCTGCTGTTCGTGCTGCATATTTGTCCAAGCATCCAAACGCATTTTGGGTAGCTAATACCAATCTCCAGAATACTTATGTTTTTAATCAAATGCTTGTTCTTGCCACACTGACTTCTTACTTTTCTACCTTTTTAATCCAAGAACTAAGTGGTGAAGAGTACAAGGCAGCACAAGTTGATCCAATAGCTCAATTTGCAAAGCCTGTGACGTCTCACATGAATAGAGATCATGCTGAAGATACAAAGAACATTGTGAGACACTGGACATCTATTCCGATTCTGTACTTTGTGATCTGGGGAGGACAACATATAGTTTTCTCAGGCAGAGAGAAGGAGAGAGATACGATGCCCCACCATGTTGATTCTGCCATCATGCTGGATTTGGATAGCCTTGGTTTTAATGTTAAGGCTGATTATCGGGGGACTTCATTTAAGCTTCGTGTACCATTTCCAAGACGAGCCGAAAATAGAAAGGACGTCAAGACTCTTGTGGTGGAAATGCTAGAAGCTGCTAAGCCACAAGTTTGA

Protein sequence

MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPSGNANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPSGSLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVLEEDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQMLVLATLTSYFSTFLIQELSGEEYKAAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDTMPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV

Homology

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BLAST of Clc04G05600 vs. NCBI nr
Match: XP_038883739.1 (uncharacterized protein LOC120074631 isoform X1 [Benincasa hispida])

HSP 1 Score: 508.1 bits (1307), Expect = 6.4e-140
Identity = 281/360 (78.06%), Postives = 291/360 (80.83%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MAT+TPPSLT RFCSRSA NGRIAF+FPRSLTSS N R  LRLPLSMAASTESTSQT PS
Sbjct: 1   MATLTPPSLTFRFCSRSAFNGRIAFYFPRSLTSSLNPR--LRLPLSMAASTESTSQTVPS 60

Query: 61  GNANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPSG 120
           GNANSDDIDVSKLIQAHQ     EKAARLSP EEIRTLLDQSVRGMLSTFSRSFEGYPSG
Sbjct: 61  GNANSDDIDVSKLIQAHQ-----EKAARLSPAEEIRTLLDQSVRGMLSTFSRSFEGYPSG 120

Query: 121 SLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVLE 180
           S VDFACDADGTPILAVSSLAEHAKNLATN KCSLLVAKEPEDRGTLVVTLHGDAV V E
Sbjct: 121 SFVDFACDADGTPILAVSSLAEHAKNLATNPKCSLLVAKEPEDRGTLVVTLHGDAVVVPE 180

Query: 181 EDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQML--VLATLTSYFSTFLIQELSGEEYK 240
           EDRPA RAAYLSKHPNAFWV   +    Y+  + +  V    T+   +    ELSGEEYK
Sbjct: 181 EDRPAARAAYLSKHPNAFWVDFGDFHFVYIKPKAIRYVSGVATASLGS---GELSGEEYK 240

Query: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDT 300
           AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP                       
Sbjct: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP----------------------- 300

Query: 301 MPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 359
               VDSAIMLDLDSLGFNV+A Y+GTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV
Sbjct: 301 ----VDSAIMLDLDSLGFNVQAGYQGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 323

[Close]

BLAST of Clc04G05600 vs. NCBI nr
Match: XP_038883740.1 (glutamyl-tRNA reductase-binding protein, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 503.4 bits (1295), Expect = 1.6e-138
Identity = 281/360 (78.06%), Postives = 291/360 (80.83%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MAT+TPPSLT RFCSRSA NGRIAF+FPRSLTSS N R  LRLPLSMAASTESTSQT PS
Sbjct: 1   MATLTPPSLTFRFCSRSAFNGRIAFYFPRSLTSSLNPR--LRLPLSMAASTESTSQTVPS 60

Query: 61  GNANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPSG 120
           GNANSDDIDVSKLIQAHQ     EKAARLSP EEIRTLLDQSVRGMLSTFSRSFEGYPSG
Sbjct: 61  GNANSDDIDVSKLIQAHQ-----EKAARLSPAEEIRTLLDQSVRGMLSTFSRSFEGYPSG 120

Query: 121 SLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVLE 180
           S VDFACDADGTPILAVSSLAEHAKNLATN KCSLLVAKEPEDRGTLVVTLHGDAV V E
Sbjct: 121 SFVDFACDADGTPILAVSSLAEHAKNLATNPKCSLLVAKEPEDRGTLVVTLHGDAV-VPE 180

Query: 181 EDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQML--VLATLTSYFSTFLIQELSGEEYK 240
           EDRPA RAAYLSKHPNAFWV   +    Y+  + +  V    T+   +    ELSGEEYK
Sbjct: 181 EDRPAARAAYLSKHPNAFWVDFGDFHFVYIKPKAIRYVSGVATASLGS---GELSGEEYK 240

Query: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDT 300
           AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP                       
Sbjct: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP----------------------- 300

Query: 301 MPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 359
               VDSAIMLDLDSLGFNV+A Y+GTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV
Sbjct: 301 ----VDSAIMLDLDSLGFNVQAGYQGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 322

[Close]

BLAST of Clc04G05600 vs. NCBI nr
Match: XP_008441986.1 (PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic [Cucumis melo])

HSP 1 Score: 501.5 bits (1290), Expect = 5.9e-138
Identity = 280/360 (77.78%), Postives = 291/360 (80.83%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MAT+TPP+LT R CS +ALNGRIAFHFPRSLTSSFN R  LRLPLSMAAST+STSQ APS
Sbjct: 1   MATLTPPTLTFRICSHTALNGRIAFHFPRSLTSSFNHR--LRLPLSMAASTDSTSQ-APS 60

Query: 61  GNANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPSG 120
           G ANSDDIDVSKLIQAHQ     EKAARLSP EEIRTLLDQSVRG LSTFSRSFEGYPSG
Sbjct: 61  GYANSDDIDVSKLIQAHQ-----EKAARLSPAEEIRTLLDQSVRGTLSTFSRSFEGYPSG 120

Query: 121 SLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVLE 180
           S VDFACDADGTPILAVSSLAEHAKNL TN KCSLLVAKEPEDRGTLVVTLHGDAVAV E
Sbjct: 121 SFVDFACDADGTPILAVSSLAEHAKNLETNPKCSLLVAKEPEDRGTLVVTLHGDAVAVSE 180

Query: 181 EDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQML--VLATLTSYFSTFLIQELSGEEYK 240
           EDRPAVRAAYLSKHPNAFWV   +    Y+  +++  V    T+   +    ELSGEEY 
Sbjct: 181 EDRPAVRAAYLSKHPNAFWVDFGDFNFVYIKPRVIRYVSGIATASLGS---GELSGEEYM 240

Query: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDT 300
           AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP                       
Sbjct: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP----------------------- 300

Query: 301 MPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 359
               VDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV
Sbjct: 301 ----VDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 322

[Close]

BLAST of Clc04G05600 vs. NCBI nr
Match: XP_004147536.1 (glutamyl-tRNA reductase-binding protein, chloroplastic [Cucumis sativus] >KGN53937.1 hypothetical protein Csa_021567 [Cucumis sativus])

HSP 1 Score: 489.2 bits (1258), Expect = 3.1e-134
Identity = 275/360 (76.39%), Postives = 288/360 (80.00%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MATVTPP+LT R  S +ALNGRI+FHF RSLTSSFN RL L LPLSMAAST+STSQ APS
Sbjct: 1   MATVTPPTLTFRIPSPTALNGRISFHFSRSLTSSFNLRLRLPLPLSMAASTDSTSQ-APS 60

Query: 61  GNANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPSG 120
           G ANSDDIDVSKLIQAHQ     EKAARLSP EEIRTLLDQSVRG LSTFSRSFEGYPSG
Sbjct: 61  GYANSDDIDVSKLIQAHQ-----EKAARLSPVEEIRTLLDQSVRGTLSTFSRSFEGYPSG 120

Query: 121 SLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVLE 180
           S VDFACDADGTPILAVSSLAEHAKNL TN KCSLLVAKEPEDRGTLVVTLHGDAVAV E
Sbjct: 121 SFVDFACDADGTPILAVSSLAEHAKNLETNPKCSLLVAKEPEDRGTLVVTLHGDAVAVSE 180

Query: 181 EDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQML--VLATLTSYFSTFLIQELSGEEYK 240
           EDRPAVRAAYLSKHPNAFWV   +    Y+  +++  V    T+   +    ELS EEY 
Sbjct: 181 EDRPAVRAAYLSKHPNAFWVDFGDFNFVYIKPKVIRYVSGIATASLGS---GELSSEEYM 240

Query: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDT 300
           AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP                       
Sbjct: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP----------------------- 300

Query: 301 MPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 359
               VDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAE+RKDVKTLVVEM+EAAKPQV
Sbjct: 301 ----VDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAESRKDVKTLVVEMVEAAKPQV 324

[Close]

BLAST of Clc04G05600 vs. NCBI nr
Match: KAG6595502.1 (hypothetical protein SDJN03_12055, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 479.6 bits (1233), Expect = 2.4e-131
Identity = 266/360 (73.89%), Postives = 282/360 (78.33%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MATVTPPSLT +FCSR+  NGRI FHFP SL SSFN RL  RLP SMAASTESTSQ   S
Sbjct: 1   MATVTPPSLTFQFCSRNTFNGRIGFHFPCSLASSFNPRLRFRLPFSMAASTESTSQAVAS 60

Query: 61  G-NANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPS 120
           G +ANSD+IDVSKLIQAHQ     EKAARL P EEIR LLDQSVRGMLSTFSRSFEGYPS
Sbjct: 61  GDDANSDEIDVSKLIQAHQ-----EKAARLLPAEEIRALLDQSVRGMLSTFSRSFEGYPS 120

Query: 121 GSLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVL 180
           GS VDFACDADGTPILAVSSLAEHAKNLA N KCSLLVAKEPEDRGTLVVT+HGDAV V 
Sbjct: 121 GSFVDFACDADGTPILAVSSLAEHAKNLAANPKCSLLVAKEPEDRGTLVVTVHGDAVPVS 180

Query: 181 EEDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQMLVLATLTSYFSTFL-IQELSGEEYK 240
           EEDRPAVRAAYLSKHPNAFWV   + Q  +V+ ++ V+  ++   +  L   ELS EEYK
Sbjct: 181 EEDRPAVRAAYLSKHPNAFWVDFGDFQ--FVYIKLKVIRYVSGVATASLGSGELSSEEYK 240

Query: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDT 300
           AAQVDPIAQFAKPV SHMNRDH EDTK IVRHWTSIP                       
Sbjct: 241 AAQVDPIAQFAKPVMSHMNRDHTEDTKMIVRHWTSIP----------------------- 300

Query: 301 MPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 359
               VDSAIMLDLDSLGFNVKA Y+G SFKLRVPFPRRAENRKDVKTL+VEMLEAAKPQV
Sbjct: 301 ----VDSAIMLDLDSLGFNVKASYQGNSFKLRVPFPRRAENRKDVKTLIVEMLEAAKPQV 326

[Close]

BLAST of Clc04G05600 vs. ExPASy TrEMBL
Match: A0A1S3B460 (glutamyl-tRNA reductase-binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485983 PE=4 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.9e-138
Identity = 280/360 (77.78%), Postives = 291/360 (80.83%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MAT+TPP+LT R CS +ALNGRIAFHFPRSLTSSFN R  LRLPLSMAAST+STSQ APS
Sbjct: 1   MATLTPPTLTFRICSHTALNGRIAFHFPRSLTSSFNHR--LRLPLSMAASTDSTSQ-APS 60

Query: 61  GNANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPSG 120
           G ANSDDIDVSKLIQAHQ     EKAARLSP EEIRTLLDQSVRG LSTFSRSFEGYPSG
Sbjct: 61  GYANSDDIDVSKLIQAHQ-----EKAARLSPAEEIRTLLDQSVRGTLSTFSRSFEGYPSG 120

Query: 121 SLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVLE 180
           S VDFACDADGTPILAVSSLAEHAKNL TN KCSLLVAKEPEDRGTLVVTLHGDAVAV E
Sbjct: 121 SFVDFACDADGTPILAVSSLAEHAKNLETNPKCSLLVAKEPEDRGTLVVTLHGDAVAVSE 180

Query: 181 EDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQML--VLATLTSYFSTFLIQELSGEEYK 240
           EDRPAVRAAYLSKHPNAFWV   +    Y+  +++  V    T+   +    ELSGEEY 
Sbjct: 181 EDRPAVRAAYLSKHPNAFWVDFGDFNFVYIKPRVIRYVSGIATASLGS---GELSGEEYM 240

Query: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDT 300
           AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP                       
Sbjct: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP----------------------- 300

Query: 301 MPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 359
               VDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV
Sbjct: 301 ----VDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 322

[Close]

BLAST of Clc04G05600 vs. ExPASy TrEMBL
Match: A0A0A0KZZ8 (DUF2470 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G192090 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.5e-134
Identity = 275/360 (76.39%), Postives = 288/360 (80.00%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MATVTPP+LT R  S +ALNGRI+FHF RSLTSSFN RL L LPLSMAAST+STSQ APS
Sbjct: 1   MATVTPPTLTFRIPSPTALNGRISFHFSRSLTSSFNLRLRLPLPLSMAASTDSTSQ-APS 60

Query: 61  GNANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPSG 120
           G ANSDDIDVSKLIQAHQ     EKAARLSP EEIRTLLDQSVRG LSTFSRSFEGYPSG
Sbjct: 61  GYANSDDIDVSKLIQAHQ-----EKAARLSPVEEIRTLLDQSVRGTLSTFSRSFEGYPSG 120

Query: 121 SLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVLE 180
           S VDFACDADGTPILAVSSLAEHAKNL TN KCSLLVAKEPEDRGTLVVTLHGDAVAV E
Sbjct: 121 SFVDFACDADGTPILAVSSLAEHAKNLETNPKCSLLVAKEPEDRGTLVVTLHGDAVAVSE 180

Query: 181 EDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQML--VLATLTSYFSTFLIQELSGEEYK 240
           EDRPAVRAAYLSKHPNAFWV   +    Y+  +++  V    T+   +    ELS EEY 
Sbjct: 181 EDRPAVRAAYLSKHPNAFWVDFGDFNFVYIKPKVIRYVSGIATASLGS---GELSSEEYM 240

Query: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDT 300
           AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP                       
Sbjct: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIP----------------------- 300

Query: 301 MPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQV 359
               VDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAE+RKDVKTLVVEM+EAAKPQV
Sbjct: 301 ----VDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAESRKDVKTLVVEMVEAAKPQV 324

[Close]

BLAST of Clc04G05600 vs. ExPASy TrEMBL
Match: A0A6J1ITI7 (glutamyl-tRNA reductase-binding protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478273 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 2.6e-131
Identity = 266/359 (74.09%), Postives = 287/359 (79.94%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MATV P SLTLRFCSR+ALNGRIA HFPRSL SSFN R  LRL  SMAASTESTSQ   S
Sbjct: 1   MATVVPHSLTLRFCSRTALNGRIASHFPRSLISSFNPR--LRLSFSMAASTESTSQIVAS 60

Query: 61  GNANSDDIDVSKLIQAHQVFLSFEKAAR--LSPGEEIRTLLDQSVRGMLSTFSRSFEGYP 120
           G+ANS++IDVSKLIQAHQ     EKAAR  LSP EEIRTL+DQ VRGMLSTFSR FEGYP
Sbjct: 61  GDANSEEIDVSKLIQAHQ-----EKAARLSLSPAEEIRTLMDQRVRGMLSTFSRRFEGYP 120

Query: 121 SGSLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAV 180
           SGS VDFACDADGTPILAVSSLAEHAKNLATN+KCSLLVAKEPEDRGTLVVTLHGDAVAV
Sbjct: 121 SGSFVDFACDADGTPILAVSSLAEHAKNLATNSKCSLLVAKEPEDRGTLVVTLHGDAVAV 180

Query: 181 LEEDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQMLVLATLTSYFSTFLIQELSGEEYK 240
            EEDRPAVRAAYLSKHPNAFWV   + Q  Y+  +++   T  +  ++    ELS EEYK
Sbjct: 181 PEEDRPAVRAAYLSKHPNAFWVDFGDFQFVYIKPKIIRYVTGVA-TASLRSGELSDEEYK 240

Query: 241 AAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDT 300
           AA+VDP+AQF+KPVTSHMNRDHAEDTKNIVRHWTSIP                       
Sbjct: 241 AARVDPVAQFSKPVTSHMNRDHAEDTKNIVRHWTSIP----------------------- 300

Query: 301 MPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQ 358
               VDSAIMLDLDSLGFNV+A Y+G+SFKLR+PFPRRAENRKDVKTLVVEMLEAAKPQ
Sbjct: 301 ----VDSAIMLDLDSLGFNVEAGYQGSSFKLRIPFPRRAENRKDVKTLVVEMLEAAKPQ 324

[Close]

BLAST of Clc04G05600 vs. ExPASy TrEMBL
Match: A0A6J1EGN2 (glutamyl-tRNA reductase-binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111432378 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 7.6e-131
Identity = 265/361 (73.41%), Postives = 280/361 (77.56%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MATVTPPSLT +F SR+  NGRI FHFPRSL SSFN RL  RLP SMAASTESTSQ   S
Sbjct: 1   MATVTPPSLTFQFRSRNTFNGRIGFHFPRSLASSFNPRLRFRLPFSMAASTESTSQAVAS 60

Query: 61  G-NANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPS 120
           G +ANSD+IDVSKLIQAHQ     EKAARL P EEIRTLLDQSVRGMLSTFSRSFEGYPS
Sbjct: 61  GDDANSDEIDVSKLIQAHQ-----EKAARLLPAEEIRTLLDQSVRGMLSTFSRSFEGYPS 120

Query: 121 GSLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVL 180
           GS VDFACDADGTPILAVSSLAEHAKNLA N KCSLLVAKEPEDRGTLVVT+HGDAV V 
Sbjct: 121 GSFVDFACDADGTPILAVSSLAEHAKNLAANPKCSLLVAKEPEDRGTLVVTVHGDAVPVS 180

Query: 181 EEDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQML--VLATLTSYFSTFLIQELSGEEY 240
           EEDRPAVRAAYLSKHPNAFWV   + Q  Y+  +++  V    T+   +    ELS EEY
Sbjct: 181 EEDRPAVRAAYLSKHPNAFWVDFGDFQFVYIKPKVIRYVSGVATASLGS---GELSSEEY 240

Query: 241 KAAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERD 300
           KAAQVDPI QFAKPV SHMNRDH EDTK IVRHW+SIP                      
Sbjct: 241 KAAQVDPIVQFAKPVMSHMNRDHTEDTKMIVRHWSSIP---------------------- 300

Query: 301 TMPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQ 359
                VDSAIMLDLDSLGFNVKA Y+G SFKLRVPFPRRAENRKDVKTL+VEMLEAAKPQ
Sbjct: 301 -----VDSAIMLDLDSLGFNVKASYQGNSFKLRVPFPRRAENRKDVKTLIVEMLEAAKPQ 326

[Close]

BLAST of Clc04G05600 vs. ExPASy TrEMBL
Match: A0A6J1HMU8 (glutamyl-tRNA reductase-binding protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111466055 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 3.2e-129
Identity = 262/361 (72.58%), Postives = 278/361 (77.01%), Query Frame = 0


Query: 1   MATVTPPSLTLRFCSRSALNGRIAFHFPRSLTSSFNSRLPLRLPLSMAASTESTSQTAPS 60
           MATVTPPSLT +F  R+  NGRI F FPRSL SSFN RL  RLP  M+ASTESTSQ   S
Sbjct: 1   MATVTPPSLTFQFRPRNTFNGRIGFRFPRSLASSFNPRLRFRLPFLMSASTESTSQAVAS 60

Query: 61  G-NANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSVRGMLSTFSRSFEGYPS 120
           G +ANSD+ID+SKLIQAHQ     EKAARL P EEIRTLLDQSVRGMLSTFSRSFEGYPS
Sbjct: 61  GDDANSDEIDISKLIQAHQ-----EKAARLLPAEEIRTLLDQSVRGMLSTFSRSFEGYPS 120

Query: 121 GSLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPEDRGTLVVTLHGDAVAVL 180
           GS VDFACDADGTPILAVSSLAEHAKNLATN KCSLLVAKEPEDRGTLVVT+HGDAV V 
Sbjct: 121 GSFVDFACDADGTPILAVSSLAEHAKNLATNPKCSLLVAKEPEDRGTLVVTVHGDAVPVS 180

Query: 181 EEDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQML--VLATLTSYFSTFLIQELSGEEY 240
           EEDRPAVRAAYLSKHPNAFWV   + Q  Y+  +++  V    T+   +    ELS EEY
Sbjct: 181 EEDRPAVRAAYLSKHPNAFWVDFGDFQFVYIKPKVIRYVSGVATASLGS---GELSSEEY 240

Query: 241 KAAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERD 300
           KA QVDPIAQFAKPV SHMNRDH EDTK IVRHWTSIP                      
Sbjct: 241 KATQVDPIAQFAKPVMSHMNRDHTEDTKMIVRHWTSIP---------------------- 300

Query: 301 TMPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKDVKTLVVEMLEAAKPQ 359
                VDSAIMLDLDSLGFNVKA Y+G SFKLRVPFPRRAENRKDVKTL+VEMLEAAKPQ
Sbjct: 301 -----VDSAIMLDLDSLGFNVKASYQGNSFKLRVPFPRRAENRKDVKTLIVEMLEAAKPQ 326

[Close]

BLAST of Clc04G05600 vs. TAIR 10
Match: AT3G03890.1 (FMN binding )

HSP 1 Score: 324.7 bits (831), Expect = 9.3e-89
Identity = 183/313 (58.47%), Postives = 228/313 (72.84%), Query Frame = 0


Query: 44  PLSMAASTESTSQTAPSGNANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSV 103
           PL+MA++ +S+SQ    G+ NS D DV KLIQAH+     EKAARLSP EEIRT+L+ S+
Sbjct: 42  PLTMASAAQSSSQAVSYGSGNS-DTDVFKLIQAHE-----EKAARLSPVEEIRTVLNGSI 101

Query: 104 RGMLSTFSRSFEGYPSGSLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPED 163
            GMLSTFS+ +EGYPSGS+VDFACDADG+PILAVSSLA H K+L  N KCSLL+A++PED
Sbjct: 102 CGMLSTFSQKYEGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLANPKCSLLIARDPED 161

Query: 164 RGTLVVTLHGDAVAVLEEDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQMLVLATLTSY 223
           R  L +TLHGDAV V E+D+ AVR+AYL+KHP AFWV   +   +++  +  V+  ++  
Sbjct: 162 RTGLRITLHGDAVLVSEKDQAAVRSAYLAKHPKAFWVDFGDF--SFMRIEPKVVRYVSGV 221

Query: 224 FSTFL-IQELSGEEYKAAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIW 283
            + FL   E S EEY+AA+VDPIAQ+AKPVTSHMN+DH EDTK IV + TSIP       
Sbjct: 222 ATAFLGSGEFSKEEYQAAKVDPIAQYAKPVTSHMNKDHEEDTKAIVHNITSIP------- 281

Query: 284 GGQHIVFSGREKERDTMPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRKD 343
                               V+SA+MLDLDSLGFNVKA  +G +FKLRVPFPRRA++RKD
Sbjct: 282 --------------------VESALMLDLDSLGFNVKATLQGNTFKLRVPFPRRAQDRKD 319

Query: 344 VKTLVVEMLEAAK 356
           VKTL+VEML+AAK
Sbjct: 342 VKTLIVEMLQAAK 319

[Close]

BLAST of Clc04G05600 vs. TAIR 10
Match: AT3G03890.2 (FMN binding )

HSP 1 Score: 302.0 bits (772), Expect = 6.4e-82
Identity = 171/299 (57.19%), Postives = 214/299 (71.57%), Query Frame = 0


Query: 44  PLSMAASTESTSQTAPSGNANSDDIDVSKLIQAHQVFLSFEKAARLSPGEEIRTLLDQSV 103
           PL+MA++ +S+SQ    G+ NS D DV KLIQAH+     EKAARLSP EEIRT+L+ S+
Sbjct: 42  PLTMASAAQSSSQAVSYGSGNS-DTDVFKLIQAHE-----EKAARLSPVEEIRTVLNGSI 101

Query: 104 RGMLSTFSRSFEGYPSGSLVDFACDADGTPILAVSSLAEHAKNLATNAKCSLLVAKEPED 163
            GMLSTFS+ +EGYPSGS+VDFACDADG+PILAVSSLA H K+L  N KCSLL+A++PED
Sbjct: 102 CGMLSTFSQKYEGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLANPKCSLLIARDPED 161

Query: 164 RGTLVVTLHGDAVAVLEEDRPAVRAAYLSKHPNAFWVANTNLQNTYVFNQMLVLATLTSY 223
           R  L +TLHGDAV V E+D+ AVR+AYL+KHP AFWV   +   +++  +  V+  ++  
Sbjct: 162 RTGLRITLHGDAVLVSEKDQAAVRSAYLAKHPKAFWVDFGDF--SFMRIEPKVVRYVSGV 221

Query: 224 FSTFL-IQELSGEEYKAAQVDPIAQFAKPVTSHMNRDHAEDTKNIVRHWTSIPILYFVIW 283
            + FL   E S EEY+AA+VDPIAQ+AKPVTSHMN+DH EDTK IV + TSIP       
Sbjct: 222 ATAFLGSGEFSKEEYQAAKVDPIAQYAKPVTSHMNKDHEEDTKAIVHNITSIP------- 281

Query: 284 GGQHIVFSGREKERDTMPHHVDSAIMLDLDSLGFNVKADYRGTSFKLRVPFPRRAENRK 342
                               V+SA+MLDLDSLGFNVKA  +G +FKLRVPFPRRA++RK
Sbjct: 282 --------------------VESALMLDLDSLGFNVKATLQGNTFKLRVPFPRRAQDRK 305

[Close]

BLAST of Clc04G05600 vs. TAIR 10
Match: AT3G21140.1 (Pyridoxamine 5'-phosphate oxidase family protein )

HSP 1 Score: 65.9 bits (159), Expect = 7.8e-11
Identity = 43/112 (38.39%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 91  PGEEIRTLLDQS----VRGMLSTFSRSFEGYPSGSLVDFACDADGTPILAVSSLAEHAKN 150
           P   +R LL+Q+    +  ++S      EGYP GSLVDFA D  G PI   S LA H +N
Sbjct: 143 PALAVRNLLEQARFAHLCTVMSKMHHRREGYPFGSLVDFAPDRMGHPIFLFSPLAIHTRN 202

Query: 151 LATNAKCSLLVAKEPEDRG--TLVVTLHGDAVAVLEEDRPAVRAAYLSKHPN 197
           L    +CSL+V + P   G     VTL GD   + E+++      Y++KHP+
Sbjct: 203 LLNEPRCSLVV-QIPGWSGLSNARVTLFGDVYPLSEDEQEWAHKQYIAKHPH 253

[Close]

BLAST of Clc04G05600 vs. TAIR 10
Match: AT1G51560.1 (Pyridoxamine 5'-phosphate oxidase family protein )

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-09
Identity = 66/276 (23.91%), Postives = 115/276 (41.67%), Query Frame = 0


Query: 91  PGEEIRTLLDQS----VRGMLSTFSRSFEGYPSGSLVDFACDADGTPILAVSSLAEHAKN 150
           P   +R L++Q+    +  ++S      EGYP GSLVDFA D  G PI + S LA H +N
Sbjct: 147 PALAVRNLMEQARFAHLCTVMSKMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRN 206

Query: 151 LATNAKCSLLVAKEP-EDRGTLVVTLHGDAVAVLEEDRPAVRAAYLSKH---PNAFWVAN 210
           +    +C+L+V            VTL GD   + EE +      Y+ KH   P+  W   
Sbjct: 207 ILAEPRCTLVVQIPGWSCLSNARVTLFGDVYPLPEEQQEWAHKQYMLKHHQGPSQQW--- 266

Query: 211 TNLQNTYVFNQMLVLATLTSYFSTFLIQELSGEEYKAAQVDPIAQFAKPVTSHMNRDHAE 270
                 + + +M  ++ +        +  ++  EY+  Q D IA            D  E
Sbjct: 267 ----GNFHYFRMQNISDIYFIGGFGTVAWINVNEYETLQPDKIAV-----------DGGE 326

Query: 271 DTKNIVRHWTSIPILYFVIWGGQHIVFSGREKERDTMPHHVDSAIMLDLDSLGFNVKADY 330
                +                 + +FS   +E  +    +D A ++ +DS G +++   
Sbjct: 327 QNLKEL-----------------NAIFSKPLRELLSSEAELDDAAIISIDSKGIDIRV-R 386

Query: 331 RGTSFKL-RVPFPRR--AENRKDVKTLVVEMLEAAK 356
           +G  FK+ R+ F      E  ++ K+ + +++E  K
Sbjct: 387 QGAQFKIQRLAFEESHGVETLEEAKSALWKVIEKGK 386

The following BLAST results are available for this feature:

BLAST of Clc04G05600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883739.1	6.4e-140	78.06	uncharacterized protein LOC120074631 isoform X1 [Benincasa hispida]	[more]
XP_038883740.1	1.6e-138	78.06	glutamyl-tRNA reductase-binding protein, chloroplastic isoform X2 [Benincasa his...	[more]
XP_008441986.1	5.9e-138	77.78	PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic [Cucumis melo]	[more]
XP_004147536.1	3.1e-134	76.39	glutamyl-tRNA reductase-binding protein, chloroplastic [Cucumis sativus] >KGN539...	[more]
KAG6595502.1	2.4e-131	73.89	hypothetical protein SDJN03_12055, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc04G05600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G05600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B460	2.9e-138	77.78	glutamyl-tRNA reductase-binding protein, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
A0A0A0KZZ8	1.5e-134	76.39	DUF2470 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G192090 PE=...	[more]
A0A6J1ITI7	2.6e-131	74.09	glutamyl-tRNA reductase-binding protein, chloroplastic-like OS=Cucurbita maxima ...	[more]
A0A6J1EGN2	7.6e-131	73.41	glutamyl-tRNA reductase-binding protein, chloroplastic OS=Cucurbita moschata OX=...	[more]
A0A6J1HMU8	3.2e-129	72.58	glutamyl-tRNA reductase-binding protein, chloroplastic-like OS=Cucurbita maxima ...	[more]

BLAST of Clc04G05600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03890.1	9.3e-89	58.47	FMN binding	[more]
AT3G03890.2	6.4e-82	57.19	FMN binding	[more]
AT3G21140.1	7.8e-11	38.39	Pyridoxamine 5'-phosphate oxidase family protein	[more]
AT1G51560.1	3.3e-09	23.91	Pyridoxamine 5'-phosphate oxidase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011576	Pyridoxamine 5'-phosphate oxidase, putative	PFAM	PF01243	Putative_PNPOx	coord: 93..181 e-value: 1.3E-11 score: 44.5
IPR012349	FMN-binding split barrel	GENE3D	2.30.110.10		coord: 70..220 e-value: 6.3E-28 score: 99.4
IPR019595	Domain of unknown function DUF2470	PFAM	PF10615	DUF2470	coord: 251..350 e-value: 9.7E-15 score: 55.0
IPR037119	Haem oxygenase HugZ-like superfamily	GENE3D	3.20.180.10		coord: 295..358 e-value: 6.1E-13 score: 50.9 coord: 242..278 e-value: 1.5E-5 score: 27.0
None	No IPR available	PANTHER	PTHR13343	CREG1 PROTEIN	coord: 30..276
None	No IPR available	PANTHER	PTHR13343:SF24	OS07G0573800 PROTEIN	coord: 303..357
None	No IPR available	PANTHER	PTHR13343:SF24	OS07G0573800 PROTEIN	coord: 30..276
None	No IPR available	PANTHER	PTHR13343	CREG1 PROTEIN	coord: 303..357
None	No IPR available	SUPERFAMILY	50475	FMN-binding split barrel	coord: 93..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G05600.2	Clc04G05600.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042167	heme catabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0020037	heme binding
molecular_function	GO:0042803	protein homodimerization activity