Clc04G04810 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G04810
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Replication factor C subunit 3
Location	ClcChr04: 17208501 .. 17214080 (+)
RNA-Seq Expression	Clc04G04810
Synteny	Clc04G04810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATTTAAAAAGGGTATTTTTGAAATGCTTTAGAAAATTAGGACCAATATGGTAATTTTGAAAAGTATTGGGGTATTTTATGTATTTTTTTATAGTTTGAGAGTCACAGCCTACTGCTGGGGCTCTCGCTTCCTCTTCTCATCAGTCATCAGTTCTGTTTCTTTTTCCCGCCATTTCAAGCCTCGCCTAAGCCTTTGCTCTCTCCTTCACACACACTTCTTTTTTCGCTTTGTCACGATCTTAAATCTCCAAACACCGAAGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTTAAGAAATTGGTAACCAAATTTTGTTGTTACTTTTTCCTTCCATTCCTTATTTCAGACTTCAATTTGGCGTTTTTGATTTGGGTTTTCCGTAAATCTTCTTCTAGGTTACAGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGAGCCAGTGCGGATAAGGTATTGCCTCTATTCTGTTTCTTTTTCTTTTTTAATTCTGGGAAATTGTGTGATTGTTTTTTTTTTTTTTTTTTGTTTTCTCTGACTGTTTGTTGCGTTTGATCCTCTCTTGCGTTTTGCTGCAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGTAAGTTTTGGTTGGTTGGCCTTCTTGGGTAACCATTTGATTTTTTTCTTTTTTAAGCATATTTTTGCTCACATTTTTTACCATAATTTTCATCTTTCTTAAGTAAAATAGTTTAATTCTTAGCTATATTAAAAGAAAAAAGTTCTAGAAAATTGACTTGGTTTTTGAAAATATTGGTAGAGTAGATAACTGAGCAAGAAATTTGGAGGTGGAAGGAGTGTATAGGCTTAATTTTCATACCAAAAACCAAATGGTTACCAAATATATACTTAGGGATGCCATCTCTTTCCACATGCGTTGGAAAGCAATTGAATTCAGTTTGTGGGGAAAAGGATTTTTAATTATCAGTTTATATTATTACTACTTCAGAATGTTATAGAGTAGCATAATAATTTAACTAGTTGAAGCTGTTGTTTGGCTGTTTAACTTAAAAATTCTCATCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCTATGTTGGAAAGCAATTGAATTCAGATTGTAGGGAAAAAGATTTTTAATTATCAGTTTATATGATTACTACTTCAGAATGTTATAGAGTAGCATAATAATTTAACTAGTTGAAGCTGTTGTTTGGCTGTTTAACTTAAAAGTTCTCATAATCTCTCTCTCTCTCTCTCTCTGTTTCTATGCCCTTCCTTTTTGGTTTTCCTTCCCAGGCTGGAGCTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCATGTTGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGACTCCAAAGGGAAAAGGGGGCATAAAGGTGTTGATTCTTCCCCATCCCCTCCAACCACATTTATAAGTTGTTCATGCTTGAGAGCTTAGTGATTCATTGTGGTTAATGCTTAAAAATGTTAATGAGCCACCACCAAACAAGTATAAAGTAGTTTTATTACTTGTTTGGCAGCTTCTTTTACCAGTATGCTTGAATACTCAATACTTTATATCTGTATAAAGATATTAAGATTTTTGTGCTTTTTATATATCAGTGTTGGTTCTAAATGACGTCGACAAACTATCAAGAGAGGCCCAACACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGGTCAGGAGAGAAAATGTTTTCTTTTTTGCAATGTCTTATTTCTTTTTGTTCTATGAATTTGAGTAAACTAAATGATTGACTGGAAGAATGTAATTATAAAATGTCATATCGCTAACCAATGTGATAAATTTTACCCGTATTCAACTTGTTTTCTGACCAAGAACTTGGAGTCAGACAACCATTGAAAACTGATGTCATAATGATCTAATTATTCTTGAATATGTTATTCTAGCAGTCTATGGGCAACAATTTTCTGGGTGTCTAACTTAATATTTAGATGTAAGTAGGTGAAAGAATACCTTTTCAAGTACTTACCTTCTATGGGTACCAATGCTGCTGTCAGAAAACCTAACAGTTCACTGGCAATTTTTTTGGGGATAAAAAACAATAGTTCATTGCCATTTTCATTTTTCATTTTCTGCTTAAACTATTTAAAGCCTTTTCTAGTGATGCCTATATTCAGTAGCTTCCATCTCTAGTTGTCATGTAATATTTTCTACCTATTTGTATACTCAAAGGTTTCAGAATAGAAGGAAAATATACGTTAGTGGATTAAGACTTCTGATTTGCAAGTTGTGGACACTGGAAAGCCAATTTCCTGTTTCATGGCATGGTTTTACTTTTACCTGAAAACTTAGTCTTCAAAAGTATTTGTTGATAGTTTATACTTTTTATTGTAGTCATTTGGACCTAAAAGCTGTTAAAAAAGTTACGTCCTTTCACCAGATTGTCAGGGTACTTGAGTTCATTGGCAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAATCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTTAGTCTCCACTAGGCTTCTTACAGATCTAAGCTTCTCTCTCAGTTCTTATCATGAAAAATTACCTTGGAAAACAATCTTTAAGGATTGGGACTGAGCTGTTTATTTATTTTATTTTTTGGGTTAGGTATCCTTTTGTCAGTACCCAGGCAATTCCACCGATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGGTACGTCTTTCATGTGGTTTTCTTTTTTTTTTTTGTTGTATTCTGTACTATAACATACATCTCAATATCAAATATTTGTGGCTTCTCTTCATATACATCAGTTGGGTACTTCTCTAACACACCATTGGTCATTCAAACTGCTTTCGATTCTTAAAATATGCTGCCCAACTATTCTTCATGAACAAATAGTTACACAAGGATAAACAAACCTTAAACTTCTATGGATGGTACCTCGATTATGATGATCTTTGTCTGGTTGGATGAAGGTGGTACAGTTTCCTGTTCATCATTAGAACTTAGAAGTACCTGTTTGATACTTCACCTTTTTTTGGTCATCAATCTAATGAATGAAGATTCCTACTCCTTATTCAACATGTCCTCGATCTTTGTACGGAAGCAATGAGGATCCTAATCATCTTTGGTGGTCTTGTGATTATGATTCGGCAGTCCAGACTTTGTTTATTTCAGTCATTTGGCCTCAGCGTGGTTGGGCCTAGAGTTTGGCATGATCACAAGAGCCCTTGCTTCAACTCTCCTTTAGTGAAAAAAGGTGGTTTTTGTGGATAACTGGCATTTGTGCTTTGTTATGTGGTCTTTGGGGTGAGAAATGATATACATATACACACACACATATATATTGGAGGAGTGGAGCGTTCTAGGGAGGAAGTTTGGCGTTCCACACTTCCCTTTGGACTTCTTTGTGTAAGGACTTTTGAATTATCCGTTAGGTATTATCTTGTTTGATTGGAGCCATTTTCTTTAGTGTGGCGCATTTTGGGGACTTTTTTTTCTTCTTGCTATGTCTCTTGTATTTTTTTATTTTTTTTCTTAATAAAAGTTTGGTTTTGATAGGAAAAACACATGTCCTTGACTTTTGTTTTTTCGAGCAGAGAGAAAACGAGAAAACTGTAGAATTGTGAGAAATTGCAATTGTCTAGTAGAAACATATATGGAGAGAACTATTGACTTTTCAAATTGTCATGTTCTTTTGTTATTAACTAGTTGGAGAATTATTCGAAGTCTGAAATAAATGGACTTCTTTTTTGTGATACAGACTATTCCAGGTTCGTGGGAAGGTATATGAGCTACTGGTTAATTGTATCCCACCGGAGATCATATTGAAGGTAATAATTCTTCCCCAATTTCGATTGATTTTTTCTGTTTTATTGTGAGATTCATATTATCTACTTACTCAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGTAAGTTGAAATTTGATCTGTCAATTTGTTTACATTCCCTTTTTATTGTTCAATATCAGAACTTTTTCTGGGAATTGGAATATCAATTATTTACTTTTCAGCACGCCTCAATTTTCTACTTTGTCTAACATGCATTAAATAAATACCAAAAAGTGAAACTGGTTGTGTACTTCACTTCATTTCTAATTTTCTATCCCATAGATAATTTGTTACGTCTGGCCAAATTACCATCACAATCACGTAAGAAGAATCATCTACTCACTTAAGTTTGTATAATTTTGTGAACACTGTAGTGCGTTATACATCTACATGTATTGATTCACCAATATGATATCACAGATGAAACATGGCTGCAGAGACTTTCACCTTTGTTCAGTTTCATTTCTCATCTTTGGTTAAATCTTTTTCCAGGAACACAGGATGCGCCTTGGACAGAAAGCCATCTTCCACATTGAAGGTAAATGTATTTGGTATACAAATAAGCAGAGTAACTGTTCTTACACGAAACTATAATGCCTATGTTCTTCTTTCTTCCTCTGGCTCTATTAGTTAGCCACGACCTTTATTTCATCGTAAGAACCTTGTATCCATCAAGTAATGGATAATGTAATCCAATGGAATGGTTTGAAAATGTCCTGCTATCCATGTTCAATTGAAAAAAGATTGTTTCATGCAACTTTAGAGTAATGAGTTTTGAGAAATTGATAGTACATGTTTTTATAATCATGAATTTGACTCTTAATGCTCTGACATTTGTGAAAAGATTTCCTGTTCTCAAGTTCTTTAGGTTCTAACGTTCTAATAGACTCATCTGGAAGAAGCCAAAATTCTCTAGTTTTGAAGTACTCTTTTGGTCTGATAATGCAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAAGGAGAAGAAAAGTAGACCTTGAAGTTAGGCTGTCTCAGTTCATTCAAGAAATGCCCTTGTAAGTTCATAGATTTGGTGTGACGTTGAATCAAGTCAATCTGGTGTATTTAGCATATCTTCTTTGGTCAGTTTTGTATGGTACTCTAGTTGTTCATCCTCCTTTAGCTTTTTTCTATTAGGGAACTTTAAGCTGCACTTTGAGGGATTTGAAAACTGAATCTAACTTGGCCGAAAAAATGGAAAAATTCGAGTCATTTTGTAGCACTTTCTACTGGAGTTTCCCCTCTTAACTAAAACGAACAATAATAGAA

mRNA sequence

CAAAATTTAAAAAGGGTATTTTTGAAATGCTTTAGAAAATTAGGACCAATATGGTAATTTTGAAAAGTATTGGGGTATTTTATGTATTTTTTTATAGTTTGAGAGTCACAGCCTACTGCTGGGGCTCTCGCTTCCTCTTCTCATCAGTCATCAGTTCTGTTTCTTTTTCCCGCCATTTCAAGCCTCGCCTAAGCCTTTGCTCTCTCCTTCACACACACTTCTTTTTTCGCTTTGTCACGATCTTAAATCTCCAAACACCGAAGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTTAAGAAATTGGTTACAGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGAGCCAGTGCGGATAAGGCTGGAGCTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCATGTTGAGCTCACTCCCAGCGATGCAGTGTTGGTTCTAAATGACGTCGACAAACTATCAAGAGAGGCCCAACACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGCTTCCATCTCTAGTTGTCATTCATTTGGACCTAAAAGCTGTTAAAAAAGTTACGTCCTTTCACCAGATTGTCAGGGTACTTGAGTTCATTGGCAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAATCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTCAGTACCCAGGCAATTCCACCGATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGGTACGTCTTTCATGTTCGTGGGAAGGTATATGAGCTACTGGTTAATTGTATCCCACCGGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGCCTTGGACAGAAAGCCATCTTCCACATTGAAGGTAAATGTATTTGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAAGGAGAAGAAAAGTAGACCTTGAAGTTAGGCTGTCTCAGTTCATTCAAGAAATGCCCTTGTAAGTTCATAGATTTGGTGTGACGTTGAATCAAGTCAATCTGGTGTATTTAGCATATCTTCTTTGGTCAGTTTTGTATGGTACTCTAGTTGTTCATCCTCCTTTAGCTTTTTTCTATTAGGGAACTTTAAGCTGCACTTTGAGGGATTTGAAAACTGAATCTAACTTGGCCGAAAAAATGGAAAAATTCGAGTCATTTTGTAGCACTTTCTACTGGAGTTTCCCCTCTTAACTAAAACGAACAATAATAGAA

Coding sequence (CDS)

ATGGTAATTTTGAAAAGTATTGGGGTATTTTATGTATTTTTTTATAGTTTGAGAGTCACAGCCTACTGCTGGGGCTCTCGCTTCCTCTTCTCATCAGTCATCAGTTCTGTTTCTTTTTCCCGCCATTTCAAGCCTCGCCTAAGCCTTTGCTCTCTCCTTCACACACACTTCTTTTTTCGCTTTGTCACGATCTTAAATCTCCAAACACCGAAGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTTAAGAAATTGGTTACAGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGAGCCAGTGCGGATAAGGCTGGAGCTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCATGTTGAGCTCACTCCCAGCGATGCAGTGTTGGTTCTAAATGACGTCGACAAACTATCAAGAGAGGCCCAACACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGCTTCCATCTCTAGTTGTCATTCATTTGGACCTAAAAGCTGTTAAAAAAGTTACGTCCTTTCACCAGATTGTCAGGGTACTTGAGTTCATTGGCAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAATCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTCAGTACCCAGGCAATTCCACCGATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGGTACGTCTTTCATGTTCGTGGGAAGGTATATGAGCTACTGGTTAATTGTATCCCACCGGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGCCTTGGACAGAAAGCCATCTTCCACATTGAAGGTAAATGTATTTGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAAGGAGAAGAAAAGTAGACCTTGAAGTTAGGCTGTCTCAGTTCATTCAAGAAATGCCCTTGTAA

Protein sequence

MVILKSIGVFYVFFYSLRVTAYCWGSRFLFSSVISSVSFSRHFKPRLSLCSLLHTHFFFRFVTILNLQTPKKMLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASADKAGARTIDIELTTLSSTNHVELTPSDAVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVRGKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEGKCICFCGEVHEHIQDFPHFNIRLRRRKVDLEVRLSQFIQEMPL

Homology

[Close]

BLAST of Clc04G04810 vs. NCBI nr
Match: XP_004144654.1 (replication factor C subunit 3 [Cucumis sativus] >KGN54900.1 hypothetical protein Csa_012378 [Cucumis sativus])

HSP 1 Score: 523.1 bits (1346), Expect = 2.3e-144
Identity = 282/358 (78.77%), Postives = 287/358 (80.17%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
            SADK           AG RTIDIELTTLSS NHVELTPSDA                  
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPTEE                      QI +VLE+IGKKEGLQLPSGFASRIA
Sbjct: 181 CLNVRINGPTEE----------------------QIFKVLEYIGKKEGLQLPSGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKSNRSLRRAILSFETCRVQQYPFVS QAIPPMDWEEYITEIAS+IMKEQSPKR +F VR
Sbjct: 241 EKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYITEIASEIMKEQSPKR-LFQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Clc04G04810 vs. NCBI nr
Match: XP_022154548.1 (replication factor C subunit 3 [Momordica charantia] >XP_022154549.1 replication factor C subunit 3 [Momordica charantia])

HSP 1 Score: 522.7 bits (1345), Expect = 3.0e-144
Identity = 281/358 (78.49%), Postives = 288/358 (80.45%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQ+TVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQVTVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
           ASA+K           AG RTIDIELTTLSSTNHVELTPSDA                  
Sbjct: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQDIIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPTEE                      QIV+VLE IGKKEGLQLP GFASRIA
Sbjct: 181 CLNVRINGPTEE----------------------QIVKVLELIGKKEGLQLPPGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKSNRSLRRAILSFETCRVQQYPF S QAIPPMDWEEYI+EIASDIMKEQSPKR +F VR
Sbjct: 241 EKSNRSLRRAILSFETCRVQQYPFASNQAIPPMDWEEYISEIASDIMKEQSPKR-LFQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAEL+HEVCHWAAYYEHRMRLGQKAIFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELQHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Clc04G04810 vs. NCBI nr
Match: XP_008442036.1 (PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442038.1 PREDICTED: replication factor C subunit 3 [Cucumis melo] >KAA0041829.1 replication factor C subunit 3 [Cucumis melo var. makuwa] >TYK05351.1 replication factor C subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 3.0e-144
Identity = 282/358 (78.77%), Postives = 287/358 (80.17%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
            SA+K           AG RTIDIELTTLSS NHVELTPSDA                  
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPTEE                      QIV+VLEFIGKKEGLQLPSGFASRIA
Sbjct: 181 CLNVRINGPTEE----------------------QIVKVLEFIGKKEGLQLPSGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKS+RSLRRAILSFETCRVQQYPFV  QAIPPMDWEEYITEIASDIMKEQSPKR +F VR
Sbjct: 241 EKSSRSLRRAILSFETCRVQQYPFVGNQAIPPMDWEEYITEIASDIMKEQSPKR-LFQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Clc04G04810 vs. NCBI nr
Match: XP_022950838.1 (replication factor C subunit 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 519.6 bits (1337), Expect = 2.6e-143
Identity = 277/358 (77.37%), Postives = 290/358 (81.01%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLF+GPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
           ASA+K           AG R ++IELTT+SSTNHVELTPSDA                  
Sbjct: 61  ASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPT++                      QIV+VLEFIGKKEGLQLPSGFASRIA
Sbjct: 181 CLNVRINGPTDD----------------------QIVKVLEFIGKKEGLQLPSGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKSNRSLRRAILSFETCRVQQYPFVS QAIPPMDWEEYI+EIASDIMKEQSPKR ++ VR
Sbjct: 241 EKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKR-LYQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQK+IFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIE 335

[Close]

BLAST of Clc04G04810 vs. NCBI nr
Match: KAG6603461.1 (Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 519.6 bits (1337), Expect = 2.6e-143
Identity = 277/358 (77.37%), Postives = 290/358 (81.01%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLF+GPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
           ASA+K           AG R ++IELTT+SSTNHVELTPSDA                  
Sbjct: 61  ASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPT++                      QIV+VLEFIGKKEGLQLPSGFASRIA
Sbjct: 181 CLNVRINGPTDD----------------------QIVKVLEFIGKKEGLQLPSGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKSNRSLRRAILSFETCRVQQYPFVS QAIPPMDWEEYI+EIASDIMKEQSPKR ++ VR
Sbjct: 241 EKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKR-LYQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQK+IFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIE 335

[Close]

BLAST of Clc04G04810 vs. ExPASy Swiss-Prot
Match: Q8VXX4 (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 3.0e-131
Identity = 246/358 (68.72%), Postives = 277/358 (77.37%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPK+LD++ VH+D+AQ LKKLV+EQDCPHLLFYGPSGSGKKTL+MAL++Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
           ASA+K           AG+RTID+ELTTLSSTNHVELTPSDA                  
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLN+VDKLSREAQHSLRRTMEKYSS CRLILCCNSSS+VTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRIN P++E                      +IV+VLEF+ KKE LQLP GFA+RIA
Sbjct: 181 CLNVRINAPSQE----------------------EIVKVLEFVAKKESLQLPQGFAARIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKSNRSLRRAILS ETCRVQ YPF   Q I PMDWEEY+ EIA+D+MKEQSPK+ +F VR
Sbjct: 241 EKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEYVAEIATDMMKEQSPKK-LFQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GKVYELLVNCIPPE+ILKRLL+ELLKKLD+ELK EVCHWAAYYEHRMRLGQKAIFHIE
Sbjct: 301 GKVYELLVNCIPPEVILKRLLHELLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Clc04G04810 vs. ExPASy Swiss-Prot
Match: Q852K3 (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 5.6e-125
Identity = 236/358 (65.92%), Postives = 268/358 (74.86%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLD++TVH  VAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALI+QMFG
Sbjct: 1   MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
           A ADK            G+R I+IEL  LSS +HVE+ PSDA                  
Sbjct: 61  AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLN+VDKLSREAQHSLRRTMEKYS+ CRLILCCNSSS+VTEA+RSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVR+N P+E+                      QIV+VLEFIGKKE LQLP GFA+RIA
Sbjct: 181 CLNVRVNAPSED----------------------QIVQVLEFIGKKENLQLPFGFAARIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
            +SNR+LRRAIL FETC+VQQYPF S Q  PP+DWE+Y++EIA+DIMKEQSPKR +F VR
Sbjct: 241 AQSNRNLRRAILFFETCKVQQYPFTSNQVAPPLDWEQYVSEIAADIMKEQSPKR-LFAVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
            K YELLVNCIPPE ILK+LL ELLKKLD++LKHE+CHWAA+YEH+MRLG KAIFH+E
Sbjct: 301 QKFYELLVNCIPPESILKKLLAELLKKLDSDLKHEICHWAAHYEHKMRLGSKAIFHLE 335

[Close]

BLAST of Clc04G04810 vs. ExPASy Swiss-Prot
Match: P40938 (Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2)

HSP 1 Score: 299.3 bits (765), Expect = 7.1e-80
Identity = 168/370 (45.41%), Postives = 224/370 (60.54%), Query Frame = 0


Query: 74  LWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA 133
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 134 SADKAGA--RTI------DIELTTLSSTNHVELTPSDA---------------------- 193
             +K     +TI       IE++T++S  H+E+ PSDA                      
Sbjct: 63  GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122

Query: 194 --------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNV 253
                   V++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSRCL V
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182

Query: 254 RINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIAEKSN 313
           R+  P                      S   I  VL  + KKEGL LPS  A R+AEKS 
Sbjct: 183 RVPAP----------------------SIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSC 242

Query: 314 RSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVRGKVY 373
           R+LR+A+L  E CRVQQYPF + Q IP  DWE Y+ E A+ I+ +Q+P+R +  VRG++Y
Sbjct: 243 RNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQR-LLEVRGRLY 302

Query: 374 ELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEGKCICF 406
           ELL +CIPPEII+K LL ELL   D +LK EV   AAYYEHR++LG KAI+H+E     F
Sbjct: 303 ELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKF 349

[Close]

BLAST of Clc04G04810 vs. ExPASy Swiss-Prot
Match: Q2TBV1 (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 9.3e-80
Identity = 168/370 (45.41%), Postives = 223/370 (60.27%), Query Frame = 0


Query: 74  LWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA 133
           LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 134 SADKAGA--RTI------DIELTTLSSTNHVELTPSDA---------------------- 193
             +K     +TI       IE++T++S  H+E+ PSDA                      
Sbjct: 63  GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122

Query: 194 --------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNV 253
                   V++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSRCL V
Sbjct: 123 TSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182

Query: 254 RINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIAEKSN 313
           R+  P                      S   I  VL  + KKEGL LP   A R+AEKS 
Sbjct: 183 RVPAP----------------------SIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSC 242

Query: 314 RSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVRGKVY 373
           R+LR+A+L  E CRVQQYPF + Q IP  DWE Y+ E A+ I+ +Q+P+R +  VRG++Y
Sbjct: 243 RNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQR-LLEVRGRLY 302

Query: 374 ELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEGKCICF 406
           ELL +CIPPEII+K LL ELL   D +LK EV   AAYYEHR++LG KAI+H+E     F
Sbjct: 303 ELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKF 349

[Close]

BLAST of Clc04G04810 vs. ExPASy Swiss-Prot
Match: Q8R323 (Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.7e-79
Identity = 167/370 (45.14%), Postives = 223/370 (60.27%), Query Frame = 0


Query: 74  LWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA 133
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 134 SADKAGA--RTI------DIELTTLSSTNHVELTPSDA---------------------- 193
             +K     +TI       IE++T++S  H+E+ PSDA                      
Sbjct: 63  GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122

Query: 194 --------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNV 253
                   V++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSRCL V
Sbjct: 123 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182

Query: 254 RINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIAEKSN 313
           R+  P                      S   I  VL  + +KEGL LPS  A R+AEKS 
Sbjct: 183 RVPAP----------------------SIEDICSVLSTVCRKEGLALPSTLARRLAEKSC 242

Query: 314 RSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVRGKVY 373
           R+LR+A+L  E CRVQQYPF   Q IP  DWE Y+ E A+ I+ +Q+P+R +  VRG++Y
Sbjct: 243 RNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQR-LLEVRGRLY 302

Query: 374 ELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEGKCICF 406
           ELL +CIPPEII+K LL ELL   D +LK EV   AAYYEHR++LG KAI+H+E     F
Sbjct: 303 ELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKF 349

[Close]

BLAST of Clc04G04810 vs. ExPASy TrEMBL
Match: A0A0A0KYY3 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G579870 PE=4 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 1.1e-144
Identity = 282/358 (78.77%), Postives = 287/358 (80.17%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
            SADK           AG RTIDIELTTLSS NHVELTPSDA                  
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPTEE                      QI +VLE+IGKKEGLQLPSGFASRIA
Sbjct: 181 CLNVRINGPTEE----------------------QIFKVLEYIGKKEGLQLPSGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKSNRSLRRAILSFETCRVQQYPFVS QAIPPMDWEEYITEIAS+IMKEQSPKR +F VR
Sbjct: 241 EKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYITEIASEIMKEQSPKR-LFQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Clc04G04810 vs. ExPASy TrEMBL
Match: A0A1S3B4A5 (replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 1.5e-144
Identity = 282/358 (78.77%), Postives = 287/358 (80.17%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
            SA+K           AG RTIDIELTTLSS NHVELTPSDA                  
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPTEE                      QIV+VLEFIGKKEGLQLPSGFASRIA
Sbjct: 181 CLNVRINGPTEE----------------------QIVKVLEFIGKKEGLQLPSGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKS+RSLRRAILSFETCRVQQYPFV  QAIPPMDWEEYITEIASDIMKEQSPKR +F VR
Sbjct: 241 EKSSRSLRRAILSFETCRVQQYPFVGNQAIPPMDWEEYITEIASDIMKEQSPKR-LFQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Clc04G04810 vs. ExPASy TrEMBL
Match: A0A6J1DMG0 (replication factor C subunit 3 OS=Momordica charantia OX=3673 GN=LOC111021793 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 1.5e-144
Identity = 281/358 (78.49%), Postives = 288/358 (80.45%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQ+TVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQVTVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
           ASA+K           AG RTIDIELTTLSSTNHVELTPSDA                  
Sbjct: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQDIIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPTEE                      QIV+VLE IGKKEGLQLP GFASRIA
Sbjct: 181 CLNVRINGPTEE----------------------QIVKVLELIGKKEGLQLPPGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKSNRSLRRAILSFETCRVQQYPF S QAIPPMDWEEYI+EIASDIMKEQSPKR +F VR
Sbjct: 241 EKSNRSLRRAILSFETCRVQQYPFASNQAIPPMDWEEYISEIASDIMKEQSPKR-LFQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAEL+HEVCHWAAYYEHRMRLGQKAIFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELQHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Clc04G04810 vs. ExPASy TrEMBL
Match: A0A5D3C0B6 (Replication factor C subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00180 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 1.5e-144
Identity = 282/358 (78.77%), Postives = 287/358 (80.17%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
            SA+K           AG RTIDIELTTLSS NHVELTPSDA                  
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPTEE                      QIV+VLEFIGKKEGLQLPSGFASRIA
Sbjct: 181 CLNVRINGPTEE----------------------QIVKVLEFIGKKEGLQLPSGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKS+RSLRRAILSFETCRVQQYPFV  QAIPPMDWEEYITEIASDIMKEQSPKR +F VR
Sbjct: 241 EKSSRSLRRAILSFETCRVQQYPFVGNQAIPPMDWEEYITEIASDIMKEQSPKR-LFQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Clc04G04810 vs. ExPASy TrEMBL
Match: A0A6J1GG01 (replication factor C subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453820 PE=4 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 1.2e-143
Identity = 277/358 (77.37%), Postives = 290/358 (81.01%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLF+GPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
           ASA+K           AG R ++IELTT+SSTNHVELTPSDA                  
Sbjct: 61  ASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRINGPT++                      QIV+VLEFIGKKEGLQLPSGFASRIA
Sbjct: 181 CLNVRINGPTDD----------------------QIVKVLEFIGKKEGLQLPSGFASRIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKSNRSLRRAILSFETCRVQQYPFVS QAIPPMDWEEYI+EIASDIMKEQSPKR ++ VR
Sbjct: 241 EKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKR-LYQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GK+YELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQK+IFHIE
Sbjct: 301 GKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIE 335

[Close]

BLAST of Clc04G04810 vs. TAIR 10
Match: AT5G27740.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 469.9 bits (1208), Expect = 2.2e-132
Identity = 246/358 (68.72%), Postives = 277/358 (77.37%), Query Frame = 0


Query: 73  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 132
           MLWVDKYRPK+LD++ VH+D+AQ LKKLV+EQDCPHLLFYGPSGSGKKTL+MAL++Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 133 ASADK-----------AGARTIDIELTTLSSTNHVELTPSDA------------------ 192
           ASA+K           AG+RTID+ELTTLSSTNHVELTPSDA                  
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 193 ------------VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 252
                       VLVLN+VDKLSREAQHSLRRTMEKYSS CRLILCCNSSS+VTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 253 CLNVRINGPTEEQLPSLVVIHLDLKAVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIA 312
           CLNVRIN P++E                      +IV+VLEF+ KKE LQLP GFA+RIA
Sbjct: 181 CLNVRINAPSQE----------------------EIVKVLEFVAKKESLQLPQGFAARIA 240

Query: 313 EKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRYVFHVR 372
           EKSNRSLRRAILS ETCRVQ YPF   Q I PMDWEEY+ EIA+D+MKEQSPK+ +F VR
Sbjct: 241 EKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEYVAEIATDMMKEQSPKK-LFQVR 300

Query: 373 GKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIE 390
           GKVYELLVNCIPPE+ILKRLL+ELLKKLD+ELK EVCHWAAYYEHRMRLGQKAIFHIE
Sbjct: 301 GKVYELLVNCIPPEVILKRLLHELLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Clc04G04810 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-25
Identity = 70/219 (31.96%), Postives = 110/219 (50.23%), Query Frame = 0


Query: 75  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA- 134
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGVL 70

Query: 135 ---SADKAGARTIDIELTTLSS----TNHVEL---TPSDAVLVLNDVDKLSREAQHSLRR 194
              ++D  G   +  ++   ++    +NH +     PS  +++L++ D ++ +AQ++LRR
Sbjct: 71  ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRR 130

Query: 195 TMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQLPSLVVIHLDLKAVKKVTS 254
           TME YS   R    CN  SR+ E + SRC   R   P  E++ S  ++H           
Sbjct: 131 TMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PLSEEVMSNRILH----------- 190

Query: 255 FHQIVRVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAI 283
                     I  +EGL L     S ++  S   LRRAI
Sbjct: 191 ----------ICNEEGLSLDGEALSTLSSISQGDLRRAI 207

[Close]

BLAST of Clc04G04810 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-24
Identity = 70/226 (30.97%), Postives = 110/226 (48.67%), Query Frame = 0


Query: 75  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA- 134
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 135 ----------SADKAGARTIDIELTTLSS----TNHVEL---TPSDAVLVLNDVDKLSRE 194
                     ++D  G   +  ++   ++    +NH +     PS  +++L++ D ++ +
Sbjct: 71  LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 130

Query: 195 AQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQLPSLVVIHLDLK 254
           AQ++LRRTME YS   R    CN  SR+ E + SRC   R   P  E++ S  ++H    
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PLSEEVMSNRILH---- 190

Query: 255 AVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAI 283
                            I  +EGL L     S ++  S   LRRAI
Sbjct: 191 -----------------ICNEEGLSLDGEALSTLSSISQGDLRRAI 214

[Close]

BLAST of Clc04G04810 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-24
Identity = 70/226 (30.97%), Postives = 110/226 (48.67%), Query Frame = 0


Query: 75  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA- 134
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 135 ----------SADKAGARTIDIELTTLSS----TNHVEL---TPSDAVLVLNDVDKLSRE 194
                     ++D  G   +  ++   ++    +NH +     PS  +++L++ D ++ +
Sbjct: 71  LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 130

Query: 195 AQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQLPSLVVIHLDLK 254
           AQ++LRRTME YS   R    CN  SR+ E + SRC   R   P  E++ S  ++H    
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PLSEEVMSNRILH---- 190

Query: 255 AVKKVTSFHQIVRVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAI 283
                            I  +EGL L     S ++  S   LRRAI
Sbjct: 191 -----------------ICNEEGLSLDGEALSTLSSISQGDLRRAI 214

[Close]

BLAST of Clc04G04810 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-21
Identity = 51/153 (33.33%), Postives = 87/153 (56.86%), Query Frame = 0


Query: 75  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA- 134
           WV+KYRP++LD +  H+D+   + +L  E   PHLL YGP G+GK + ++A+ R+++G  
Sbjct: 41  WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPK 100

Query: 135 ---------SADKAGARTIDIELTTLSSTNHVELTPSDAVLV-LNDVDKLSREAQHSLRR 194
                    ++D  G   +  ++   +ST    L  S   LV L++ D ++++AQ +LRR
Sbjct: 101 YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRR 160

Query: 195 TMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVR 217
            +EKY+   R  L  N  +++  A++SRC   R
Sbjct: 161 VIEKYTKSTRFALIGNHVNKIIPALQSRCTRFR 193

The following BLAST results are available for this feature:

BLAST of Clc04G04810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144654.1	2.3e-144	78.77	replication factor C subunit 3 [Cucumis sativus] >KGN54900.1 hypothetical protei...	[more]
XP_022154548.1	3.0e-144	78.49	replication factor C subunit 3 [Momordica charantia] >XP_022154549.1 replication...	[more]
XP_008442036.1	3.0e-144	78.77	PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICT...	[more]
XP_022950838.1	2.6e-143	77.37	replication factor C subunit 3 isoform X2 [Cucurbita moschata]	[more]
KAG6603461.1	2.6e-143	77.37	Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc04G04810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VXX4	3.0e-131	68.72	Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1	[more]
Q852K3	5.6e-125	65.92	Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 ...	[more]
P40938	7.1e-80	45.41	Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2	[more]
Q2TBV1	9.3e-80	45.41	Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1	[more]
Q8R323	2.7e-79	45.14	Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1	[more]

BLAST of Clc04G04810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYY3	1.1e-144	78.77	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G579870 PE=4 SV...	[more]
A0A1S3B4A5	1.5e-144	78.77	replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1	[more]
A0A6J1DMG0	1.5e-144	78.49	replication factor C subunit 3 OS=Momordica charantia OX=3673 GN=LOC111021793 PE...	[more]
A0A5D3C0B6	1.5e-144	78.77	Replication factor C subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1GG01	1.2e-143	77.37	replication factor C subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Clc04G04810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27740.1	2.2e-132	68.72	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	1.8e-25	31.96	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.1	1.5e-24	30.97	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	1.5e-24	30.97	ATPase family associated with various cellular activities (AAA)	[more]
AT1G77470.1	1.2e-21	33.33	replication factor C subunit 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 105..223 e-value: 0.01 score: 25.1
None	No IPR available	GENE3D	1.10.8.60		coord: 244..303 e-value: 4.7E-13 score: 50.5
None	No IPR available	GENE3D	1.20.272.10		coord: 305..396 e-value: 3.4E-30 score: 106.1
None	No IPR available	PFAM	PF03215	Rad17	coord: 72..128 e-value: 8.1E-7 score: 29.1
None	No IPR available	PFAM	PF13177	DNA_pol3_delta2	coord: 161..218 e-value: 2.3E-6 score: 27.7
None	No IPR available	PANTHER	PTHR11669:SF1	REPLICATION FACTOR C SUBUNIT 3	coord: 74..164 coord: 164..392
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 74..164 coord: 164..392
None	No IPR available	CDD	cd00009	AAA	coord: 91..212 e-value: 2.2237E-8 score: 50.9927
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 72..163 e-value: 7.6E-22 score: 80.2 coord: 164..220 e-value: 7.8E-15 score: 57.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 73..290
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 304..392

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G04810.2	Clc04G04810.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity