Clc04G04660 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G04660
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionATP synthase subunit alpha
LocationClcChr04: 16871016 .. 16872867 (+)
RNA-Seq ExpressionClc04G04660
SyntenyClc04G04660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGATCAGAACTTGGCTCGGATAGTAAAACTCTTTGGAATGCAAGAAAAGCTTCAGAAAGCCCAACAAGAATCAACAAAGGAAAAGTTTTCCCTCAATGAAGGCCATAGTGAATCAATAAATCCTGAGCAAAAAGATCTTCCTCCAGGATTATAGTAAGTCAAAATAACGAAGGGATTGCAAAACGAAGGCCAATGGAAGGTATGGGCATGCTTCTTCCTCTTATCGCAATAGCCGAGGCCAAAATTGAACCAAAGGATCCAACACCAAAATCTTGATCAAAGATACATTAGAAACATGTTTGTGGAATTTGCTCGAAAAAAAAAAAAAAAAGCTACAGAAAGAATCCAAGGCTAACCTACAAATTGAATTTCAAGCAAAATCCCATCTTGAGTAGGGGAAGAGAACGGTAATTTCATTGCCCAACAAAGTGGTGGATGATGGATGGCCAAACAAGACCCAAAATGTGAAGCAACAAAATTCCTTATGGCACCGTGTTGGTTGTTTATGGCCCATATTTTGCCATTCTCCTAACCAAGATATACATAAAAAATGTAAATGGATGTGCATTATGAGGCCCATGCCCAAGTGGTATGACCCGACCTCAAATTTTGAGTCTGAGGCTGACCTCATGGTGACAGAACCTTTTTTACCCCATTCACATACATTATGCAGGCCCACGCTCAAGTGGAATGGCCTAACCTCATATTTTGAGTTTGAGGCTAAGGTCGACCTGCTGATAACATAGCCCGTTTGCCCCATTCACATGCATTATGAGGCCCACGCTTGAGTGGTATGGCCCAGCCTCGAATTTCGGGTTTGAGGCCAAGGCTGACCTCATGGTAACAGAGCCTTTTTGCCCTATAAAGGTGCATTATGAGGTCCACACGCCGAGTGGTATGGCCCAACCTCAGATTCCGGGTCTGAGGCTGAGGCTGACCTCGTGGTAATGGAGCCCTTTTCCTCCATTTACAAGGTTTTCTTACAAAATCTAAAGTGAGTTATGATGTCTGAAAAGCACCTAAAATATGCTTTTATTACCTTTGACTTAGGGATGTTTTTTTATTAGATTTAATGTGTTTGCTAGTTGTTTTCAGGTAATTAAGAAGAACTTAAGTGTCTAAGGCCAAATGAACCAAACCGAGCCAAAACCAAGTAAAAAACAAAAGTAAATATGGGAAAACCCTAGACACAGGGCAGTGCAGCCGAGAGCGTCGCTGCGCTACCTTCTATACTCCACACCCCGAGAGTTTAAAACTTGGGACAGCAGGAGAGCACAGCGACGCTCTGACTAAATTTCCTAGACCGTAGCTACGCTCTCTTAGTGTGCAGCTACGTTGTCTTTCCAAAAAATAAAAATTTGCAATTTTGGAAAGTTCTTCTTGAGCAAGTATCTGATTTTCTATAAATTGGGAGGTCCTAAGCCGACTTCTACATCAAGAATTGGAGAATTAAAGACCTAGAGTGGGTTTAGTGCAAGATATGAAGATTCCATGGTGTCGGAAGGTTCAACGATCATCAGCAGCGGCATTCTCCCTTGACTCGAGACCATTTGAGAATCAGGGAACTTTATCCTGGAGTTGCAAAACTAACGACTTTATTAGAAAGTGGAATTACTAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCATGTGTTTATGGATTGAAGGAGATTCAAGTTGGGGAAATGGTGGAATTTGCCAGCAGTGTAAAAGGAATAGGCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATATCACGGCCAAATCTATCCTGGAAACAAGCTTGGAAGCCAGATAA

mRNA sequence

ATGTTGGATCAGAACTTGGCTCGGATAGTAAAACTCTTTGGAATGCAAGAAAAGCTTCAGAAAGCCCAACAAGAATCAACAAAGGAAAAGTTTTCCCTCAATGAAGGCCATAGTGAATCAATAAATCCTGAGCAAAAAGATCTTCCTCCAGGATTATACCCGTTTGCCCCATTCACATGCATTATGAGGCCCACGCTTGAGTGGTATGGCCCAGCCTCGAATTTCGGGTTTGAGGCCAAGGCTGACCTCATGGTAACAGAGCCTTTTTGCCCTATAAAGGTGCATTATGAGGTCCACACGCCGAGTGGTATGGCCCAACCTCAGATTCCGGGTCTGAGGCTGAGGCTGACCTCGTGCCGAGAGCGTCGCTGCGCTACCTTCTATACTCCACACCCCGAGAGTTTAAAACTTGGGACAGCAGGAGAGCACAGCGACGCTCTGACTAAATTTCCTAGACCATTCCATGGTGTCGGAAGGTTCAACGATCATCAGCAGCGGCATTCTCCCTTGACTCGAGACCATTTGAGAATCAGGGAACTTTATCCTGGAGTTGCAAAACTAACGACTTTATTAGAAAGTGGAATTACTAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCATGTGTTTATGGATTGAAGGAGATTCAAGTTGGGGAAATGGTGGAATTTGCCAGCAGTGTAAAAGGAATAGGCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATATCACGGCCAAATCTATCCTGGAAACAAGCTTGGAAGCCAGATAA

Coding sequence (CDS)

ATGTTGGATCAGAACTTGGCTCGGATAGTAAAACTCTTTGGAATGCAAGAAAAGCTTCAGAAAGCCCAACAAGAATCAACAAAGGAAAAGTTTTCCCTCAATGAAGGCCATAGTGAATCAATAAATCCTGAGCAAAAAGATCTTCCTCCAGGATTATACCCGTTTGCCCCATTCACATGCATTATGAGGCCCACGCTTGAGTGGTATGGCCCAGCCTCGAATTTCGGGTTTGAGGCCAAGGCTGACCTCATGGTAACAGAGCCTTTTTGCCCTATAAAGGTGCATTATGAGGTCCACACGCCGAGTGGTATGGCCCAACCTCAGATTCCGGGTCTGAGGCTGAGGCTGACCTCGTGCCGAGAGCGTCGCTGCGCTACCTTCTATACTCCACACCCCGAGAGTTTAAAACTTGGGACAGCAGGAGAGCACAGCGACGCTCTGACTAAATTTCCTAGACCATTCCATGGTGTCGGAAGGTTCAACGATCATCAGCAGCGGCATTCTCCCTTGACTCGAGACCATTTGAGAATCAGGGAACTTTATCCTGGAGTTGCAAAACTAACGACTTTATTAGAAAGTGGAATTACTAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCATGTGTTTATGGATTGAAGGAGATTCAAGTTGGGGAAATGGTGGAATTTGCCAGCAGTGTAAAAGGAATAGGCTTAAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATATCACGGCCAAATCTATCCTGGAAACAAGCTTGGAAGCCAGATAA

Protein sequence

MLDQNLARIVKLFGMQEKLQKAQQESTKEKFSLNEGHSESINPEQKDLPPGLYPFAPFTCIMRPTLEWYGPASNFGFEAKADLMVTEPFCPIKVHYEVHTPSGMAQPQIPGLRLRLTSCRERRCATFYTPHPESLKLGTAGEHSDALTKFPRPFHGVGRFNDHQQRHSPLTRDHLRIRELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNLENENVGIVVFGSDITAKSILETSLEAR
Homology
[Close]
BLAST of Clc04G04660 vs. NCBI nr
Match: YP_003587244.1 (ATPase subunit 1 [Citrullus lanatus] >ACV96623.1 ATPase subunit 1 [Citrullus lanatus])

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-29
Identity = 72/84 (85.71%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  PG A+LTTLLES ITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS V
Sbjct: 2   EFSPGAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. NCBI nr
Match: PPD87917.1 (hypothetical protein GOBAR_DD15147 [Gossypium barbadense])

HSP 1 Score: 139.0 bits (349), Expect = 5.9e-29
Identity = 76/100 (76.00%), Postives = 78/100 (78.00%), Query Frame = 0 

Query: 165 QRHSPLTRDHLR--IRELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYG 224
           QRHS LT +       E  P  A+LTTLLES ITNFYTNFQVDEIGRVVSVGDGIA VYG
Sbjct: 218 QRHSSLTLNSKMELFMEFSPRAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIARVYG 277

Query: 225 LKEIQVGEMVEFASSVKGIGLNLENENVGIVVFGSDITAK 263
           L EIQ GEMVEFAS VKGI LNLENENVGIVVFGSD   K
Sbjct: 278 LNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIK 317

[Close]
BLAST of Clc04G04660 vs. NCBI nr
Match: AHX81372.1 (ATP synthase F1 subunit 1 [Chrysobalanus icaco])

HSP 1 Score: 138.7 bits (348), Expect = 7.7e-29
Identity = 72/84 (85.71%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           EL P  A+LTTLLES ITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS V
Sbjct: 2   ELSPRAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. NCBI nr
Match: ANS54557.1 (ATPase subunit 1 [Cynomorium coccineum])

HSP 1 Score: 138.7 bits (348), Expect = 7.7e-29
Identity = 72/84 (85.71%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           EL P  A+LTTLLES ITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS V
Sbjct: 2   ELSPRAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIAHVYGLKEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. NCBI nr
Match: XP_040259904.1 (ATP synthase subunit alpha, mitochondrial-like [Aegilops tauschii subsp. strangulata] >KAF7036909.1 hypothetical protein CFC21_047426 [Triticum aestivum])

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-28
Identity = 69/84 (82.14%), Postives = 72/84 (85.71%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  P  A+LTTLLES +TNFYTNFQVDEIGRVVSVGDGIACVYGL EIQ GEMVEFAS V
Sbjct: 2   EFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIACVYGLNEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGI+VFGSD   K
Sbjct: 62  KGIALNLENENVGIIVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy Swiss-Prot
Match: P05492 (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-30
Identity = 69/84 (82.14%), Postives = 71/84 (84.52%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  P  A+LTTLLES ITNFYTNFQVDEIGRV+SVGDGIA VYGL EIQ GEMVEFAS V
Sbjct: 2   EFSPRAAELTTLLESRITNFYTNFQVDEIGRVISVGDGIARVYGLNEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy Swiss-Prot
Match: P0C520 (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa OX=4530 GN=ATPA PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-30
Identity = 69/84 (82.14%), Postives = 71/84 (84.52%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  P  A+LTTLLES +TNFYTNFQVDEIGRVVSVGDGIA VYGL EIQ GEMVEFAS V
Sbjct: 2   EFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy Swiss-Prot
Match: P0C521 (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=ATPA PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-30
Identity = 69/84 (82.14%), Postives = 71/84 (84.52%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  P  A+LTTLLES +TNFYTNFQVDEIGRVVSVGDGIA VYGL EIQ GEMVEFAS V
Sbjct: 2   EFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy Swiss-Prot
Match: P0C522 (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=ATPA PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-30
Identity = 69/84 (82.14%), Postives = 71/84 (84.52%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  P  A+LTTLLES +TNFYTNFQVDEIGRVVSVGDGIA VYGL EIQ GEMVEFAS V
Sbjct: 2   EFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy Swiss-Prot
Match: P12862 (ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum OX=4565 GN=ATPA PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-30
Identity = 69/84 (82.14%), Postives = 71/84 (84.52%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  P  A+LTTLLES +TNFYTNFQVDEIGRVVSVGDGIA VYGL EIQ GEMVEFAS V
Sbjct: 2   EFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy TrEMBL
Match: D5I3B4 (ATP synthase subunit alpha OS=Citrullus lanatus OX=3654 GN=atp1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 72/84 (85.71%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  PG A+LTTLLES ITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS V
Sbjct: 2   EFSPGAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy TrEMBL
Match: A0A023T2S5 (ATP synthase subunit alpha OS=Chrysobalanus icaco OX=22978 GN=atp1 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-29
Identity = 72/84 (85.71%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           EL P  A+LTTLLES ITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS V
Sbjct: 2   ELSPRAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy TrEMBL
Match: A0A1B1LNE5 (ATP synthase subunit alpha OS=Cynomorium coccineum OX=51503 GN=atp1 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-29
Identity = 72/84 (85.71%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           EL P  A+LTTLLES ITNFYTNFQVDEIGRVVSVGDGIA VYGLKEIQ GEMVEFAS V
Sbjct: 2   ELSPRAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIAHVYGLKEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGIVVFGSD   K
Sbjct: 62  KGIALNLENENVGIVVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy TrEMBL
Match: M8BVG5 (ATP synthase subunit alpha OS=Aegilops tauschii OX=37682 GN=F775_13294 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 69/84 (82.14%), Postives = 72/84 (85.71%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  P  A+LTTLLES +TNFYTNFQVDEIGRVVSVGDGIACVYGL EIQ GEMVEFAS V
Sbjct: 2   EFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIACVYGLNEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGI+VFGSD   K
Sbjct: 62  KGIALNLENENVGIIVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. ExPASy TrEMBL
Match: A0A3B6GRV2 (ATP synthase subunit alpha OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 69/84 (82.14%), Postives = 72/84 (85.71%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           E  P  A+LTTLLES +TNFYTNFQVDEIGRVVSVGDGIACVYGL EIQ GEMVEFAS V
Sbjct: 2   EFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIACVYGLNEIQAGEMVEFASGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KGI LNLENENVGI+VFGSD   K
Sbjct: 62  KGIALNLENENVGIIVFGSDTAIK 85

[Close]
BLAST of Clc04G04660 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 122.1 bits (305), Expect = 6.9e-28
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0 

Query: 179 ELYPGVAKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSV 238
           EL P  A+LT L ES I NFY NFQVDEIGRVVSVGDGIA VYGL EIQ GEMV FA+ V
Sbjct: 2   ELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGV 61

Query: 239 KGIGLNLENENVGIVVFGSDITAK 263
           KG+ LNLENENVGIVVFG D   K
Sbjct: 62  KGMALNLENENVGIVVFGGDTAIK 85

[Close]
BLAST of Clc04G04660 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-26
Identity = 60/78 (76.92%), Postives = 63/78 (80.77%), Query Frame = 0 

Query: 185 AKLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLN 244
           A+LT L ES I NFY NFQVDEIGRVVSVGDGIA VYGL EIQ GEMV FA+ VKG+ LN
Sbjct: 278 AELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALN 337

Query: 245 LENENVGIVVFGSDITAK 263
           LENENVGIVVFG D   K
Sbjct: 338 LENENVGIVVFGGDTAIK 355

[Close]
BLAST of Clc04G04660 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-10
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 186 KLTTLLESGITNFYTNFQVDEIGRVVSVGDGIACVYGLKEIQVGEMVEFASSVKGIGLNL 245
           +++ ++   I  +     +   G V+ VGDGIA +YGL E+  GE+VEF     GI LNL
Sbjct: 8   EISNIIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNL 67

Query: 246 ENENVGIVVFGSDI 260
           E+ NVG+V+ G  +
Sbjct: 68  ESNNVGVVLMGDGL 81

The following BLAST results are available for this feature:
BLAST of Clc04G04660 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_003587244.12.6e-2985.71ATPase subunit 1 [Citrullus lanatus] >ACV96623.1 ATPase subunit 1 [Citrullus lan... [more]
PPD87917.15.9e-2976.00hypothetical protein GOBAR_DD15147 [Gossypium barbadense][more]
AHX81372.17.7e-2985.71ATP synthase F1 subunit 1 [Chrysobalanus icaco][more]
ANS54557.17.7e-2985.71ATPase subunit 1 [Cynomorium coccineum][more]
XP_040259904.11.0e-2882.14ATP synthase subunit alpha, mitochondrial-like [Aegilops tauschii subsp. strangu... [more]
BLAST of Clc04G04660 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P054921.5e-3082.14ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA P... [more]
P0C5202.5e-3082.14ATP synthase subunit alpha, mitochondrial OS=Oryza sativa OX=4530 GN=ATPA PE=3 S... [more]
P0C5212.5e-3082.14ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica OX=39946... [more]
P0C5222.5e-3082.14ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica OX=399... [more]
P128622.5e-3082.14ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum OX=4565 GN=ATPA P... [more]
BLAST of Clc04G04660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
D5I3B41.3e-2985.71ATP synthase subunit alpha OS=Citrullus lanatus OX=3654 GN=atp1 PE=3 SV=1[more]
A0A023T2S53.7e-2985.71ATP synthase subunit alpha OS=Chrysobalanus icaco OX=22978 GN=atp1 PE=3 SV=1[more]
A0A1B1LNE53.7e-2985.71ATP synthase subunit alpha OS=Cynomorium coccineum OX=51503 GN=atp1 PE=3 SV=1[more]
M8BVG54.9e-2982.14ATP synthase subunit alpha OS=Aegilops tauschii OX=37682 GN=F775_13294 PE=3 SV=1[more]
A0A3B6GRV24.9e-2982.14ATP synthase subunit alpha OS=Triticum aestivum OX=4565 PE=3 SV=1[more]
BLAST of Clc04G04660 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG01190.16.9e-2875.00ATP synthase subunit 1 [more]
AT2G07698.12.2e-2676.92ATPase, F1 complex, alpha subunit protein [more]
ATCG00120.11.7e-1039.19ATP synthase subunit alpha [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyGENE3D2.40.30.20coord: 183..267
e-value: 2.0E-24
score: 87.1
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainPFAMPF02874ATP-synt_ab_Ncoord: 204..257
e-value: 4.6E-11
score: 43.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..46
NoneNo IPR availablePANTHERPTHR48082ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALcoord: 185..259
NoneNo IPR availablePANTHERPTHR48082:SF2ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALcoord: 185..259
NoneNo IPR availableCDDcd18116ATP-synt_F1_alpha_Ncoord: 206..258
e-value: 2.12291E-24
score: 90.9756
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilySUPERFAMILY50615N-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 190..260

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G04660.2Clc04G04660.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046034 ATP metabolic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0005739 mitochondrion
cellular_component GO:0031090 organelle membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism