Clc04G04520 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G04520
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionCRC domain-containing protein TSO1
LocationClcChr04: 15864905 .. 15867265 (+)
RNA-Seq ExpressionClc04G04520
SyntenyClc04G04520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACCTTGGTACTATAAAGAGATTTCCAGCTTTTACTCTTGTTTCCAGAACCTTCTTCCCGTCCACTCCTACAACCTTTACTCTTCTGCTTCATTTCACGATGTATGTCACCTGCAGTGCTGAATCGCACGAGAATCCAAGCGAACACCTCGCACTTCTGTCCAATCGAACTAAATATGCTCCCAATCCTACCTCCCCTACCAGCAGAAGATTCTTCGTGTTTAGAACCACAACTCACCCTTTGTTCTTCAGATCTACATCTAGCAGCGCCTCCTCGCAGTTCAATGTCATTCCGATTCAATGCTCCTTCTTCACCTCTGACATTTTTATTCCTTCCTTTAGCTTCACGATTCCTTTTCCAGTTTGGTTTTTCACCAAAGATTTCACTGATCACTAAAAGAAATTAGGCCTTTAATGTCGGTTGAAAAAAAATAGGATCTTGAATGTCGGTTTTGACCCAAAAAAATTGGATCTTTAATGTCAGTTTTCCACTAATATTATAGATTCAATTTAATAAAGCTACAATGTCGATTTAAAATTGATATTATAAGTGACCTTTTAATCCCAAACAATTTTTCAATCTTCATTTTTTCTTTTCCTCCGTTCCCCATTTTCGTTTTCCCTCTAAAATTTTAGTAGAAAAGGAAAAATAAAAACAACCAAACCCTAATTCTTTCTTTTTTTTTTTTTTTTCACGTCTCTCCCACTTCTCTTTCCCCTCTTCTTCTCTCCATCCTCCCCCTTCCCTCTCAACTTTTTCGTTCTTCCCCCAACCCAAGGTCCGCCGTCATGAGTTGTGCGTCAAATCATCGATTCCTTCGTCAAATTTGCTAGCCTGTCGTGCATTCATCAGCTCTACTATTCTTCATGTTTTGTTGTTGATTATAGCTAATGATTTGTGAATAGACTTTTAGGAAATTGATGGAAAATGCTGGAATTGGGGCGTGTAAAGGAATAATTGGACAGAGGATAACCCAAATGAAAATAACCTCAAGTTTTAAAACCAATGAAATTTGGCCTTTTGTTAATGTCATCACCTTGTAAAATTACTATTTTAACCCTTCCTCTCCTTTCTTCCTTTGTCCTTTTGCAACCTTTTTTCTTTTTTTTTTTTTCATTTTTTTTGCATTTCTTCTTCTTCTTTTTTCCTTTTTGTTGGATTTTATTTTTTTATTTTTTTTTGCGTTTTCTTGCATTTCTTCTTCCAAGCTTTTTCTATCACCGTCGACCTACTTTGTTGAAATTTTCAATTACCCTCTTTTTTGGTGATTTCTTCTCTTTATGTTGCCATCTTCTTCTTCTAAAATAAAAAAAATGTAAGTTGGAACGCGAACCAGAACAAGGGGAAGAGAAGAGAGTGAGACCAAGAAACGAGAGGAATAAGCAAGAGTGAAAATTCGAATGAAGAAAAAAACTTGAAAAAAGAAACTACAAAATTGGTGAGGAAGAAACTAGAGGAAGATGTGAGAGACGAAGAAGCAAGAGGAAGAAGCTAGAGAAAGAATTGAAAGGAAGAAAGTAGAGAAGAAGCAAAAGGAAGAAGCTAGAGGAAGAATTCTCGAACGAAGGAAAAAATCAAAGAAAAAAATTTCTTGTTGTGTCTGATAAAGAACGAGAGTAAGAGTGAAAGGAACAAATGAGGGAGTGGAAGAAACAAGAATTCATTTGCCTAAAGCTGTAAGTAGCAATGTTTTATCTTCTCTATTATTATCGATTGAAGTTAGAGAATCTCAATTTGTGTTAGGTTTGGTGAGTATGATCTAGTAGTTTGAGTTTATAATGAACAATGTCTTAAAATCTAGTGAAAGATGCCAAGAGCTCACTGTTGCAATAGTTTATGTACTTAAAGTAGTGTTGATAACATCAAAATTTTAAGCTGAACCAATAATTTTCTTTAGATATTATGAATACTTTGCTACTAGCGTGTACTACATTGAGTCGTTTTCATGTTAAGATTGCTCCAACAAATCGATATATGAAGTCAAGGTTCTTGAAATTCGCAGACAGATGAATCCTCCTTTAGATTGAGCGTTCGATTCAAACTCGAGAAGCATGGCATGACTCAAATAGAGCCCAAGTTTGAGAAAATACCCTATGAGGATGTGATGCCAAAAACACTTTCTTATGGTTGCCCTTCTAGCACAAGTGTTAAGAGTGTTTCTCCCAACAGTAAGAGGGTTACTTTACACTTTGTAATGTTTTAAGAAGGCTTGCTCCAACACATCTTCTGCGATATTCAGCAGAGGAGCAGAGTACATTTCAAATTTCACGAGGTATTCTTCATATGTACCATCCCATTGAATCCTCAGAAGCCGAGATAGAAGCGTACCTTCTAGCGTTGGTCGGAGGCGATTGA

mRNA sequence

ATGAAGAACCTTGGTACTATAAAGAGATTTCCAGCTTTTACTCTTGTTTCCAGAACCTTCTTCCCGTCCACTCCTACAACCTTTACTCTTCTGCTTCATTTCACGATGTATGTCACCTGCAGTGCTGAATCGCACGAGAATCCAAGCGAACACCTCGCACTTCTGTCCAATCGAACTAAATATGCTCCCAATCCTACCTCCCCTACCAGCAGAAGATTCTTCGTGTTTAGAACCACAACTCACCCTTTGTTCTTCAGATCTACATCTAGCAGCGCCTCCTCGCAGTTCAATGTCATTCCGATTCAATGCTCCTTCTTCACCTCTGACATTTTTATTCCTTCCTTTAGCTTCACGATTCCTTTTCCAACAGATGAATCCTCCTTTAGATTGAGCGTTCGATTCAAACTCGAGAAGCATGGCATGACTCAAATAGAGCCCAAGTTTGAGAAAATACCCTATGAGGATGTGATGCCAAAAACACTTTCTTATGGTTGCCCTTCTAGCACAAGTGTTAAGAGTGTTTCTCCCAACACAGAGGAGCAGAGTACATTTCAAATTTCACGAGGTATTCTTCATATGTACCATCCCATTGAATCCTCAGAAGCCGAGATAGAAGCGTACCTTCTAGCGTTGGTCGGAGGCGATTGA

Coding sequence (CDS)

ATGAAGAACCTTGGTACTATAAAGAGATTTCCAGCTTTTACTCTTGTTTCCAGAACCTTCTTCCCGTCCACTCCTACAACCTTTACTCTTCTGCTTCATTTCACGATGTATGTCACCTGCAGTGCTGAATCGCACGAGAATCCAAGCGAACACCTCGCACTTCTGTCCAATCGAACTAAATATGCTCCCAATCCTACCTCCCCTACCAGCAGAAGATTCTTCGTGTTTAGAACCACAACTCACCCTTTGTTCTTCAGATCTACATCTAGCAGCGCCTCCTCGCAGTTCAATGTCATTCCGATTCAATGCTCCTTCTTCACCTCTGACATTTTTATTCCTTCCTTTAGCTTCACGATTCCTTTTCCAACAGATGAATCCTCCTTTAGATTGAGCGTTCGATTCAAACTCGAGAAGCATGGCATGACTCAAATAGAGCCCAAGTTTGAGAAAATACCCTATGAGGATGTGATGCCAAAAACACTTTCTTATGGTTGCCCTTCTAGCACAAGTGTTAAGAGTGTTTCTCCCAACACAGAGGAGCAGAGTACATTTCAAATTTCACGAGGTATTCTTCATATGTACCATCCCATTGAATCCTCAGAAGCCGAGATAGAAGCGTACCTTCTAGCGTTGGTCGGAGGCGATTGA

Protein sequence

MKNLGTIKRFPAFTLVSRTFFPSTPTTFTLLLHFTMYVTCSAESHENPSEHLALLSNRTKYAPNPTSPTSRRFFVFRTTTHPLFFRSTSSSASSQFNVIPIQCSFFTSDIFIPSFSFTIPFPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTEEQSTFQISRGILHMYHPIESSEAEIEAYLLALVGGD
Homology
[Close]
BLAST of Clc04G04520 vs. NCBI nr
Match: XP_008449927.1 (PREDICTED: CRC domain-containing protein TSO1, partial [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 7.2e-14
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 121 FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE 180
           F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Sbjct: 481 FLNDESSSRLSVRFKLEKHGITQTEPKFEKTPCEDVTPETLCNGCPSITDVKSVSPNSK 539

[Close]
BLAST of Clc04G04520 vs. NCBI nr
Match: KAA0057436.1 (CRC domain-containing protein TSO1 [Cucumis melo var. makuwa] >TYK30135.1 CRC domain-containing protein TSO1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 7.2e-14
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 121 FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE 180
           F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Sbjct: 496 FLNDESSSRLSVRFKLEKHGITQTEPKFEKTPCEDVTPETLCNGCPSITDVKSVSPNSK 554

[Close]
BLAST of Clc04G04520 vs. NCBI nr
Match: XP_004145421.1 (CRC domain-containing protein TSO1 [Cucumis sativus] >KGN61676.1 hypothetical protein Csa_006253 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 7.2e-14
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 121 FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE 180
           F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Sbjct: 497 FLNDESSSRLSVRFKLEKHGITQTEPKFEKTPCEDVTPETLCNGCPSITGVKSVSPNSK 555

[Close]
BLAST of Clc04G04520 vs. NCBI nr
Match: XP_038906811.1 (protein tesmin/TSO1-like CXC 2 [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 7.2e-14
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 121 FPTDESSFR-LSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE 180
           F  DESS R LSVRFKLEKHG+TQ EPKFEK P EDVMP+TL  GCPSST VKSVSPN++
Sbjct: 499 FLNDESSSRLLSVRFKLEKHGITQTEPKFEKTPCEDVMPETLCNGCPSSTGVKSVSPNSK 558

[Close]
BLAST of Clc04G04520 vs. NCBI nr
Match: XP_022999801.1 (protein tesmin/TSO1-like CXC 2 [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-10
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 121 FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTS-VKSVSPNTE 180
           F  DESS+RLSVRFKLEK G+ Q E KFEK P  DVMP+T+  GC SST  VKSVSPN++
Sbjct: 471 FIDDESSYRLSVRFKLEKQGIIQTETKFEKTPSADVMPETICNGCSSSTGVVKSVSPNSK 530

[Close]
BLAST of Clc04G04520 vs. ExPASy TrEMBL
Match: M0THR5 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-16
Identity = 61/119 (51.26%), Postives = 69/119 (57.98%), Query Frame = 0 

Query: 2   KNLGTIKRFPAFTLVSRTFFPSTPTTFTLLLHFTMYVTCSAESHENPSEHLALLSNRTKY 61
           KN GT+ R P  T VS T  PSTPTT T  L  T YVT  AES ENP EH+A   + T+ 
Sbjct: 15  KNRGTMNRQPPSTFVSSTRLPSTPTTCTRQLPLTTYVTWKAESQENPGEHMAWPFSLTRS 74

Query: 62  APNPTSPTSRRFFVFRTTTHPLFFRSTSSSASSQFNVIPIQCSFFTSDIFIPSFSFTIP 121
           AP+PTSP   RF VF TTT P F  STS  ASS F   P   S   S +   SF+ T+P
Sbjct: 75  APSPTSPIRGRFLVFSTTTQPPFLMSTSRGASSWFRTTPSLSSAEGSGMAWLSFTLTMP 133

[Close]
BLAST of Clc04G04520 vs. ExPASy TrEMBL
Match: A0A5D3E4C7 (CRC domain-containing protein TSO1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001190 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 121 FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE 180
           F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Sbjct: 496 FLNDESSSRLSVRFKLEKHGITQTEPKFEKTPCEDVTPETLCNGCPSITDVKSVSPNSK 554

[Close]
BLAST of Clc04G04520 vs. ExPASy TrEMBL
Match: A0A0A0LNU4 (CRC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223670 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 121 FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE 180
           F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Sbjct: 497 FLNDESSSRLSVRFKLEKHGITQTEPKFEKTPCEDVTPETLCNGCPSITGVKSVSPNSK 555

[Close]
BLAST of Clc04G04520 vs. ExPASy TrEMBL
Match: A0A1S3BP37 (CRC domain-containing protein TSO1 OS=Cucumis melo OX=3656 GN=LOC103491656 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 121 FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTSVKSVSPNTE 180
           F  DESS RLSVRFKLEKHG+TQ EPKFEK P EDV P+TL  GCPS T VKSVSPN++
Sbjct: 481 FLNDESSSRLSVRFKLEKHGITQTEPKFEKTPCEDVTPETLCNGCPSITDVKSVSPNSK 539

[Close]
BLAST of Clc04G04520 vs. ExPASy TrEMBL
Match: A0A6J1KE48 (protein tesmin/TSO1-like CXC 2 OS=Cucurbita maxima OX=3661 GN=LOC111494159 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 121 FPTDESSFRLSVRFKLEKHGMTQIEPKFEKIPYEDVMPKTLSYGCPSSTS-VKSVSPNTE 180
           F  DESS+RLSVRFKLEK G+ Q E KFEK P  DVMP+T+  GC SST  VKSVSPN++
Sbjct: 471 FIDDESSYRLSVRFKLEKQGIIQTETKFEKTPSADVMPETICNGCSSSTGVVKSVSPNSK 530

The following BLAST results are available for this feature:
BLAST of Clc04G04520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449927.17.2e-1474.58PREDICTED: CRC domain-containing protein TSO1, partial [Cucumis melo][more]
KAA0057436.17.2e-1474.58CRC domain-containing protein TSO1 [Cucumis melo var. makuwa] >TYK30135.1 CRC do... [more]
XP_004145421.17.2e-1474.58CRC domain-containing protein TSO1 [Cucumis sativus] >KGN61676.1 hypothetical pr... [more]
XP_038906811.17.2e-1476.67protein tesmin/TSO1-like CXC 2 [Benincasa hispida][more]
XP_022999801.16.3e-1066.67protein tesmin/TSO1-like CXC 2 [Cucurbita maxima][more]
BLAST of Clc04G04520 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc04G04520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
M0THR51.7e-1651.26Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1[more]
A0A5D3E4C73.5e-1474.58CRC domain-containing protein TSO1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A0A0LNU43.5e-1474.58CRC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223670 PE=3 SV... [more]
A0A1S3BP373.5e-1474.58CRC domain-containing protein TSO1 OS=Cucumis melo OX=3656 GN=LOC103491656 PE=3 ... [more]
A0A6J1KE483.1e-1066.67protein tesmin/TSO1-like CXC 2 OS=Cucurbita maxima OX=3661 GN=LOC111494159 PE=3 ... [more]
BLAST of Clc04G04520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G04520.2Clc04G04520.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity