Clc04G04190 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G04190
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	PMD domain-containing protein
Location	ClcChr04: 14529078 .. 14530201 (-)
RNA-Seq Expression	Clc04G04190
Synteny	Clc04G04190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGCCGTCACCCTACAGGTAGGGATGACCCTAGGTCTTTGAACTATTGAATTAGGGATGAGCCCAGGAAGATCTTAGCGATTTGAAGGTCTTAGCGAATGAAGTTTGCCGTCACCCTACAGGTAGGGATGACCTTGGGTCTGTGAACTATTGAATTAGGGATGAGCCCATGAAGATCTTAGCGATTTGAAGGTCTTAGCGACTGAAGTTCGCCGTCACCCTACAGGTAGGGATGACCCTGGGTCTGTGAACTATTGAATTAGGGATGAGCCCAGGAAAATCTTAGCGATTTGAAGGTCTTAGCGACTGAAGTTCGCGTCACCCTACAGGTAGGGATGACCCTGGGTCTGTGAACTATTGAATTAGGGATGAGCTCGGGAAGATCTTAGCGATTTGAAGGTCTTAGCGACTGAAGTTCACCGTCACCCTACAGGTAGGGATGACCCTGGGTCTTTGAACTATTGAATTAGGGATGAGCCCAGGAAGATCTTAGCGATTTGAATTTTGACCCTAGAACTGGGCACGCTTAGGGGTGGTGATGTTGCGATGTCGATATCAGGGGGAGAAATTTTTTTTTGGAATATGTTCACATCTGCTTCACCATTTAAAACTTTGATGTCTCTATTTCTTCTAGATCGAGTAATTAAGACCTAACTTCTTATGGTGACGTTTTCCTTGCAGGATAATGGTTTACTTTGCGGAGCATGTCTCGTCTGGGCAAACACAGCTCGTGATCCTTGCAGAGAGGCACCAGCCTATAAAGAGTGGACTTACCTTTATTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAGATATTTGGCCAGAGTTAGATGACAATATGACCCTCCTCGAGCTATCTGTTGAGGTGCCTTTTCATCAGGAGGAAAAGGTGTGGATCCTAAGGTCGCTGATTCATGACACAGCCCCTTCCCTGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGCACTATTGTGAAAGTCCCAGGTGAATTCACTTTTATCGACTACTATTGGGAATGGTTGGAGCTTGTAGTTAGCCGAAATGAACGGTTTCTTCACGACGTTTGTTTGTTTAATGCGGTGATGGCCTCTTCATAA

mRNA sequence

ATGGCTCGCCGTCACCCTACAGATCTTAGCGATTTGAAGGTCTTAGCGACTGAAGTTCGCCGTCACCCTACAGGTAGGGATGACCCTGGGATAATGGTTTACTTTGCGGAGCATGTCTCGTCTGGGCAAACACAGCTCGTGATCCTTGCAGAGAGGCACCAGCCTATAAAGAGTGGACTTACCTTTATTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAGATATTTGGCCAGAGTTAGATGACAATATGACCCTCCTCGAGCTATCTGTTGAGGTGCCTTTTCATCAGGAGGAAAAGGTGTGGATCCTAAGGTCGCTGATTCATGACACAGCCCCTTCCCTGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGCACTATTGTGAAAGTCCCAGGTGAATTCACTTTTATCGACTACTATTGGGAATGGTTGGAGCTTGTAGTTAGCCGAAATGAACGGTTTCTTCACGACGTTTGTTTGTTTAATGCGGTGATGGCCTCTTCATAA

Coding sequence (CDS)

ATGGCTCGCCGTCACCCTACAGATCTTAGCGATTTGAAGGTCTTAGCGACTGAAGTTCGCCGTCACCCTACAGGTAGGGATGACCCTGGGATAATGGTTTACTTTGCGGAGCATGTCTCGTCTGGGCAAACACAGCTCGTGATCCTTGCAGAGAGGCACCAGCCTATAAAGAGTGGACTTACCTTTATTGTGGAGGCTCCCCTAACTGGTTTCTTTTCAGATATTTGGCCAGAGTTAGATGACAATATGACCCTCCTCGAGCTATCTGTTGAGGTGCCTTTTCATCAGGAGGAAAAGGTGTGGATCCTAAGGTCGCTGATTCATGACACAGCCCCTTCCCTGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGCACTATTGTGAAAGTCCCAGGTGAATTCACTTTTATCGACTACTATTGGGAATGGTTGGAGCTTGTAGTTAGCCGAAATGAACGGTTTCTTCACGACGTTTGTTTGTTTAATGCGGTGATGGCCTCTTCATAA

Protein sequence

MARRHPTDLSDLKVLATEVRRHPTGRDDPGIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWEWLELVVSRNERFLHDVCLFNAVMASS

Homology

[Close]

BLAST of Clc04G04190 vs. NCBI nr
Match: TYK06433.1 (hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 5.8e-38
Identity = 79/143 (55.24%), Postives = 100/143 (69.93%), Query Frame = 0


Query: 32  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVE 91
           MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  LL LSVE
Sbjct: 96  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVE 155

Query: 92  VPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWEWL 151
           VP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW T+ KVPGEF F D YWEWL
Sbjct: 156 VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFFFTDCYWEWL 215

Query: 152 ELVVSRNERFLHDVCLFNAVMAS 175
           +LVV RN R L+   L+ AV AS
Sbjct: 216 DLVVGRNTRLLYSTRLYGAVTAS 238

[Close]

BLAST of Clc04G04190 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 7.6e-38
Identity = 79/143 (55.24%), Postives = 99/143 (69.23%), Query Frame = 0


Query: 32  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVE 91
           MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  L  LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 92  VPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWEWL 151
           VP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW T+ KVPGEF F D YWEWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 152 ELVVSRNERFLHDVCLFNAVMAS 175
           ELVV RN R L+   L+ AV AS
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTAS 143

[Close]

BLAST of Clc04G04190 vs. NCBI nr
Match: KAA0053734.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-37
Identity = 78/143 (54.55%), Postives = 98/143 (68.53%), Query Frame = 0


Query: 32  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVE 91
           MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  L  LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 92  VPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWEWL 151
           +P  + +  WIL+S IH+ AP+    LTLG+R++EG+TRW T+ KVPGEF F D YWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 152 ELVVSRNERFLHDVCLFNAVMAS 175
           ELVV RN R L+   L+  V AS
Sbjct: 121 ELVVGRNTRLLYSTRLYGPVTAS 143

[Close]

BLAST of Clc04G04190 vs. NCBI nr
Match: KAA0041618.1 (hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-37
Identity = 78/145 (53.79%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 30  GIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELS 89
           G MVYF E   SG   LVIL++R+QP + GL+ IVE    G F+D WP LD+N  L  LS
Sbjct: 15  GTMVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADHWPRLDNNSVLPRLS 74

Query: 90  VEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWE 149
           VEVP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW T+ KVPGEF F D YWE
Sbjct: 75  VEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWE 134

Query: 150 WLELVVSRNERFLHDVCLFNAVMAS 175
           WLELVV RN R L+   L++ V AS
Sbjct: 135 WLELVVGRNTRLLYSTHLYSVVTAS 159

[Close]

BLAST of Clc04G04190 vs. NCBI nr
Match: TYK04516.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-36
Identity = 76/145 (52.41%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 30  GIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELS 89
           G MVYF E   SG   L+IL++R+QP + GL+ IVE    G F+D WP LD+N  L  LS
Sbjct: 15  GTMVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLS 74

Query: 90  VEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWE 149
           VE+P  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW T+ KVPGEF F D YWE
Sbjct: 75  VEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWE 134

Query: 150 WLELVVSRNERFLHDVCLFNAVMAS 175
           WLELVV RN R L+   L+  V AS
Sbjct: 135 WLELVVGRNTRLLYSTRLYGVVTAS 159

[Close]

BLAST of Clc04G04190 vs. ExPASy TrEMBL
Match: A0A5D3C3D7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001360 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.8e-38
Identity = 79/143 (55.24%), Postives = 100/143 (69.93%), Query Frame = 0


Query: 32  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVE 91
           MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  LL LSVE
Sbjct: 96  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVE 155

Query: 92  VPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWEWL 151
           VP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW T+ KVPGEF F D YWEWL
Sbjct: 156 VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFFFTDCYWEWL 215

Query: 152 ELVVSRNERFLHDVCLFNAVMAS 175
           +LVV RN R L+   L+ AV AS
Sbjct: 216 DLVVGRNTRLLYSTRLYGAVTAS 238

[Close]

BLAST of Clc04G04190 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.7e-38
Identity = 79/143 (55.24%), Postives = 99/143 (69.23%), Query Frame = 0


Query: 32  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVE 91
           MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  L  LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 92  VPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWEWL 151
           VP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW T+ KVPGEF F D YWEWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 152 ELVVSRNERFLHDVCLFNAVMAS 175
           ELVV RN R L+   L+ AV AS
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTAS 143

[Close]

BLAST of Clc04G04190 vs. ExPASy TrEMBL
Match: A0A5A7UET3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001110 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 78/143 (54.55%), Postives = 98/143 (68.53%), Query Frame = 0


Query: 32  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVE 91
           MVYF E   SG   LVIL++R+QP + GL+ IVE P  G F+D WP LD+N  L  LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 92  VPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWEWL 151
           +P  + +  WIL+S IH+ AP+    LTLG+R++EG+TRW T+ KVPGEF F D YWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 152 ELVVSRNERFLHDVCLFNAVMAS 175
           ELVV RN R L+   L+  V AS
Sbjct: 121 ELVVGRNTRLLYSTRLYGPVTAS 143

[Close]

BLAST of Clc04G04190 vs. ExPASy TrEMBL
Match: A0A5A7TFC8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00910 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.4e-37
Identity = 78/145 (53.79%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 30  GIMVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELS 89
           G MVYF E   SG   LVIL++R+QP + GL+ IVE    G F+D WP LD+N  L  LS
Sbjct: 15  GTMVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADHWPRLDNNSVLPRLS 74

Query: 90  VEVPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWE 149
           VEVP  + +  W+L+S IH+ AP+    LTLG+R++EG+TRW T+ KVPGEF F D YWE
Sbjct: 75  VEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWE 134

Query: 150 WLELVVSRNERFLHDVCLFNAVMAS 175
           WLELVV RN R L+   L++ V AS
Sbjct: 135 WLELVVGRNTRLLYSTHLYSVVTAS 159

[Close]

BLAST of Clc04G04190 vs. ExPASy TrEMBL
Match: A0A5D3BXQ4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001510 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 5.3e-37
Identity = 76/143 (53.15%), Postives = 96/143 (67.13%), Query Frame = 0


Query: 32  MVYFAEHVSSGQTQLVILAERHQPIKSGLTFIVEAPLTGFFSDIWPELDDNMTLLELSVE 91
           MVYF E   SG   LVIL++R+Q  + GL+ IVE P  G F+D WP LD+N  L  LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQSREDGLSLIVEKPWAGTFADHWPRLDNNSVLSRLSVE 60

Query: 92  VPFHQEEKVWILRSLIHDTAPSLDPLLTLGRRMLEGETRWSTIVKVPGEFTFIDYYWEWL 151
           +P  + +  W+L+S IHD AP+    LT G+R++EG+T W T+ KVPGEF F D YWEWL
Sbjct: 61  IPLSEGKSAWVLQSFIHDEAPNSGRALTFGQRLIEGQTHWGTVTKVPGEFCFTDCYWEWL 120

Query: 152 ELVVSRNERFLHDVCLFNAVMAS 175
           ELVV RN R L+   L+ AV AS
Sbjct: 121 ELVVGRNTRLLYSTHLYGAVTAS 143

The following BLAST results are available for this feature:

BLAST of Clc04G04190 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06433.1	5.8e-38	55.24	hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa]	[more]
KAA0047478.1	7.6e-38	55.24	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
KAA0053734.1	2.9e-37	54.55	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0041618.1	4.9e-37	53.79	hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa]	[more]
TYK04516.1	1.1e-36	52.41	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Clc04G04190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G04190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3D7	2.8e-38	55.24	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TX42	3.7e-38	55.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UET3	1.4e-37	54.55	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7TFC8	2.4e-37	53.79	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BXQ4	5.3e-37	53.15	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Clc04G04190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G04190.1	Clc04G04190.1	mRNA