Clc04G03850 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTCTACACAATAGAAAATTAGTTCACATAGATTACAGTTGATCAGCCAAGAATTTCTGACTATAAACATAGAAATGGTCACCCATTTCTTTAGAGAGAGAAACACAAAATAGCGAGAGAGCAGAAATTCTTCTCTACAAAAAAAAAGAAAAAAAACATTAAAATCCATTTTTTCATTCATATATCTCTCTCTGTGTGTTTATCGAATTGGTTTGTGTTTGTGTTAATGGAAGCTGGAGTGAGCAATAATAATAAAAATGATCAGAAGGGGTTGCCGTCGTGGCCGCCACGGACGGCAGAGAGTGAGATTATTATGAGAAAGAAGTCAACGGCGCCACCTTTTCTGTTGAAGACTTACACGGTGGTGGAGGATCCGGCGACGGACGAGGTGATATCGTGGAACGACGACGGGACAGCGTTTGTGGTTTGGCAGACGGTGGAGTTTGCTAAAGATGTTTTGCCGAAGCTGTTTAAGCATTGCAATTTCTCTAGCTTTGTTCGTCAACTTAATACCTATGTACGTTTTTCTTCTTTCTTTTCTGTTTCTTATTTACACATGTTTTTCTCAGAAAAAAAAAAAAAACTTATTTCACACATATACTTTTTTTTTTTCAAAATCACAAATATGCTGTGGAGATTTGAAGTCGGATCGGTTAGAATAACAAGAGTAAAATGAAGAAAAAAGGAAAAGTTATACAAGTTTTTCACTTTTTATCTTTACGCTTCAAATTCTCAAAATTTAAAGATTATATAATGTAAGATTGGGTAAATTTGACATTTCACATTAAAATTTTCAGTGGTAAGTTAATTAAACTTAGGTTGTGTCTAATAAATCCCTCTTTATTGACACATCTATATTTTTACTGTTAGTATAGATGTTCATTACTGATGGAGCTTCGAACCGTCAAAAAAGTCTTTTTTTTGCCGATGAATTTTTACGGTGTTGGCATAAGTAAATTAAATTTTGTTAAGTGAAAGTTGAACCAATTGGTTTGGAATATAGAAAAGCAAATACATCCATGAATACAGACACAAAAAAATTTACAAATCCTATTAAAGAAAAGACATAAGATGTGTTTAAAAAAGAAAAAAAAATGGAAAAAAAAAACACCTAAGAGGTGAATCCCAACTCACACTTTTGTGTCTAATTGAGTCTATTAAAATGAATTTCTAAAAAGAAAGTATAGGAATTCAGTAGACACAAATTAGAAGATTAAAAAAGAACCTATTGTACTTTATTCTGGGTTTGCTCCTTAATTTGGCACTCCAAAATTTCAAGAAAGATTCTACATAAACAAAAGTTATAACAAAAAAATTAGTATAAATTACCACCCATTTGTTTAAATTTTAGTACTATATGCAAATTGAATAAATGATACTCTTTTTAAAATTCAATCTCATTTGAAAATGCAAGAAAGAAAATAAGGAAGAATACAAAAACCCAACTCACTCTTCGTTTTCATTTATTTATTTAATTTTCCATTTTTTTTTAAAGTAAAAACATAACAAAACCTAAACCCCTCTTCCAAAATTGTATAAAAAACCTCGTCATTATTATTTTTTTCATTGTATTTTTTAAACAAAAGTATAAACAGGTAAATATATATATTTTTTTAAAAAACTTGTATATGTATTATCAAAATAGAGTAGCATAATATTTAATAATTATTAGTCTTTAGAGTAAATTAATACTTCTTGTTATGTTCAAAATAAATTGAGATTTTTTTTTTCTTATCTTTGATTTTGACCTAATTATAAATTGAGATTTTTGAGTCTTCGAGTGAGATTTTGACATCTACATTTTTAGTTTACTAATTAAGTTTGATTATTTGCATTCATGTTTCAGACCCAAGAAAAGGTTTTAAGTTGTACTTGTCTAACCTAACTTGATTTGAATTTGCATCATAAAGAAGTTTACTGTATTTGACATCTTGTTTTATTAATTTTCACAAATAAAATAATTAATCATATTTGTTGGCTTATGGGCATATTAATTAAGCATACTCATTTAATTTTGTACTTTTTTTTCTTTTGTTAATGAAATTATTTTCAATAACGATATAAATGGTCTATTCTTCCTTCTTTATGCATCTTTGTCAAGTTCAACTTTTTTAGATGTCCTTTCTTCTTGCTAATTATCATTGAATTTTTAAAAGTCTAATTTTGTTTACTTGTACAATCTTGTTGTAATAGAATCTACAACATTTCAAACAAAATATACTTTTTTTTTTCTCACAAAAACTTCTTGAAAATTATTTTGAACCTCTCAATACATTTCAATGTGGATGTTTATTGAGACCCGTTGCTAACTCTCTAGTGTATGTTTCTTTGAATGACTAGTTCTTGTCTCCACAAAACATTTCCCCAAACATAGGAAGACAATTCTTCCAAGTGAGAAATTATTCAATGAGATCGTTACAATATGACTGTCTTCTAATAGTTGTAGGATGTGGATTTGAAAATTTGCATGCCCATACTAATAAAACCATTAGTGTTTTGAGATACTACTCTTTCATACATCAAATAGTGCACTAATAGTCACGTCTTGACAACCTTCTCAAATAATAATCTCCTTCCTATTTAGGTTGATATACTCAGGAGGATAGTACTTGAGCTTGAATGTTCTTGCAAGCAAGCATGGTTGGTTATATAAAATCTGTCCAGCTGTTCTCTTTAGATCCTTGAGCAACCATAATTGAGAAACATACCAAGCAACTAAGATTTAAAATACATTTCTAGAATTTGGAAATTGAACAACTAGGCATAAATCTTATTGATTCAAAATAGATATTCAATTCCTTTTTTTAAACAAATCTTTAAGTAGGTCAATCCTTTTCTCAAGTTATAATTTTCGTTGTTCGTTTTATTGAAGGGATTCCGAAAGGTGACGACAACAAGGTGGGAGTTTTGCAACGACAAATTTCAAAAGGGTGAAAAGGAAAAGCTCTGCGAAATACGAAGAAGAAAGACATGGACCAACAAGCAACAACATGAGATTGATGAAGATCAAAGATCCTCCTCTTCGAACTCATCATCTTCACAATACAATACTCTAATGGATGAGAACAAGAGGTTGAAGAAGGAAAATGGAGCCTTAAGCTCAGAGCTTGTAAGCATGAAAAACAAGTGTAGAGAGCTTTTTGATTTGGTGGCTAAGTATGAAAATATTTCAAAGAAAGAAGAGGAAGATGAGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGAAGGGGAGAGAGAGAGGAAGAGAAAAAGGGCAGAAGAGATTAGTGAAACTGCAACTTTTTTACTATCTCAATCATGCAAATGAAGGCCAAAGTGGAGAAAAGCAATTATTATTAGAGTTTTAGAAAGGCTACTAAAGAAGAATCATGTGGCTTGTAGAGTTATTAAGCTAGGGAATAGTGCATTATGAAGAAGTATACATATGGAAAAGAAAAAAAAAAGGTTTGACTTTGTTTCCCTTTATATTTCTAAAAGACTAATAAAGCCTTTGAATGGCTAACATGTCAAATGATGGGCACAAGCTCCATCTTTCAATTTATATGATTGTAGTTAAAATAAACTTCTATTTCCATTGATCAATGGATTTAACAGGTTATTATCATTAAGAATATTACTAAATAGCATATTTTTGAGTGATTCTAAAGTGGTTAAAATCACTTTTGTTATTTTCAAAA ATTCTACACAATAGAAAATTAGTTCACATAGATTACAGTTGATCAGCCAAGAATTTCTGACTATAAACATAGAAATGGTCACCCATTTCTTTAGAGAGAGAAACACAAAATAGCGAGAGAGCAGAAATTCTTCTCTACAAAAAAAAAGAAAAAAAACATTAAAATCCATTTTTTCATTCATATATCTCTCTCTGTGTGTTTATCGAATTGGTTTGTGTTTGTGTTAATGGAAGCTGGAGTGAGCAATAATAATAAAAATGATCAGAAGGGGTTGCCGTCGTGGCCGCCACGGACGGCAGAGAGTGAGATTATTATGAGAAAGAAGTCAACGGCGCCACCTTTTCTGTTGAAGACTTACACGGTGGTGGAGGATCCGGCGACGGACGAGGTGATATCGTGGAACGACGACGGGACAGCGTTTGTGGTTTGGCAGACGGTGGAGTTTGCTAAAGATGTTTTGCCGAAGCTGTTTAAGCATTGCAATTTCTCTAGCTTTGTTCGTCAACTTAATACCTATGGATTCCGAAAGGTGACGACAACAAGGTGGGAGTTTTGCAACGACAAATTTCAAAAGGGTGAAAAGGAAAAGCTCTGCGAAATACGAAGAAGAAAGACATGGACCAACAAGCAACAACATGAGATTGATGAAGATCAAAGATCCTCCTCTTCGAACTCATCATCTTCACAATACAATACTCTAATGGATGAGAACAAGAGGTTGAAGAAGGAAAATGGAGCCTTAAGCTCAGAGCTTGTAAGCATGAAAAACAAGTGTAGAGAGCTTTTTGATTTGGTGGCTAAGTATGAAAATATTTCAAAGAAAGAAGAGGAAGATGAGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGAAGGGGAGAGAGAGAGGAAGAGAAAAAGGGCAGAAGAGATTAGTGAAACTGCAACTTTTTTACTATCTCAATCATGCAAATGAAGGCCAAAGTGGAGAAAAGCAATTATTATTAGAGTTTTAGAAAGGCTACTAAAGAAGAATCATGTGGCTTGTAGAGTTATTAAGCTAGGGAATAGTGCATTATGAAGAAGTATACATATGGAAAAGAAAAAAAAAAGGTTTGACTTTGTTTCCCTTTATATTTCTAAAAGACTAATAAAGCCTTTGAATGGCTAACATGTCAAATGATGGGCACAAGCTCCATCTTTCAATTTATATGATTGTAGTTAAAATAAACTTCTATTTCCATTGATCAATGGATTTAACAGGTTATTATCATTAAGAATATTACTAAATAGCATATTTTTGAGTGATTCTAAAGTGGTTAAAATCACTTTTGTTATTTTCAAAA ATGGAAGCTGGAGTGAGCAATAATAATAAAAATGATCAGAAGGGGTTGCCGTCGTGGCCGCCACGGACGGCAGAGAGTGAGATTATTATGAGAAAGAAGTCAACGGCGCCACCTTTTCTGTTGAAGACTTACACGGTGGTGGAGGATCCGGCGACGGACGAGGTGATATCGTGGAACGACGACGGGACAGCGTTTGTGGTTTGGCAGACGGTGGAGTTTGCTAAAGATGTTTTGCCGAAGCTGTTTAAGCATTGCAATTTCTCTAGCTTTGTTCGTCAACTTAATACCTATGGATTCCGAAAGGTGACGACAACAAGGTGGGAGTTTTGCAACGACAAATTTCAAAAGGGTGAAAAGGAAAAGCTCTGCGAAATACGAAGAAGAAAGACATGGACCAACAAGCAACAACATGAGATTGATGAAGATCAAAGATCCTCCTCTTCGAACTCATCATCTTCACAATACAATACTCTAATGGATGAGAACAAGAGGTTGAAGAAGGAAAATGGAGCCTTAAGCTCAGAGCTTGTAAGCATGAAAAACAAGTGTAGAGAGCTTTTTGATTTGGTGGCTAAGTATGAAAATATTTCAAAGAAAGAAGAGGAAGATGAGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGAAGGGGAGAGAGAGAGGAAGAGAAAAAGGGCAGAAGAGATTAGTGAAACTGCAACTTTTTTACTATCTCAATCATGCAAATGA MEAGVSNNNKNDQKGLPSWPPRTAESEIIMRKKSTAPPFLLKTYTVVEDPATDEVISWNDDGTAFVVWQTVEFAKDVLPKLFKHCNFSSFVRQLNTYGFRKVTTTRWEFCNDKFQKGEKEKLCEIRRRKTWTNKQQHEIDEDQRSSSSNSSSSQYNTLMDENKRLKKENGALSSELVSMKNKCRELFDLVAKYENISKKEEEDERPKLFGVRLEEGERERKRKRAEEISETATFLLSQSCK Homology
BLAST of Clc04G03850 vs. NCBI nr
Match: XP_038883399.1 (heat stress transcription factor B-3-like [Benincasa hispida]) HSP 1 Score: 403.3 bits (1035), Expect = 1.5e-108 Identity = 213/243 (87.65%), Postives = 226/243 (93.00%), Query Frame = 0
BLAST of Clc04G03850 vs. NCBI nr
Match: TYK11083.1 (heat stress transcription factor B-3 [Cucumis melo var. makuwa]) HSP 1 Score: 387.9 bits (995), Expect = 6.5e-104 Identity = 204/243 (83.95%), Postives = 220/243 (90.53%), Query Frame = 0
BLAST of Clc04G03850 vs. NCBI nr
Match: XP_004149402.1 (heat stress transcription factor B-3 [Cucumis sativus] >KAE8649359.1 hypothetical protein Csa_019122 [Cucumis sativus]) HSP 1 Score: 385.2 bits (988), Expect = 4.2e-103 Identity = 204/243 (83.95%), Postives = 217/243 (89.30%), Query Frame = 0
BLAST of Clc04G03850 vs. NCBI nr
Match: XP_022928625.1 (heat stress transcription factor B-3 [Cucurbita moschata]) HSP 1 Score: 373.6 bits (958), Expect = 1.3e-99 Identity = 208/248 (83.87%), Postives = 215/248 (86.69%), Query Frame = 0
BLAST of Clc04G03850 vs. NCBI nr
Match: XP_022967894.1 (heat stress transcription factor B-3 [Cucurbita maxima]) HSP 1 Score: 373.2 bits (957), Expect = 1.6e-99 Identity = 209/248 (84.27%), Postives = 215/248 (86.69%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy Swiss-Prot
Match: O22230 (Heat stress transcription factor B-3 OS=Arabidopsis thaliana OX=3702 GN=HSFB3 PE=1 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 5.6e-50 Identity = 124/242 (51.24%), Postives = 152/242 (62.81%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy Swiss-Prot
Match: P22335 (Heat shock factor protein HSF24 OS=Solanum peruvianum OX=4082 GN=HSF24 PE=2 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 8.1e-41 Identity = 95/194 (48.97%), Postives = 122/194 (62.89%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy Swiss-Prot
Match: Q6Z9C8 (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2B PE=2 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 2.7e-36 Identity = 93/224 (41.52%), Postives = 123/224 (54.91%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy Swiss-Prot
Match: Q652B0 (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2C PE=2 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 1.3e-35 Identity = 92/231 (39.83%), Postives = 119/231 (51.52%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy Swiss-Prot
Match: Q7XRX3 (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2A PE=2 SV=2) HSP 1 Score: 147.1 bits (370), Expect = 2.5e-34 Identity = 97/226 (42.92%), Postives = 127/226 (56.19%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy TrEMBL
Match: A0A5D3CGR4 (Heat stress transcription factor B-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00700 PE=3 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 3.1e-104 Identity = 204/243 (83.95%), Postives = 220/243 (90.53%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy TrEMBL
Match: A0A6J1ES59 (heat stress transcription factor B-3 OS=Cucurbita moschata OX=3662 GN=LOC111435477 PE=3 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 6.1e-100 Identity = 208/248 (83.87%), Postives = 215/248 (86.69%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy TrEMBL
Match: A0A6J1HY14 (heat stress transcription factor B-3 OS=Cucurbita maxima OX=3661 GN=LOC111467268 PE=3 SV=1) HSP 1 Score: 373.2 bits (957), Expect = 8.0e-100 Identity = 209/248 (84.27%), Postives = 215/248 (86.69%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy TrEMBL
Match: A0A6J1DH46 (heat stress transcription factor B-3-like OS=Momordica charantia OX=3673 GN=LOC111020012 PE=3 SV=1) HSP 1 Score: 349.7 bits (896), Expect = 9.4e-93 Identity = 194/254 (76.38%), Postives = 210/254 (82.68%), Query Frame = 0
BLAST of Clc04G03850 vs. ExPASy TrEMBL
Match: A0A5A7UM52 (Heat stress transcription factor B-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00640 PE=3 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 2.2e-89 Identity = 172/207 (83.09%), Postives = 189/207 (91.30%), Query Frame = 0
BLAST of Clc04G03850 vs. TAIR 10
Match: AT2G41690.1 (heat shock transcription factor B3 ) HSP 1 Score: 199.1 bits (505), Expect = 4.0e-51 Identity = 124/242 (51.24%), Postives = 152/242 (62.81%), Query Frame = 0
BLAST of Clc04G03850 vs. TAIR 10
Match: AT4G36990.1 (heat shock factor 4 ) HSP 1 Score: 145.6 bits (366), Expect = 5.2e-35 Identity = 83/177 (46.89%), Postives = 113/177 (63.84%), Query Frame = 0
BLAST of Clc04G03850 vs. TAIR 10
Match: AT5G62020.1 (heat shock transcription factor B2A ) HSP 1 Score: 143.3 bits (360), Expect = 2.6e-34 Identity = 97/268 (36.19%), Postives = 140/268 (52.24%), Query Frame = 0
BLAST of Clc04G03850 vs. TAIR 10
Match: AT4G17750.1 (heat shock factor 1 ) HSP 1 Score: 141.7 bits (356), Expect = 7.5e-34 Identity = 79/188 (42.02%), Postives = 114/188 (60.64%), Query Frame = 0
BLAST of Clc04G03850 vs. TAIR 10
Match: AT1G46264.1 (heat shock transcription factor B4 ) HSP 1 Score: 138.7 bits (348), Expect = 6.3e-33 Identity = 82/203 (40.39%), Postives = 107/203 (52.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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