Clc04G03250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G03250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr04: 10216119 .. 10219053 (-)
RNA-Seq Expression	Clc04G03250
Synteny	Clc04G03250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTTCTTCTTTTGCTCTCGCCTTCGTCTCGCTCGTCTCACACTTGACAGAGGAAAGAGAGAGCGAGAGCGAGACGAAGGCGAGAGCAAGAGAAGAAGAAGAAAACATCTTGCTCTCGCATTTGTTTCTTTTGTCTCTTTTGTCTCTTTCGTCTTGCTCGTCTCTGTCATCTCGCTTGTCTCGTTCGTCTCGCTTCCTTCCTCACTCACCTAGTCTTATCTCTCGCTCACCAGAGTTGGTCGCGTCAGATTTTGGACCAGAAGAAGAAGAAGAAGAGTTGCAGACAAAGAAGAAGAATCAGAGAAGAAGAAGATGCACGAGAAGAAGAAAAAAAAGGGAAAGGAAGAAAGGGAAAGAGAGGAAGTCACGAAGAAGAGAAAAGAAAAAAAGAAAAAAAACCCACGTTGGGCAAATCGCGAACCGTGTCCAAGATTTGCCTGCCATGTGGAGGGTAAATCGTGGACCGGGTCCATGATTTACATGCTATGTGGAAATCGTGGACCACGTCCACGATTTCGCTACCCTATTTTTATCAATACTTTCAACCCAACCCTACTTTTGTCATTATTTATTAAAATAACATTATTTTAAAAAAAATCATTAAATTGGGTTGTTTATATACCAAAATAAGCCAAATTATTTACGAATATAGAAAAATTTCATTGTCTATCAACGATAGACAACGATAGGTTGCGATTGACTTCTTTCACTTAGGTGATAGAAGTGATTGCGATCTATTGCCGATAGACAGTAAAATTTTTCTATATTTGTATATAGTTTGATATTTTTTCTATTTATAATAATTTTCCTACTAAATTTTTGTAATTTAGTTATAGAAAACAAGTAGATTATCATTTCAATTATTTTGTATAATATAATTAATTATTTGATAATATATATTATTTGAATTGCAAATAATTTTGTTTAATCAAAATTGTTAGATAATTTTTTTTTAAAAAAAAAAATCATTGTTATTGAGAAGCATGTGAGTCGAATGAAATAGCCTACAAGTCAAGCACAATGTCACGAACACAATATGAGACAAACAATCAGATAGAAATTGGCAAAAGAAGAAACATACAAAGATTGGTAATCAAGTTTGGTGTAACCATACCTACGTTTGGGGGACAGAGAGCCCAATGAAAAGAGCTTGAAATGCAAATGATCTTCACTCCTTGTTCACGTTGAAGTTAGAGACATAGAGTCTGACATATTAAAGTATTACCAGATTTTTCATGAATGAATCTCACTAAGTGTAGGAAGAGTAGTCATCAACACGCACAATTGCATATATATGTTGCCGAAACTCCCCACTTGCATAGTGATCCATCAAATCCATTTGAAGTAATTAAAGTGTAAGCCCCTACCTGACATTGGGAGATGGCAAGTTAAGAGGAGACTATGAGACGGGCATTGAATAGAGAAAGTTGGCCGAGTTGTGTGGGAGCAAAAGTGGCTAAGTGTTGGCCATTGTTGGTGGGACTATGTGTTGAGAGTATGTCTGAGGTTTGACGAGACCACTGGTAACTAAGCATTGAAGAGGGTAGTTTGGCATGGACGCAGATGTGAAGGAAGGCCACTAGGCGTTGAAGGCCACGAGGCGTTGAAGGCCACTATGTGTTGAAAGCCACTATGCGTTGAATGCTTGTCACACCCCACCCCGAACTATCCTCCCGTACCCCGAGACGGAGTGTAAGGACAGAGGTCACCGACTACCCTGTCACATAACCCACTGACACATTCACCTCACTTTCATTTATTCCTTCCTAGGACGGTAATACCATTAACATACTCTTGACAAACCTCGACTTCGATCGGTAATGGGAACTGTCATGCTACCTGAAAATGGAAAACATATAAAAAGGGTGAGCTAACAGCTCAGTGAGTAACAGTTTTCTGAAAACATTATACTTTAACTGTAAAACTGGTCAAACTCGCATAAAATATAACAATTCAAATCATATTATAACATGATCAAAAACCATTGTTATATCATACATATCTGTTTTGGTATAAATAATCAAAATCTCATTCATTTCAATACTTTTTCCCTAGTTGAGGCGGAGCAATGCTCTATGCTCCTTAACGACGATTTTCCTTAGCTATTTGGAGTAATCTCAACACATCAGCGTCGTATATACCTCTATGTGCACATAGGTTTTATATTCCGGGCTACCCACAATGCCTTCTCCGAGTCCCTGAGCATTGGGGTCCCATTTCCATATCCAGGCTACCCATCTGCCTTCTACGAGTCCCTCAGCATTGGGTACCTTTTTCTATACCCCGGCTACCTTTGGCCTTCTCCGAAGTCCCTCAGCCTCGGGTGCCTTTTCAAAGTTTTATAAAACACAATACATATTTTGGAAACATTATATCAATAACTCGTAAGTTAATCGTTTCCAAATCTATATCAACTAGCATGCTAAATTCAATTTTAAAGCTTTAATATCAAACAACATGCTTTTCGAACAAGTTTATTTCCAAATTTTTCATGAAATCATATAACACCATACTTTTCAGTAAAATCATGAAAACAAGTATCAATCAGCATACGTTTATTAACTGCTATCAAACAATCAGCATACTCAATGCTTTTCAATAAAACGCATGCATTTGTTCATTGAAAATTCACGAACGCACATTTCAAACCAATGATTTTAATCATACGGAACTCGTTTATATTTTGAAAGACGCAGGTGTTACTCACCTGTACTTGCCAAAGAATAATTCCTCCTTTATTTCCTCTTCCCAACCTTCTTGGACGCAGCGTTCTAACTAAGAAACGCAAGGCTCCATATTCCTCTGTCAACTCGGTTGAACGCAACCTTGCCCTTCAACGCAAGGTTGATAACTACCGCAAAGTGCAGCCCAACTCTTCTTACTTCTCTTTTGGATGCGTCGACCTTTCTTGGACGCAAGGTCCAACTTGA

mRNA sequence

ATGTCTTCTTCTTCTTTTGCTCTCGCCTTCGTCTCGCTCGTCTCACACTTGACAGAGGAAAGAGAGAGCGAGAGCGAGACGAAGGCGAGAGCAAGAGAAGAAGAAGAAAACATCTTGCTCTCGCATTTGTTTCTTTTGTCTCTTTTGTCTCTTTCGTCTTGCTCGTCTCTGTCATCTCGCTTGTCTCGTTCGTCTCGCTTCCTTCCTCACTCACCTAGTCTTATCTCTCGCTCACCAGAGTTGGTCGCGTCAGATTTTGGACCAGAAGAAGAAGAAGAAGAGTTGCAGACAAAGAAGAAGAATCAGAGAAGAAGAAGATGCACGAGAAGAAGAAAAAAAAGGGAAAGGAAGAAAGGGAAAGAGAGGAAGTCACGAAGAAGAGAAAAGAAAAAAAGAAAAAAAACCCACGTTGGGCAAATCGCGAACCGTGTCCAAGATTTGCCTGCCATGTGGAGGGTAAATCGTGGACCGGGTTTTATATTCCGGGCTACCCACAATGCCTTCTCCGAGTCCCTGAGCATTGGGGTCCCATTTCCATATCCAGGCTACCCATCTGCCTTCTACGAGTCCCTCAGCATTGGGTACCTTTTTCTATACCCCGGCTACCTTTGGCCTTCTCCGAAGTCCCTCAGCCTCGGCGTTCTAACTAAGAAACGCAAGGCTCCATATTCCTCTGTCAACTCGGTTGAACGCAACCTTGCCCTTCAACGCAAGGTTGATAACTACCGCAAAGTGCAGCCCAACTCTTCTTACTTCTCTTTTGGATGCGTCGACCTTTCTTGGACGCAAGGTCCAACTTGA

Coding sequence (CDS)

ATGTCTTCTTCTTCTTTTGCTCTCGCCTTCGTCTCGCTCGTCTCACACTTGACAGAGGAAAGAGAGAGCGAGAGCGAGACGAAGGCGAGAGCAAGAGAAGAAGAAGAAAACATCTTGCTCTCGCATTTGTTTCTTTTGTCTCTTTTGTCTCTTTCGTCTTGCTCGTCTCTGTCATCTCGCTTGTCTCGTTCGTCTCGCTTCCTTCCTCACTCACCTAGTCTTATCTCTCGCTCACCAGAGTTGGTCGCGTCAGATTTTGGACCAGAAGAAGAAGAAGAAGAGTTGCAGACAAAGAAGAAGAATCAGAGAAGAAGAAGATGCACGAGAAGAAGAAAAAAAAGGGAAAGGAAGAAAGGGAAAGAGAGGAAGTCACGAAGAAGAGAAAAGAAAAAAAGAAAAAAAACCCACGTTGGGCAAATCGCGAACCGTGTCCAAGATTTGCCTGCCATGTGGAGGGTAAATCGTGGACCGGGTTTTATATTCCGGGCTACCCACAATGCCTTCTCCGAGTCCCTGAGCATTGGGGTCCCATTTCCATATCCAGGCTACCCATCTGCCTTCTACGAGTCCCTCAGCATTGGGTACCTTTTTCTATACCCCGGCTACCTTTGGCCTTCTCCGAAGTCCCTCAGCCTCGGCGTTCTAACTAAGAAACGCAAGGCTCCATATTCCTCTGTCAACTCGGTTGAACGCAACCTTGCCCTTCAACGCAAGGTTGATAACTACCGCAAAGTGCAGCCCAACTCTTCTTACTTCTCTTTTGGATGCGTCGACCTTTCTTGGACGCAAGGTCCAACTTGA

Protein sequence

MSSSSFALAFVSLVSHLTEERESESETKARAREEEENILLSHLFLLSLLSLSSCSSLSSRLSRSSRFLPHSPSLISRSPELVASDFGPEEEEEELQTKKKNQRRRRCTRRRKKRERKKGKERKSRRREKKKRKKTHVGQIANRVQDLPAMWRVNRGPGFIFRATHNAFSESLSIGVPFPYPGYPSAFYESLSIGYLFLYPGYLWPSPKSLSLGVLTKKRKAPYSSVNSVERNLALQRKVDNYRKVQPNSSYFSFGCVDLSWTQGPT

Homology

The following BLAST results are available for this feature:

BLAST of Clc04G03250 vs.


Match Name	E-value	Identity	Description

BLAST of Clc04G03250 vs.


Match Name	E-value	Identity	Description

BLAST of Clc04G03250 vs.


Match Name	E-value	Identity	Description

BLAST of Clc04G03250 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G03250.1	Clc04G03250.1	mRNA