Clc04G01155 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G01155
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionIntegrase catalytic domain-containing protein
LocationClcChr04: 3235465 .. 3239703 (-)
RNA-Seq ExpressionClc04G01155
SyntenyClc04G01155
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGACAATATCGGTGATGAAGCTTCAATTGGTGCATTGTTGAATCCGTATTCCTTGCATCATTCTTTCACCTCAACCAGTGTTTTGGTTACTCAGCCGTTGATCGGTGCTTCCAATTATGGTTCTTGGAATCGTGCCATGATTATGGTTCTCTCAAGTAAGAACAAAGATGGTTTCGTTGATGGTAAGAAACCTTAAAGAACCAATTCGAAGGCATGGAAGTGCAACAACGACATTATCTCTTTGTGGATTCTAAATTATGTTTCGAAGGAGATCGCCACTAGTATTGTCTATACCGGTTCAGCTAAAGACATTAGGGATGAACTTTGAAATCGATTTAAGCAGACTAATGGACCAAGAATCTATCAATTACGGAAAGAACTCGTGACGACAAATCAATCTATACAAGAATGTACCTGTGGAGGAATGCAATCTTTTCTTGATCATCTTGATTCTAAATTTGTCATGATTTTCTTGATGGGACTAAATGAGATCTACACTACTCTACGTGCTCATACCTTAGTTATGAGTCCAATGCCTTCAATCACTAAAACATTTTCATTGGTAATTCAAGAGGAGTAGCAACGATTAGTTCGAAATAACAACTGATGCAATGACCTTAATTGCAGAAACAGAGAATGCTAAAAAGAAAAATCAGTTACGAAAGAAGGATTCTCAGCGACCTATTTGTACAAATTGTGGCATTAAAGGTCATGTAGTTGATAAATGCTACAAGCTTCATGGTTATCCCCCAGGATATAAATCAAGAATTAATGAGAATGCTGAAAATCCTCCACAAAATAGTTCTCAATCTACACCTACTGCAAACGCTGTTTCTCAACAAAATGACCCTCAATCTAATTTTTTCAGCAGTCTCAATACCAATCAGTACACTTAGCTTATGGAGATGCTTTCGTCTCACCTTCAAGCAACCAAAACCGAGCCCATCACAGCAGCAACAGCAACAACTCACACTGCAGGTATTTGTTCTCTAACCTTGCCTACAAATGCATCTCAGTCTAAGGAATGGATTCTAGATTCTGGCGCTTCTCGACATATCTGCAATGATCGTTCTTTATTTCAAAATTGGAATCAAGTTTTTGATATTGCAGTTGCTTTGCATAATGGTTTTCAAATTAAGGTTGACTATATTGGGAATGTTCGTGTATCTGAATCATTGATGTTGAATGATGTTCTCTTTTTACCAAAATTCGCTTACAACTTGATATCAGTGAGTTGCTTATTGAAATCTGCCTATAGCACTCAATTTTTGTGATGATTACTGCATCATACAGGACAGACTTTCCTTGAAGATGATTGGCAAGGTTAACAATAAACATGGACTCTATTTGCTCAACTTTATTGACAGCTCCAATCATCATACTACTGCTGGTGTTTCTTGTGCCATTTCTATTGAAACTTGGCATCACTTTTTGGACCATTTATCTCCTAAATGTTTATCCTTGTTAAAAGATACTTTGTCTTTACCAAGTTCTCTGTTACAATATGCTTGTCATTTATGTCCTTTAGCTAAACAACATAGACTATCCTTCAAGTCTAATAATCATGTTGCTGATAATGTTTTTGATTTAGTACATTGTGACGCTTGAGGACCCTTTAAACACTCGACTTATAGTGGATATAAATACTTTTTGACTATTGTTGATAATTGTTCTCGCTTCACATGGACTTATTTGATGCGTTCCAAATCTGATGCTTTGTATATTGTTCCACGCTTCATTGCTCTTGTCGAGACACATTTCTCCAAGACCATCAAAGTTTTTCGATCAGACAATGCACTAGAACTTCATTTTACTAATCTTTTTGCTGCAAAAGGAACGATTCATCAATTTTCTTGTGTAGAACGACCACAACAGAACTCTGTCGTTGAGAGAAAGCACCAACACCTTTTCAATGTTGCTCGAGCATTATTCTTCCAGTCTAGAGTTCCAATCAGATTTTGGGGGGATTGTATATTAACAGCAACATTCCTTATCAATCGAACCTCAATCCCCTTGTTGTCAAATAAGTCTCCCTTTGAAGTGTTATATGACAAAGATGTTAATTACCCTTCTTTAAGAGTGTTTGGATGTTTGTGTTATGCATCCATATTATCTGCTCATATAACAAAATTTGATCCACGAGCAACGCCTTGTATCTTCATTGGTTACCCCCCTAACATGAAAGGTTACAAACTCATTGACATAAAAAAGAGGACTATTTTTACATCAAGGGATGTTATTTTTCAAGAAGATTTATTTCCCTTTCACAGCTATCCTAAAGATAATCACAATGGTTTATCTCACATGTTGTCAAATCATGTTTTACCTCTTCCTATTCAAGGAACCTTATAGCAAAATAAGGAGAATCACACAGGTGTTGACATTTCTGATGAACTTAACCTTGGGAATACTCCTCATACAGCAGAAGAGCAAGTGGTTTTTAATGAAGGAATTGTGCAAAATCCTTCTACCACCATCACTACTGACTCCACTAAAATTATTGAGCCCAACAATATAGTTGAACCTAATGAAGCTGCCAATCCTCCACATGACATTACTGTTGGTCTAAGAAGATCAACAAGAAGGCATCAACCAGTTGGTTTTCTTCGAGATTACCATTGTAATTTGCTTCAAGGCCAAGTTTTGAACACCACAACTCTATATTCCATCAACAATTACTTGTCTTACGACAAACTATCTGCTTTACATCAGAACTTTATTTTCAATATATCATCAATTGTTTTGCCTTCTTATTATAATCAAGCTGTCAAGTTAGACTCTTGGAGAAAGGCCATGGATGAAGATATTAATGCTATGGAATGAATAAAAGCTTGGAGTATTGTTCCTCTACCTAATGGTCATCGTGTTATTGGTTGCAAATGGGTGTATCGTATTAAACATAAAGCTAATGGTTCTATAGATCGTTATAAGGCAGATATAATCAAAAAGAAGGAATCGATTTCATTGATACTTTCTCCCCAGTAGCAAAAATTGTTACAGTCAAGTTATTATTATCCTTGACTGCTTCTTTTGGATGGGATTTGGTGCAAATGGATATCAACAATGCCTTTCTAAATGGGGAGTTATTCGAAGAAGTTTATATGCAACTTCCTTTTGGATATTATCAAGATTTGAAATCATCCTCTAGCAACACACTTGTTTGCAAATTACATAAGTCTGTATATGGACTTAAACAGGCTCCCGTCAAAGGTTCACGAAGTTTTCATCAGTTTTGATTTTAGATGGCTTTTCTCAGTCGAAATCCAATTATTCCCTCTTTACAAAAGGCAGTGGTAGTTCCTTTATTGCTCTTTTGGTCTATGTAGATGATATCTTGATTATTGGACCATCCCCTACTGAAATCACAACTGTGAAAACTCTTCTCCGATCTCATTTCTTATTAAAAGATTTGGGGAATGCAAAATACTTCCTAGGCCTCGAATTATCACAGTCTACAATGGGAATTTACATCTCCCAAAGAAAATATCGTCTTCAAATATTGGAAGATAGTGGTTTTTTAGCAGTTAAACCAACATCTTTCCCATTTGCATCCAATTTAAAGTTGACTGCTACTGCTGGCATTCCATTGAATTTGGATGATGCTTCCTCCTATAGAAGATTGATTGGGAGCCTTCTATATCTACAAATATCACGACCAAATGTTTCCTTTGCAGTTCATAAACTTAGCCCATATGTTGCTAAACCATATTCTGAACATTTGTCTGCTGCTCATCACTTACTGCGCTATTTGAAAGGTACTGCTGGGCAAAGAATTTTCTTAGCTGCTACCAATAACTTCCAACTAAAAGCATATGTTGATTCTGATTGGGATTCATGCTTAGATACCAGAAGATTTGTTACCGATTTTTGCAAATTTTTGGGTGATTCATTGATATCTTGGAAGTCAAAGAAACAAGCTACCGTGTCAAGATCTTCAGCTGAAGCAGAATATCGAGCTTTTGCTATGGTTTCCAGTGAGCTGACTTGGGTCTCTCATGTTTTGAAAGATCTCCATATTAATTTCCCTGCACTAACTCTGGTTTTCTGTGACAATGCAGCTGTTGTTTCCATTGCCACTAATCCAACCTTTCATGAGTGCACTAAGCACATTAAGATCGATTGTCATTTTGTTCGGGACAAGATTATTAATGGAGCTTTGAAGATTTTGCCTGTTCGTTCTCATTCACAACTTGCAAACATGTTTACAAAACCCTTAAATATGCTCTTCGACTGA

mRNA sequence

ATGGGGGACAATATCGGTGATGAAGCTTCAATTGGTGCATTGTTGAATCCGTATTCCTTGCATCATTCTTTCACCTCAACCAGTGTTTTGGTTACTCAGCCGTTGATCGGTGCTTCCAATTATGGTTCTTGGAATCGTGCCATGATTATGGTTCTCTCAAGTAAGAACAAAGATGGTTTCGTTGATGAAACAGAGAATGCTAAAAAGAAAAATCAGTTACGAAAGAAGGATTCTCAGCGACCTATTTGTACAAATTGTGGCATTAAAGGTCATGTAGTTGATAAATGCTACAAGCTTCATGGTTATCCCCCAGGATATAAATCAAGAATTAATGAGAATGCTGAAAATCCTCCACAAAATAGTTCTCAATCTACACCTACTGCAAACGCTCAACCAAAACCGAGCCCATCACAGCAGCAACAGCAACAACTCACACTGCAGTCTAAGGAATGGATTCTAGATTCTGGCGCTTCTCGACATATCTGCAATGATCGTTCTTTATTTCAAAATTGGAATCAAGTTTTTGATATTGCAGTTGCTTTGCATAATGGTTTTCAAATTAAGGTTGACTATATTGGGAATGTTCGTGTATCTGAATCATTGATGTTGAATGATGTTCTCTTTTTACCAAAATTCGCTTACAACTTGATATCAGACAGACTTTCCTTGAAGATGATTGGCAAGGTTAACAATAAACATGGACTCTATTTGCTCAACTTTATTGACAGCTCCAATCATCATACTACTGCTGGTGTTTCTTGTGCCATTTCTATTGAAACTTGGCATCACTTTTTGGACCATTTATCTCCTAAATGTTTATCCTTGTTAAAAGATACTTTGTCTTTACCAAGACCCTTTAAACACTCGACTTATAGTGGATATAAATACTTTTTGACTATTGTTGATAATTGTTCTCGCTTCACATGGACTTATTTGATGCGTTCCAAATCTGATGCTTTGTATATTGTTCCACGCTTCATTGCTCTTGTCGAGACACATTTCTCCAAGACCATCAAAGTTTTTCGATCAGACAATGCACTAGAACTTCATTTTACTAATCTTTTTGCTGCAAAAGGAACGATTCATCAATTTTCTTGTGTAGAACGACCACAACAGAACTCTGTCGTTGAGAGAAAGCACCAACACCTTTTCAATGTTGCTCGAGCATTATTCTTCCAGTCTAGAGTTCCAATCAGATTTTGGGGGGATTGTATATTAACAGCAACATTCCTTATCAATCGAACCTCAATCCCCTTGTTGTCAAATAAGTCTCCCTTTGAAGTGTTATATGACAAAGATGTTAATTACCCTTCTTTAAGAGTGTTTGGATGTGTTGACATTTCTGATGAACTTAACCTTGGGAATACTCCTCATACAGCAGAAGAGCAAGTGGTTTTTAATGAAGGAATTGTGCAAAATCCTTCTACCACCATCACTACTGACTCCACTAAAATTATTGAGCCCAACAATATAGTTGAACCTAATGAAGCTGCCAATCCTCCACATGACATTACTGTTGGTCTAAGAAGATCAACAAGAAGGCATCAACCAGTTGGTTTTCTTCGAGATTACCATTGTAATTTGCTTCAAGGCCAAGTTTTGAACACCACAACTCTATATTCCATCAACAATTACTTGTCTTACGACAAACTATCTGCTTTACATCAGAACTTTATTTTCAATATATCATCAATTGTTTTGCCTTCTTATTATAATCAAGCTGTCAATATTGTTCCTCTACCTAATGGTCATCGTGTTATTGGTTGCAAATGGGTGTATCGCAGATATAATCAAAAAGAAGGAATCGATTTCATTGATACTTTCTCCCCAGTAGCAAAAATTGTTACAGTCAAGTTATTATTATCCTTGACTGCTTCTTTTGGATGGGATTTGGTGCAAATGGATATCAACAATGCCTTTCTAAATGGGGAGTTATTCGAAGAAGTTTATATGCAACTTCCTTTTGGATATTATCAAGATTTGAAATCATCCTCTAGCAACACACTTTCGAAATCCAATTATTCCCTCTTTACAAAAGGCAGTGGTAGTTCCTTTATTGCTCTTTTGGTCTATGTAGATGATATCTTGATTATTGGACCATCCCCTACTGAAATCACAACTGTGAAAACTCTTCTCCGATCTCATTTCTTATTAAAAGATTTGGGGAATGCAAAATACTTCCTAGGCCTCGAATTATCACAGTCTACAATGGGAATTTACATCTCCCAAAGAAAATATCGTCTTCAAATATTGGAAGATAGTGGTTTTTTAGCAGTTAAACCAACATCTTTCCCATTTGCATCCAATTTAAAGTTGACTGCTACTGCTGGCATTCCATTGAATTTGGATGATGCTTCCTCCTATAGAAGATTGATTGGGAGCCTTCTATATCTACAAATATCACGACCAAATGTTTCCTTTGCAGTTCATAAACTTAGCCCATATGTTGCTAAACCATATTCTGAACATTTGTCTGCTGCTCATCACTTACTGCGCTATTTGAAAGGTACTGCTGGGCAAAGAATTTTCTTAGCTGCTACCAATAACTTCCAACTAAAAGCATATGTTGATTCTGATTGGGATTCATGCTTAGATACCAGAAGATTTGTTACCGATTTTTGCAAATTTTTGGGTGATTCATTGATATCTTGGAAGTCAAAGAAACAAGCTACCGTGTCAAGATCTTCAGCTGAAGCAGAATATCGAGCTTTTGCTATGGTTTCCAGTGAGCTGACTTGGGTCTCTCATGTTTTGAAAGATCTCCATATTAATTTCCCTGCACTAACTCTGGTTTTCTGTGACAATGCAGCTGTTGTTTCCATTGCCACTAATCCAACCTTTCATGAGTGCACTAAGCACATTAAGATCGATTGTCATTTTGTTCGGGACAAGATTATTAATGGAGCTTTGAAGATTTTGCCTGTTCGTTCTCATTCACAACTTGCAAACATGTTTACAAAACCCTTAAATATGCTCTTCGACTGA

Coding sequence (CDS)

ATGGGGGACAATATCGGTGATGAAGCTTCAATTGGTGCATTGTTGAATCCGTATTCCTTGCATCATTCTTTCACCTCAACCAGTGTTTTGGTTACTCAGCCGTTGATCGGTGCTTCCAATTATGGTTCTTGGAATCGTGCCATGATTATGGTTCTCTCAAGTAAGAACAAAGATGGTTTCGTTGATGAAACAGAGAATGCTAAAAAGAAAAATCAGTTACGAAAGAAGGATTCTCAGCGACCTATTTGTACAAATTGTGGCATTAAAGGTCATGTAGTTGATAAATGCTACAAGCTTCATGGTTATCCCCCAGGATATAAATCAAGAATTAATGAGAATGCTGAAAATCCTCCACAAAATAGTTCTCAATCTACACCTACTGCAAACGCTCAACCAAAACCGAGCCCATCACAGCAGCAACAGCAACAACTCACACTGCAGTCTAAGGAATGGATTCTAGATTCTGGCGCTTCTCGACATATCTGCAATGATCGTTCTTTATTTCAAAATTGGAATCAAGTTTTTGATATTGCAGTTGCTTTGCATAATGGTTTTCAAATTAAGGTTGACTATATTGGGAATGTTCGTGTATCTGAATCATTGATGTTGAATGATGTTCTCTTTTTACCAAAATTCGCTTACAACTTGATATCAGACAGACTTTCCTTGAAGATGATTGGCAAGGTTAACAATAAACATGGACTCTATTTGCTCAACTTTATTGACAGCTCCAATCATCATACTACTGCTGGTGTTTCTTGTGCCATTTCTATTGAAACTTGGCATCACTTTTTGGACCATTTATCTCCTAAATGTTTATCCTTGTTAAAAGATACTTTGTCTTTACCAAGACCCTTTAAACACTCGACTTATAGTGGATATAAATACTTTTTGACTATTGTTGATAATTGTTCTCGCTTCACATGGACTTATTTGATGCGTTCCAAATCTGATGCTTTGTATATTGTTCCACGCTTCATTGCTCTTGTCGAGACACATTTCTCCAAGACCATCAAAGTTTTTCGATCAGACAATGCACTAGAACTTCATTTTACTAATCTTTTTGCTGCAAAAGGAACGATTCATCAATTTTCTTGTGTAGAACGACCACAACAGAACTCTGTCGTTGAGAGAAAGCACCAACACCTTTTCAATGTTGCTCGAGCATTATTCTTCCAGTCTAGAGTTCCAATCAGATTTTGGGGGGATTGTATATTAACAGCAACATTCCTTATCAATCGAACCTCAATCCCCTTGTTGTCAAATAAGTCTCCCTTTGAAGTGTTATATGACAAAGATGTTAATTACCCTTCTTTAAGAGTGTTTGGATGTGTTGACATTTCTGATGAACTTAACCTTGGGAATACTCCTCATACAGCAGAAGAGCAAGTGGTTTTTAATGAAGGAATTGTGCAAAATCCTTCTACCACCATCACTACTGACTCCACTAAAATTATTGAGCCCAACAATATAGTTGAACCTAATGAAGCTGCCAATCCTCCACATGACATTACTGTTGGTCTAAGAAGATCAACAAGAAGGCATCAACCAGTTGGTTTTCTTCGAGATTACCATTGTAATTTGCTTCAAGGCCAAGTTTTGAACACCACAACTCTATATTCCATCAACAATTACTTGTCTTACGACAAACTATCTGCTTTACATCAGAACTTTATTTTCAATATATCATCAATTGTTTTGCCTTCTTATTATAATCAAGCTGTCAATATTGTTCCTCTACCTAATGGTCATCGTGTTATTGGTTGCAAATGGGTGTATCGCAGATATAATCAAAAAGAAGGAATCGATTTCATTGATACTTTCTCCCCAGTAGCAAAAATTGTTACAGTCAAGTTATTATTATCCTTGACTGCTTCTTTTGGATGGGATTTGGTGCAAATGGATATCAACAATGCCTTTCTAAATGGGGAGTTATTCGAAGAAGTTTATATGCAACTTCCTTTTGGATATTATCAAGATTTGAAATCATCCTCTAGCAACACACTTTCGAAATCCAATTATTCCCTCTTTACAAAAGGCAGTGGTAGTTCCTTTATTGCTCTTTTGGTCTATGTAGATGATATCTTGATTATTGGACCATCCCCTACTGAAATCACAACTGTGAAAACTCTTCTCCGATCTCATTTCTTATTAAAAGATTTGGGGAATGCAAAATACTTCCTAGGCCTCGAATTATCACAGTCTACAATGGGAATTTACATCTCCCAAAGAAAATATCGTCTTCAAATATTGGAAGATAGTGGTTTTTTAGCAGTTAAACCAACATCTTTCCCATTTGCATCCAATTTAAAGTTGACTGCTACTGCTGGCATTCCATTGAATTTGGATGATGCTTCCTCCTATAGAAGATTGATTGGGAGCCTTCTATATCTACAAATATCACGACCAAATGTTTCCTTTGCAGTTCATAAACTTAGCCCATATGTTGCTAAACCATATTCTGAACATTTGTCTGCTGCTCATCACTTACTGCGCTATTTGAAAGGTACTGCTGGGCAAAGAATTTTCTTAGCTGCTACCAATAACTTCCAACTAAAAGCATATGTTGATTCTGATTGGGATTCATGCTTAGATACCAGAAGATTTGTTACCGATTTTTGCAAATTTTTGGGTGATTCATTGATATCTTGGAAGTCAAAGAAACAAGCTACCGTGTCAAGATCTTCAGCTGAAGCAGAATATCGAGCTTTTGCTATGGTTTCCAGTGAGCTGACTTGGGTCTCTCATGTTTTGAAAGATCTCCATATTAATTTCCCTGCACTAACTCTGGTTTTCTGTGACAATGCAGCTGTTGTTTCCATTGCCACTAATCCAACCTTTCATGAGTGCACTAAGCACATTAAGATCGATTGTCATTTTGTTCGGGACAAGATTATTAATGGAGCTTTGAAGATTTTGCCTGTTCGTTCTCATTCACAACTTGCAAACATGTTTACAAAACCCTTAAATATGCTCTTCGACTGA

Protein sequence

MGDNIGDEASIGALLNPYSLHHSFTSTSVLVTQPLIGASNYGSWNRAMIMVLSSKNKDGFVDETENAKKKNQLRKKDSQRPICTNCGIKGHVVDKCYKLHGYPPGYKSRINENAENPPQNSSQSTPTANAQPKPSPSQQQQQQLTLQSKEWILDSGASRHICNDRSLFQNWNQVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYNLISDRLSLKMIGKVNNKHGLYLLNFIDSSNHHTTAGVSCAISIETWHHFLDHLSPKCLSLLKDTLSLPRPFKHSTYSGYKYFLTIVDNCSRFTWTYLMRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALELHFTNLFAAKGTIHQFSCVERPQQNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTATFLINRTSIPLLSNKSPFEVLYDKDVNYPSLRVFGCVDISDELNLGNTPHTAEEQVVFNEGIVQNPSTTITTDSTKIIEPNNIVEPNEAANPPHDITVGLRRSTRRHQPVGFLRDYHCNLLQGQVLNTTTLYSINNYLSYDKLSALHQNFIFNISSIVLPSYYNQAVNIVPLPNGHRVIGCKWVYRRYNQKEGIDFIDTFSPVAKIVTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFGYYQDLKSSSSNTLSKSNYSLFTKGSGSSFIALLVYVDDILIIGPSPTEITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSGFLAVKPTSFPFASNLKLTATAGIPLNLDDASSYRRLIGSLLYLQISRPNVSFAVHKLSPYVAKPYSEHLSAAHHLLRYLKGTAGQRIFLAATNNFQLKAYVDSDWDSCLDTRRFVTDFCKFLGDSLISWKSKKQATVSRSSAEAEYRAFAMVSSELTWVSHVLKDLHINFPALTLVFCDNAAVVSIATNPTFHECTKHIKIDCHFVRDKIINGALKILPVRSHSQLANMFTKPLNMLFD
Homology
[Close]
BLAST of Clc04G01155 vs. NCBI nr
Match: KAG7578768.1 (GAG-pre-integrase domain [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 696.4 bits (1796), Expect = 3.5e-196
Identity = 442/1211 (36.50%), Postives = 612/1211 (50.54%), Query Frame = 0 

Query: 76   KDSQRPICTNCGIKGHVVDKCYKLHGYPPGYKSRINENAENPPQNSSQSTPT-------- 135
            K  QRP+CT CG++GH+V KCYKLHGYP GYKS       NP   ++Q+TP+        
Sbjct: 277  KPRQRPVCTYCGLQGHLVTKCYKLHGYPLGYKS------SNPSYGNTQNTPSTQPFAPKQ 336

Query: 136  -----------------------------------------------------ANAQPKP 195
                                                                 +NA  + 
Sbjct: 337  FSPRPPMSSQQQYNPQFNNSSRMQGQGQRGQRDNVVGNVITNSPAVHDHFHQVSNALAQL 396

Query: 196  SPSQQQQQQLTLQSK-------------------------------------EWILDSGA 255
            SP Q +Q    L SK                                      WI+DSGA
Sbjct: 397  SPDQIEQLASQLNSKATCQTPSINEAHGVNYASTSAGYFVCSTILESCLNFTAWIIDSGA 456

Query: 256  SRHICNDRSLFQNWNQVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYNLI 315
            + H+C + SLF + N + +  V L N  QI ++  G V++S+ L+L +VLF+P F  NLI
Sbjct: 457  TTHVCCNLSLFDDINSISETTVKLPNSTQIAINQSGTVKLSDKLLLRNVLFIPSFHMNLI 516

Query: 316  SDRLSLK----------------------MIGKVNNKHGLYLLNF-IDSSNHHTTAGVSC 375
            S    L+                      MIGK   ++ LY L+    SS   ++  + C
Sbjct: 517  SVSSLLQDCAYSVNFFPSFCTIQEFTRGLMIGKGRLENKLYFLDLESPSSQSPSSTSLVC 576

Query: 376  AISI----ETWHHFLDHLSPKCLSLLKDTLSLPR-------------------------- 435
             +++      WH  L H S   L  L + LS+ +                          
Sbjct: 577  NLNVSESSSLWHSRLGHPSFPKLQALSEDLSISKSKLKDWSHCKTCHLAKQKRLSFPSLN 636

Query: 436  ----------------PFKHSTYSGYKYFLTIVDNCSRFTWTYLMRSKSDALYIVPRFIA 495
                            PF   ++  +KYFLT+VD+C+R TW YL+++KSD   I P F+ 
Sbjct: 637  NISKQPFDLVHMDVWGPFSVVSHEVFKYFLTLVDDCTRVTWIYLLKAKSDVHQIFPAFLN 696

Query: 496  LVETHFSKTIKVFRSDNALELHFTNLFAAKGTIHQFSCVERPQQNSVVERKHQHLFNVAR 555
             VET ++  +K  RSDNA EL FT+L  +KG  H FSCV+ PQQNSVVERKHQH+ NVAR
Sbjct: 697  SVETQYNNKVKAIRSDNAPELSFTSLLQSKGIFHFFSCVDTPQQNSVVERKHQHILNVAR 756

Query: 556  ALFFQSRVPIRFWGDCILTATFLINRTSIPLLSNKSPFEVLYDKDVNYPSLRVFGCVDIS 615
            AL FQS +PI++W DCI T+ +LINRT  PLL+NK+PFE+L +K   Y  L+ FGC+   
Sbjct: 757  ALLFQSNIPIQYWSDCIRTSVYLINRTPSPLLNNKTPFELLMNKKPKYSHLKSFGCLCYV 816

Query: 616  DE-----------------------------LNLGNTPHTAEEQVV-------------- 675
                                           LNL     +    V+              
Sbjct: 817  STYPKDRHKFTPRAEASVFLGYPSGYKGYKVLNLETHSISISRNVIFHEDIFPFHSSDLA 876

Query: 676  ------FNEGIVQNPSTTITTDSTKIIEP----NNIVEPNEAANPPHD--ITVGLRRSTR 735
                  FN  I+  P    T+ S  +  P    N+++  N  ++   D  I V   R  R
Sbjct: 877  PSTLDLFNSNILPLPLPDTTSSSIPVQHPFPTNNDVLSDNSGSSVDSDNTIPVTTNRPKR 936

Query: 736  RHQPVGFLRDYHCNLLQG-QVLNTTTLYSINNYLSYDKLSALHQNFIFNISSIVLPSYYN 795
              +   +L DYHCNL+     ++  T + +++ L Y KL+  +Q FI NIS+   P  + 
Sbjct: 937  NIRAPSYLADYHCNLVHDLPTVSGNTAHPLSSVLDYTKLNPHYQQFILNISAESEPKTFL 996

Query: 796  QAV----------------------NIVPLPNGHRVIGCKWVY----------------- 855
            +AV                      ++V LP G + IGC+WVY                 
Sbjct: 997  EAVRSEKWHGPMNEELQTCVDTGTFSVVSLPAGKQPIGCRWVYKIKHNADGTIDRYRARL 1056

Query: 856  --RRYNQKEGIDFIDTFSPVAKIVTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYM 915
              + Y Q+EG+D+IDTFSPVAK+VTVKLLL L+A  GW L QMD+ NAFL+G+L EE+YM
Sbjct: 1057 VAKGYTQQEGVDYIDTFSPVAKLVTVKLLLDLSAKQGWSLTQMDVTNAFLHGDLEEEIYM 1116

Query: 916  QLPFGY---------------------------------YQDLKSSSSNTLSKSNYSLFT 975
             LP GY                                 + D+  ++  T S+S+++LF 
Sbjct: 1117 DLPPGYTPPPGETLPPNAVWRLHKSLYGLKQASRQWNKKFSDVLLAAGFTQSESDHTLFV 1176

Query: 976  KGSGSSFIALLVYVDDILIIGPSPTEITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMG 990
            K   + FIALLVYVDDILI   S   ++ +K++L + F LKDLG AKYFLGLE++++  G
Sbjct: 1177 KHVNNIFIALLVYVDDILIASNSDAAVSDLKSVLAASFKLKDLGQAKYFLGLEIARNKSG 1236

[Close]
BLAST of Clc04G01155 vs. NCBI nr
Match: RVW51959.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 693.3 bits (1788), Expect = 3.0e-195
Identity = 424/1071 (39.59%), Postives = 577/1071 (53.87%), Query Frame = 0 

Query: 75   KKDSQRPICTNCGIKGHVVDKCYKLHGYPPGYK--------SRINENAE----------- 134
            K    R  C++CG +GH  DKCYKL GYPPG+K        S +  N+E           
Sbjct: 198  KTRRDRITCSHCGFQGHTKDKCYKLVGYPPGWKFKNKGPNSSSMANNSEVLESLNAGSSE 257

Query: 135  ------------------NPPQNSSQSTPTANAQPKPSPSQQQQQQLTLQSKEWILDSGA 194
                                  +S+ S  T N+   PS S     ++ +Q+K WI+DSGA
Sbjct: 258  STVSSLTTMQCQQLIQLLTNQLSSTSSASTENSSTGPSVSNFAGNKVKIQNKGWIIDSGA 317

Query: 195  SRHICNDRSLFQNWNQVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYNLI 254
            + H+CND SLF +   V ++ V L  G  + +D +G+V +S+ + L +VLF+P F YNL+
Sbjct: 318  THHVCNDISLFDSSIDVQNVRVTLPTGITVPIDRVGSVILSKDVKLLNVLFVPTFRYNLL 377

Query: 255  SDRLSLKMIGKVNNKHGLYLL---NFIDSSNHHTTAGVSCAISIETWHHFLDH------- 314
            S+    KMIGK + K  LY L   +F+        + +  +  +  WH  L H       
Sbjct: 378  SEPSRGKMIGKGSRKGQLYQLDFDSFVADKAFVAASRIPTSNILSLWHSRLGHPSFSRLK 437

Query: 315  -------------LSP---------KCLSLLK---------DTLSLP--RPFKHSTYSGY 374
                         L+P         +CL  +          D L L    PF   +  GY
Sbjct: 438  GLQSILDFDSSFDLTPCNVCPLAKQRCLPYISLNKRCSSTFDLLHLDIWGPFSVGSVEGY 497

Query: 375  KYFLTIVDNCSRFTWTYLMRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALELHFTNL 434
            K+FLTIVD+ SR TW Y++++KS+    +P F A V+  F K +K  RSDNA EL  +N 
Sbjct: 498  KFFLTIVDDYSRVTWVYMLKNKSEVQKYIPDFFAFVKKQFGKEVKAIRSDNAPELFLSNF 557

Query: 435  FAAKGTIHQFSCVERPQQNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTATFLINR 494
            + + G IH  SCVE PQQNSVVERKHQH+ NVARAL FQS +P+ +W DCILTA +LINR
Sbjct: 558  YHSLGVIHYRSCVETPQQNSVVERKHQHILNVARALLFQSSLPVCYWSDCILTAVYLINR 617

Query: 495  TSIPLLSNKSPFEVLYDKDVNYPSLRVFGCVDISDELNLGNTPHTAEEQVVFNEGIVQNP 554
            T  P L+NK+PFE+L+DK  +Y  LRVFGC+     L    T  +   +       +  P
Sbjct: 618  TPSPFLNNKTPFEILHDKLPDYSHLRVFGCLCYVSTLKANRTKFSPRAKAAV---FLVLP 677

Query: 555  STTITTDSTKIIEPNNIVEPNEAANPPHDITVGLRRSTRRHQPVGFLRDYHCNLLQ--GQ 614
                  D +  + P  I +P     P         R TR  +   +L+DYHC+L+     
Sbjct: 678  CIAADNDQSSSVLPRVISQPPLQVAPS-------SRPTRVSKQPSYLKDYHCSLINSVAH 737

Query: 615  VLNTTTLYSINNYLSYDKLSALHQNFIFNISSIVLPSYY--------------------- 674
            V   +T + I ++LSYDKLS  ++ F  ++S I  PS +                     
Sbjct: 738  VETHSTSHPIQHFLSYDKLSPSYKLFSLSVSIISEPSSFAKAAEIPEWRAAMDCELEALE 797

Query: 675  -NQAVNIVPLPNGHRVIGCKWVY-------------------RRYNQKEGIDFIDTFSPV 734
             N+  +IV LP G   +GCKWV+                   + Y Q+EGID++DTFSPV
Sbjct: 798  ENKTWSIVSLPVGKHPVGCKWVHKVKHKADGTIERYKARLVAKGYTQREGIDYVDTFSPV 857

Query: 735  AKIVTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFGYYQDLKSSSSNTL-- 794
            AK+VTVKLLL++ A  GW L Q+D+NNAFL+G+L EEVYM+LP GY +  +S  SN +  
Sbjct: 858  AKLVTVKLLLAIAAVKGWHLSQLDVNNAFLHGDLNEEVYMKLPPGYNRKGESLPSNAVCL 917

Query: 795  ------------------------------SKSNYSLFTKGSGSSFIALLVYVDDILIIG 854
                                          S S++SLF K     FIALLVYVDD     
Sbjct: 918  LHKSLYGLKQASRQWFSKFSTAIMGLGFSQSPSDHSLFIKNVDGLFIALLVYVDD----- 977

Query: 855  PSPTEITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSGFLAV 914
                                DLG+ KYFLGLE+++S+ GI +SQRKY L +L D G+L  
Sbjct: 978  --------------------DLGDVKYFLGLEIAKSSTGICVSQRKYVLDLLSDFGYLGC 1037

Query: 915  KPTSFPFASNLKLTATAGIPLNLDDASSYRRLIGSLLYLQISRPNVSFAVHKLSPYVAKP 974
            K  S P  +N+KL+   G+  +L D S YRRL+G LLYL ++RP++S+AV +LS ++++P
Sbjct: 1038 KAASTPMEANVKLSMDEGV--DLPDVSLYRRLLGKLLYLTLTRPDISYAVGRLSQFISRP 1097

Query: 975  YSEHLSAAHHLLRYLKGTAGQRIFLAATNNFQLKAYVDSDWDSCLDTRRFVTDFCKFLGD 991
               HL AA  +LRYLKG  G  +F    +  +L AY DSDW  C D+RR VT FC FLG+
Sbjct: 1098 KLPHLHAAQRILRYLKGNPGMGLFFPNNSELRLMAYTDSDWARCPDSRRSVTGFCVFLGN 1157

[Close]
BLAST of Clc04G01155 vs. NCBI nr
Match: KZV25004.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Dorcoceras hygrometricum])

HSP 1 Score: 686.8 bits (1771), Expect = 2.8e-193
Identity = 427/1123 (38.02%), Postives = 606/1123 (53.96%), Query Frame = 0 

Query: 80   RPICTNCGIKGHVVDKCYKLHGYPPG---YKSRINENAENPPQNSSQS---TPTANAQPK 139
            R IC++C  + H VDKCYKLHGYPPG   +KS+I++ + +  Q SS S     T      
Sbjct: 275  RIICSHCHFRNHTVDKCYKLHGYPPGHPKFKSQISQGSAHAHQASSSSETHQETQQIDHS 334

Query: 140  PSPSQQQQQQL--------------------------------------TLQSKEWILDS 199
             S +Q Q +QL                                       +  K+WI+D+
Sbjct: 335  DSLTQSQCKQLIEFLSSKLQTRQNLLMEHQPETTVSCLTGICSATSHIPAITRKDWIMDT 394

Query: 200  GASRHICNDRSLFQNWNQVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYN 259
            GA+ HIC   S+F++ ++     V L N   I V   G V V+ +L+L +VL++P F +N
Sbjct: 395  GATHHICCSLSMFKS-SRAIQSKVVLPNTLTIPVTIAGTVAVTSNLVLQNVLYVPVFQFN 454

Query: 260  LIS----------------------DRLSLKMIGKVNNKHGLYLL----NFIDSSNHHTT 319
            L+S                      D   ++MIG       LY+L     F+ S   +T 
Sbjct: 455  LLSVSSLTDNHNCSVSFMSDSCKIQDISQIRMIGMGKRIGNLYVLQQPDRFLPSYICNTF 514

Query: 320  AGVSCAISIETWHHFLDHLSPKCLSLLKDTLSLPR------------------------- 379
               S     E WH  + H S   LS LK+ L++                           
Sbjct: 515  VSNS-----ELWHRRMGHPSFNKLSSLKNVLNIENTDIVNICHSCHLSKQRRLPLASRNN 574

Query: 380  ---------------PFKHSTYSGYKYFLTIVDNCSRFTWTYLMRSKSDALYIVPRFIAL 439
                           PF  ++  G+++F TIVD+ SR+TW Y+++SKSD L I P F  +
Sbjct: 575  ISARIFELLHIDTWGPFSQTSVDGFRFFFTIVDDHSRYTWVYMLKSKSDVLSIFPDFCRM 634

Query: 440  VETHFSKTIKVFRSDNALELHFTNLFAAKGTIHQFSCVERPQQNSVVERKHQHLFNVARA 499
            V T F  T+K  RSDNA EL F + FA  G  H  SCVERPQQNSVVERKHQH+ NVARA
Sbjct: 635  VSTQFGVTVKSVRSDNAPELGFADFFAKAGITHYHSCVERPQQNSVVERKHQHILNVARA 694

Query: 500  LFFQSRVPIRFWGDCILTATFLINRTSIPLLSNKSPFEVLYDKDVNYPSLRVFGCVDISD 559
            L FQS +P+ +W DCI T+ +LINRT  P+L++K+PFE+L+ K  +Y  L+VFGC+  + 
Sbjct: 695  LLFQSHIPLDYWCDCINTSVYLINRTPSPILAHKTPFELLHGKLPSYSHLKVFGCLCYAS 754

Query: 560  E-----------------------------LNLGNTPHTAEEQVVFNEGI--VQNPSTTI 619
                                          LNL          V+F+E     QN S   
Sbjct: 755  TLLSSRHKFSPRAIRCVFIGYPPGYKGYKLLNLETNEIFISRDVIFHENTFPYQNTSPMS 814

Query: 620  TTDSTKIIEPNNIVEPNEAANPPHDITVGLRRSTRRHQPVGFLRDYHCNLLQGQVLNTTT 679
             +D T  + P++ + P+  A+          R++R H     LRDYHC  +     +T+T
Sbjct: 815  LSDMTFEVSPSSQITPSIPADAQQH-----SRTSRPHNTPSHLRDYHCYSI-STPCSTST 874

Query: 680  LYSINNYLSYDKLSALHQNFIFNISSIVLPSYYNQAV----------------------N 739
             + I+  ++Y KLS+ H+ F+ NISSI+ P+ ++QAV                      +
Sbjct: 875  AHPIHPLVNYSKLSSSHRAFVQNISSILEPTTFSQAVSLPEWRQAMDEELKALELNHTWS 934

Query: 740  IVPLPNGHRVIGCKWVYRR-------------------YNQKEGIDFIDTFSPVAKIVTV 799
            IV LP G   +GC+WVY+                    Y Q+EG+D+++TFSPVAK+VTV
Sbjct: 935  IVSLPQGKSAVGCRWVYKAKFAADGSLQRYKARLVAKGYTQQEGLDYLETFSPVAKLVTV 994

Query: 800  KLLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFGYYQD----------------- 859
            + LL+L A  GW L+Q+D+NNAFL+G+L EEVYM LP G+  +                 
Sbjct: 995  RTLLALAAVRGWFLIQLDVNNAFLHGDLTEEVYMTLPPGFCSEGELPSRAVCKLHKSIYG 1054

Query: 860  LKSSS-------SNTL-------SKSNYSLFTKGSGSSFIALLVYVDDILIIGPSPTEIT 919
            LK +S       S+TL       S ++ SLF +   + F+AL+VYVDDI+I        +
Sbjct: 1055 LKQASRQWFAKFSSTLLSIGFIQSHADNSLFIRSDKNIFLALVVYVDDIVIATNDQNAAS 1114

Query: 920  TVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSGFLAVKPTSFPF 979
             +K  L S F LKDLGN KYFLG+E+++ST G+ I QR Y + +L ++G L  KP + P 
Sbjct: 1115 ELKDFLNSKFKLKDLGNLKYFLGIEVARSTRGVSICQRNYAMTLLTEAGLLGCKPRTTPM 1174

Query: 980  ASNLKLTATAGIPLNLDDASSYRRLIGSLLYLQISRPNVSFAVHKLSPYVAKPYSEHLSA 990
             +N KL   +G  L+  D +SYRRLIG LLYL I+RP++ FAV+KLS YV+ P   H+ A
Sbjct: 1175 EANTKLAQDSGEMLS--DPASYRRLIGRLLYLTITRPDLVFAVNKLSQYVSMPRIPHMEA 1234

[Close]
BLAST of Clc04G01155 vs. NCBI nr
Match: RVW21404.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 667.9 bits (1722), Expect = 1.3e-187
Identity = 422/1064 (39.66%), Postives = 583/1064 (54.79%), Query Frame = 0 

Query: 75   KKDSQRPICTNCGIKGHVVDKCYKLHGYPPGYK--------SRINENAE----------- 134
            K    R  C+ CG +GH+ DKCYKL GYPPG+K        S +  N+E           
Sbjct: 266  KTRRDRITCSYCGFQGHIKDKCYKLVGYPPGWKFKNKGPNSSSMANNSEVLESLNAGSSE 325

Query: 135  ------------------NPPQNSSQSTPTANAQPKPSPSQQQQQQLTLQSKEWILDSGA 194
                                  +S+ S  T N+   PS S     ++ +Q+K WI++SGA
Sbjct: 326  YTVSSLTTMQCQQLIQLLTNQLSSTSSASTENSSTGPSVSNFAGNKVKIQNKGWIIESGA 385

Query: 195  SRHICNDRSLFQNWNQVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYNLI 254
            + H+CND SLF +   V ++ V L  G  + +D +G+V +S+ + L +VLF+P F YNL+
Sbjct: 386  THHVCNDISLFDSSIAVQNVRVTLPTGITVPIDKVGSVILSKDVKLLNVLFVPTFRYNLL 445

Query: 255  SDRLSLKMIGKVNNK-------------------------HGLYLLNFIDSSNHHTTAGV 314
            S+    KMIGK + K                          GL  +   DSS   T   V
Sbjct: 446  SEPSRGKMIGKGSRKASRIPTSNILSLWHSRLGHPSFSRLKGLQSVLDFDSSFDLTPCNV 505

Query: 315  SCAISIETWHHFLDHLSPKCLSLLKDTLSLP--RPFKHSTYSGYKYFLTIVDNCSRFTWT 374
             C ++ +    ++  L+ +C S   D L L    PF   +  GYK+FLTIVD+ SR TW 
Sbjct: 506  -CPLAKQRCLPYIS-LNKRCSSSF-DLLHLDIWGPFSVGSVEGYKFFLTIVDDHSRVTWV 565

Query: 375  YLMRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALELHFTNLFAAKGTIHQFSCVERP 434
            Y++++KS+    +P F A V+  F K +K  RSDNA EL  +N + + G IH  SCVE P
Sbjct: 566  YMLKNKSEVQKYIPDFFAFVKKQFGKEVKAIRSDNAPELFLSNFYHSLGVIHYRSCVETP 625

Query: 435  QQNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTATFLINRTSIPLLSNKSPFEVLY 494
            QQNSVVERKHQH+ NVARAL FQS +PI +W DCILTA +LINRT  P L+NK+PFE+L+
Sbjct: 626  QQNSVVERKHQHILNVARALLFQSSLPICYWSDCILTAVYLINRTPSPFLNNKTPFEILH 685

Query: 495  DKDVNYPSLRVFGCVDISDELNLGNTPH-----------------------------TAE 554
            DK  +Y  LRVFGC+     L    T                               +  
Sbjct: 686  DKLPDYSHLRVFGCLCYVSTLKANRTKFSPRAKAAVFLGYPFGFKGYKLLDIETRSISIS 745

Query: 555  EQVVFNEGIV----QNP--STTITTD--STKII-------EPNNIVEPNEAANPPHDITV 614
              V+F+E I      NP  S  I++D    +++       + ++ V P   + PP  +  
Sbjct: 746  RNVIFHEEIFPFSKTNPCSSPDISSDLFHDRVLPCIAADNDQSSSVLPRVVSKPPLQVAP 805

Query: 615  GLRRSTRRHQPVGFLRDYHCNLLQ--GQVLNTTTLYSINNYLSYDKLSALHQNFIFNISS 674
               R TR  +   +L+DYHC+L+     V   +T + I ++LSYDKLS+ ++ F  ++S 
Sbjct: 806  S-SRPTRVSKQSSYLKDYHCSLINFVAHVETHSTSHPIQHFLSYDKLSSSYKLFSLSVSI 865

Query: 675  IVLPSYYNQAVNIVPLPNGHRVIGCKWVYRRYNQKEGIDFIDTFSP------VAKIVTVK 734
            I  P  + +A  I   P     + C+      N+   I  +   S       +AK+VTVK
Sbjct: 866  ISEPDSFAKAAEI---PEWRAAMDCELEALEDNKTWSIVSLPVGSTPLAVNGLAKLVTVK 925

Query: 735  LLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFGYYQDLKSSSSNTL--------- 794
            LLL++ A  GW L Q+D+NNAFL+G+L EEVYM+LP GY +  +S  SN +         
Sbjct: 926  LLLAIAAVKGWHLSQLDVNNAFLHGDLNEEVYMKLPPGYNRKGESLPSNAVCLLHKSLYG 985

Query: 795  -----------------------SKSNYSLFTKGSGSSFIALLVYVDDILIIGPSPTEIT 854
                                   S SN+SLF K     FIALLVYVDD++I   +   I 
Sbjct: 986  LKQASRQWFSKFSTAIMGLGFSQSPSNHSLFIKNVDGLFIALLVYVDDVIIASNNQGAIA 1045

Query: 855  TVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSGFLAVKPTSFPF 914
             +K+ L   F LKDLG+ KYFLGLE+++S+ GI +SQRKY L +L D G+L  K  S P 
Sbjct: 1046 DLKSELNKLFKLKDLGDVKYFLGLEIAKSSTGICVSQRKYVLDLLSDFGYLGCKAASTPM 1105

Query: 915  ASNLKLTATAGIPLNLDDASSYRRLIGSLLYLQISRPNVSFAVHKLSPYVAKPYSEHLSA 974
             +N+KL+   G+  +L D S YRRL+G LLYL ++RP++S AV +LS ++++P   HL A
Sbjct: 1106 EANVKLSMDEGV--DLPDVSLYRRLLGKLLYLTLTRPDISSAVGRLSQFISRPKLPHLHA 1165

Query: 975  AHHLLRYLKGTAGQRIFLAATNNFQLKAYVDSDWDSCLDTRRFVTDFCKFLGDSLISWKS 991
            A  +LRYLKG  G  +F  + +  +L AY DSDW  C D+RR VT FC FLG+SL+SWKS
Sbjct: 1166 AQRILRYLKGNPGMGLFFPSNSELRLMAYTDSDWAHCPDSRRSVTGFCVFLGNSLVSWKS 1225

[Close]
BLAST of Clc04G01155 vs. NCBI nr
Match: KYP61022.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 667.9 bits (1722), Expect = 1.3e-187
Identity = 430/1125 (38.22%), Postives = 595/1125 (52.89%), Query Frame = 0 

Query: 57   KDGFVDETENAKKKNQLRKKDSQRPICTNCGIKGHVVDKCYKLHGYPPGYKSRINENAEN 116
            K GF   T  + K +  R     R ICT+CG  GH ++ CY+ HG+PPG K   ++ A  
Sbjct: 186  KHGFPSTTNRSNKGSSNR----PRRICTHCGKTGHTIEVCYQKHGFPPGSKPLSDKTASV 245

Query: 117  PPQNSSQSTPTANAQPKPSPSQQQQQQLTLQS----KEWILDSGASRHICNDRSLFQNWN 176
                +     T + Q   S   +    +   +      WILDSGA+ H+ +  S F +++
Sbjct: 246  NHTVTGDCKVTESTQSLESQDVRTSFPIVCSAISTPSSWILDSGATDHVSSSLSHFSSFS 305

Query: 177  QVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYNLIS-------------- 236
             +  I V L  G  +   + G V+ + S  L DVL++P F YNLIS              
Sbjct: 306  PINPIDVKLPTGQHVLATHSGTVKFTNSFYLVDVLYIPAFTYNLISISKLVSSLSCQLIF 365

Query: 237  --------DRLSLKMIGKVNNKHGLYLLNFIDSSNHHTTAG-----VSCAIS-IETWHHF 296
                    +  ++K IG V+   GLY  +F  S+ HH +         C+I  I+ WH  
Sbjct: 366  DHHSCIIQETNTMKKIGTVDVNEGLY--SFTASNIHHPSTNSVIVHPKCSIQPIDLWHFR 425

Query: 297  LDHLSPKCLS----LLKDT------------LSLPRPFKHSTYS---------------- 356
            + HLS + L     L  DT              LP P  HS  S                
Sbjct: 426  MGHLSHERLQSFPFLSVDTSFSCNTCHHAKQKKLPFPLSHSYASQPFDLLHMDIWGPCSV 485

Query: 357  ----GYKYFLTIVDNCSRFTWTYLMRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALE 416
                G+KYFLTIVD+ +RFTW +LM++KS+    +  FI  VET F K +KV R+DN LE
Sbjct: 486  TSMHGHKYFLTIVDDHTRFTWLFLMQNKSETRQHIINFINQVETQFDKHVKVIRTDNGLE 545

Query: 417  LHFTNLFAAKGTIHQFSCVERPQQNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTA 476
               T  F++KG IHQ +CVE PQQN +VERKHQHL NV R+L FQ+ +P  FW   ++ A
Sbjct: 546  FSMTQYFSSKGIIHQTTCVETPQQNGIVERKHQHLLNVTRSLLFQANLPSIFWCFALMHA 605

Query: 477  TFLINRTSIPLLSNKSPFEVLYDKDVNYPSLRVFGCVDISDELN---------------L 536
            TFLIN    P L N SPFE LY    +   L VFGC+  S  +                L
Sbjct: 606  TFLINCIPTPFLHNISPFEKLYGHPCDISILCVFGCLCYSSTITSHRTKLDPRAHPCIFL 665

Query: 537  GNTPHT--------------AEEQVVFNEG------------------IVQNPSTTITTD 596
            G  PHT                  V+F+E                   I  N     T  
Sbjct: 666  GFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSFTKPHSPSFSSPVPIHYNYVDYPTFP 725

Query: 597  STKIIEPNNIVEPNEAANPPHDITVGLRRSTRRHQPVGFLRDYHCNLLQGQVLNTTTLYS 656
            S+ I+E ++    ++ ++PP      LRRSTR  +P  +L+D+H     G   +T+T +S
Sbjct: 726  SSSIVESSDPPTSDQHSSPP-----PLRRSTRPRRPPTYLQDFH-----GAFTSTSTAHS 785

Query: 657  -------INNYLSYDKLSALHQNFIFNISSIVLPSYYNQAVN------------------ 716
                   ++++LSYD LS    +++F+ISS+  P  + +A                    
Sbjct: 786  STGIRHPLHSFLSYDLLSPSFHHYVFSISSVTEPKNFAEASKSDSWLKAMHEEIFALEAN 845

Query: 717  ----IVPLPNGHRVIGCKWVY-------------------RRYNQKEGIDFIDTFSPVAK 776
                +  LP     IGC+WVY                   + Y Q EG+DF DTFSPVAK
Sbjct: 846  NTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAK 905

Query: 777  IVTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFG----------------- 836
            + TV+LLLSL A   W L Q+D+NNAFL+G+L EEVYMQLP G                 
Sbjct: 906  LTTVRLLLSLAAINNWHLKQLDVNNAFLHGDLNEEVYMQLPPGLTPSFPGQVCRLQRSLY 965

Query: 837  --------YYQDLKS---SSSNTLSKSNYSLFTKGSGSSFIALLVYVDDILIIGPSPTEI 896
                    +Y  L S         S S++SLF K S ++  A+L+YVDDI++ G   TEI
Sbjct: 966  GLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPATTTAILIYVDDIVLAGNDLTEI 1025

Query: 897  TTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSGFLAVKPTSFP 956
              + +LL + F +KDLGN KYFLGLE++++  GI++ QRKY L +L D+G LA KP S P
Sbjct: 1026 HHLTSLLHTTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKYILDLLSDTGMLASKPVSTP 1085

Query: 957  FASNLKLTATAGIPLNLDDASSYRRLIGSLLYLQISRPNVSFAVHKLSPYVAKPYSEHLS 991
               ++ L+A++G PL   D ++YRRL+G L+YL  +RP++++AV +LS +V+ P + H  
Sbjct: 1086 MDYSMHLSASSGTPLT--DTAAYRRLVGRLIYLTNTRPDITYAVQQLSQFVSNPTTAHRQ 1145

[Close]
BLAST of Clc04G01155 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 5.2e-102
Identity = 319/1190 (26.81%), Postives = 483/1190 (40.59%), Query Frame = 0 

Query: 83   CTNCGIKGHVVDKCYKLHGYPPGYKSRINENAENPPQNSSQSTPTANAQPKPSPSQQQQQ 142
            C  CG++GH   +C +L  +        + N++ PP   +   P AN     SP      
Sbjct: 279  CQICGVQGHSAKRCSQLQHF------LSSVNSQQPPSPFTPWQPRANL-ALGSP------ 338

Query: 143  QLTLQSKEWILDSGASRHIC---NDRSLFQNWNQVFDIAVALHNGFQIKVDYIGNVRV-- 202
                 S  W+LDSGA+ HI    N+ SL Q +    D+ VA  +G  I + + G+  +  
Sbjct: 339  ---YSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVA--DGSTIPISHTGSTSLST 398

Query: 203  -SESLMLNDVLFLPKFAYNLIS-------DRLSLKM---------------IGKVNNKHG 262
             S  L L+++L++P    NLIS       + +S++                + +   K  
Sbjct: 399  KSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDE 458

Query: 263  LYLLNFIDSSNHHTTAGVSCAISIETWHHFLDHLSPKCLSLLKDTLSL------------ 322
            LY      S      A  S   +  +WH  L H +P  L+ +    SL            
Sbjct: 459  LYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSC 518

Query: 323  ---------PRPFKHST---------------------YSGYKYFLTIVDNCSRFTWTYL 382
                       PF  ST                     +  Y+Y++  VD+ +R+TW Y 
Sbjct: 519  SDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYP 578

Query: 383  MRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALE-LHFTNLFAAKGTIHQFSCVERPQ 442
            ++ KS        F  L+E  F   I  F SDN  E +     F+  G  H  S    P+
Sbjct: 579  LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPE 638

Query: 443  QNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTATFLINRTSIPLLSNKSPFEVLYD 502
             N + ERKH+H+      L   + +P  +W      A +LINR   PLL  +SPF+ L+ 
Sbjct: 639  HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 698

Query: 503  KDVNYPSLRVFGCV-----------DISDE------------------LNLGNTPHTAEE 562
               NY  LRVFGC             + D+                  L+L  +      
Sbjct: 699  TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 758

Query: 563  QVVFNE----------------------GIVQNPSTTITTDSTKIIEPNNIVEPNEAANP 622
             V F+E                        V +P TT+ T  T ++   +  +P+ AA P
Sbjct: 759  HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPT-RTPVLPAPSCSDPHHAATP 818

Query: 623  PHDITVGLRRS---------------------------------------TRRHQPVGFL 682
            P   +   R S                                       T+ H      
Sbjct: 819  PSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTS 878

Query: 683  RDYHCNLLQGQV------------------------------------------------ 742
            ++   N    Q+                                                
Sbjct: 879  QNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNN 938

Query: 743  ----LNTTTL--------------YSINNYLSYDK-----LSALHQNFIFN-ISSIVLPS 802
                LNT ++              YS+   L+ +      + AL      N + S +   
Sbjct: 939  NQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQ 998

Query: 803  YYNQAVNIVPLPNGH-RVIGCKWVYRR-------------------YNQKEGIDFIDTFS 862
              N   ++VP P  H  ++GC+W++ +                   YNQ+ G+D+ +TFS
Sbjct: 999  IGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFS 1058

Query: 863  PVAKIVTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYM------------------ 922
            PV K  +++++L +     W + Q+D+NNAFL G L ++VYM                  
Sbjct: 1059 PVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKL 1118

Query: 923  --------QLPFGYYQDLKS---SSSNTLSKSNYSLFTKGSGSSFIALLVYVDDILIIGP 982
                    Q P  +Y +L++   +     S S+ SLF    G S + +LVYVDDILI G 
Sbjct: 1119 RKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGN 1178

Query: 983  SPTEITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSGFLAVK 991
             PT +      L   F +KD     YFLG+E  +   G+++SQR+Y L +L  +  +  K
Sbjct: 1179 DPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAK 1238

[Close]
BLAST of Clc04G01155 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 6.2e-95
Identity = 315/1195 (26.36%), Postives = 474/1195 (39.67%), Query Frame = 0 

Query: 83   CTNCGIKGHVVDKCYKLHGYPPGYKSRINENAENPPQNSSQSTPTANAQPKPSPSQQQQQ 142
            C  C ++GH   +C +LH +         ++  N  Q++S  TP    QP+ + +     
Sbjct: 258  CQICSVQGHSAKRCPQLHQF---------QSTTNQQQSTSPFTPW---QPRANLAVNS-- 317

Query: 143  QLTLQSKEWILDSGASRHIC---NDRSLFQNWNQVFDIAVALHNGFQIKVDYIGNVRV-- 202
                 +  W+LDSGA+ HI    N+ S  Q +    D+ +A  +G  I + + G+  +  
Sbjct: 318  --PYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIA--DGSTIPITHTGSASLPT 377

Query: 203  -SESLMLNDVLFLPKFAYNLIS-------DRLSLKM---------------IGKVNNKHG 262
             S SL LN VL++P    NLIS       +R+S++                + +   K  
Sbjct: 378  SSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDE 437

Query: 263  LYLLNFIDSSNHHTTAGVSCAISIETWHHFLDHLSPKCLSLLKDTLSLP----------- 322
            LY      S      A      +  +WH  L H S   L+ +    SLP           
Sbjct: 438  LYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSC 497

Query: 323  ----------RPFKHST----------YS-----------GYKYFLTIVDNCSRFTWTYL 382
                       PF +ST          YS            Y+Y++  VD+ +R+TW Y 
Sbjct: 498  SDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYP 557

Query: 383  MRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALE-LHFTNLFAAKGTIHQFSCVERPQ 442
            ++ KS        F +LVE  F   I    SDN  E +   +  +  G  H  S    P+
Sbjct: 558  LKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPE 617

Query: 443  QNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTATFLINRTSIPLLSNKSPFEVLYD 502
             N + ERKH+H+  +   L   + VP  +W      A +LINR   PLL  +SPF+ L+ 
Sbjct: 618  HNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFG 677

Query: 503  KDVNYPSLRVFGC----------------------------------------------- 562
            +  NY  L+VFGC                                               
Sbjct: 678  QPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSR 737

Query: 563  -----------------VDISDELNLGNTPH----------------------------- 622
                             V  S E    + P+                             
Sbjct: 738  HVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPR 797

Query: 623  -----------------------------------------TAEEQVVFNEG----IVQN 682
                                                     TA+     N      I+ N
Sbjct: 798  PPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNN 857

Query: 683  P----------------------STTITTDSTKIIEPNNIVEPNEAANP-------PHDI 742
            P                      S  I T ST I EPN+    + +  P       P  I
Sbjct: 858  PNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPII 917

Query: 743  TVGLRRSTRRHQPVGFLRDYHCNLLQGQVLNTTTLYSINNYLSYDKLSALHQNFIFNISS 802
             V  +     H      +D        Q  +  T  + N+       +     +   + S
Sbjct: 918  QVNAQAPVNTHSMATRAKDGIRK--PNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGS 977

Query: 803  IVLPSYYNQAVNIV-PLPNGHRVIGCKWVYRR-------------------YNQKEGIDF 862
             +     N   ++V P P    ++GC+W++ +                   YNQ+ G+D+
Sbjct: 978  EINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDY 1037

Query: 863  IDTFSPVAKIVTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYM------------- 922
             +TFSPV K  +++++L +     W + Q+D+NNAFL G L +EVYM             
Sbjct: 1038 AETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPD 1097

Query: 923  -------------QLPFGYYQDLKS---SSSNTLSKSNYSLFTKGSGSSFIALLVYVDDI 982
                         Q P  +Y +L++   +     S S+ SLF    G S I +LVYVDDI
Sbjct: 1098 YVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDI 1157

Query: 983  LIIGPSPTEITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSG 991
            LI G     +      L   F +K+  +  YFLG+E  +   G+++SQR+Y L +L  + 
Sbjct: 1158 LITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTN 1217

[Close]
BLAST of Clc04G01155 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 5.2e-86
Identity = 293/1114 (26.30%), Postives = 484/1114 (43.45%), Query Frame = 0 

Query: 67   AKKKNQLRKKDSQRPICTNCGIKGHVVDKC---YKLHGYPPGYKSRINENAENPPQNSSQ 126
            A+ K++ R K   R  C NC   GH    C    K  G   G K+  ++N     QN+  
Sbjct: 217  ARGKSKNRSKSRVRN-CYNCNQPGHFKRDCPNPRKGKGETSGQKN--DDNTAAMVQNNDN 276

Query: 127  STPTANAQPKPSPSQQQQQQLTLQSKEWILDSGASRHICNDRSLFQNWNQVFDIAVALHN 186
                 N        +++   L+    EW++D+ AS H    R LF  +       V + N
Sbjct: 277  VVLFIN-------EEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGN 336

Query: 187  GFQIKVDYIGNV----RVSESLMLNDVLFLPKFAYNLISDRLSLKMIGKVN--------- 246
                K+  IG++     V  +L+L DV  +P    NLIS  ++L   G  +         
Sbjct: 337  TSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISG-IALDRDGYESYFANQKWRL 396

Query: 247  NKHGLYLLNFIDSSNHHTTAGVSC---------AISIETWHHFLDHLSPKCLSLL--KDT 306
             K  L +   +     + T    C          IS++ WH  + H+S K L +L  K  
Sbjct: 397  TKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSL 456

Query: 307  LSLPR----------------------------------------PFKHSTYSGYKYFLT 366
            +S  +                                        P +  +  G KYF+T
Sbjct: 457  ISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVT 516

Query: 367  IVDNCSRFTWTYLMRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALEL---HFTNLFA 426
             +D+ SR  W Y++++K     +  +F ALVE    + +K  RSDN  E     F    +
Sbjct: 517  FIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCS 576

Query: 427  AKGTIHQFSCVERPQQNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTATFLINRTS 486
            + G  H+ +    PQ N V ER ++ +    R++   +++P  FWG+ + TA +LINR+ 
Sbjct: 577  SHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSP 636

Query: 487  IPLLSNKSPFEVLYDKDVNYPSLRVFGC-----------VDISDE------LNLGNTPH- 546
               L+ + P  V  +K+V+Y  L+VFGC             + D+      +  G+    
Sbjct: 637  SVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFG 696

Query: 547  -----------TAEEQVVFNE---------------GIVQN----PSTT-------ITTD 606
                            VVF E               GI+ N    PST+        TTD
Sbjct: 697  YRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTD 756

Query: 607  --STKIIEPNNIVEPNEAANPPHDITVGLRRSTRRHQPVGFLRDYHCNLLQGQVLNTTTL 666
              S +  +P  ++E  E  +   +      +   +HQP   LR      ++ +   +T  
Sbjct: 757  EVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQP---LRRSERPRVESRRYPSTEY 816

Query: 667  Y---------SINNYLSYDKLSALHQNFIFNISSIVLPSYYNQAVNIVPLPNGHRVIGCK 726
                      S+   LS+ + + L +     + S+      N    +V LP G R + CK
Sbjct: 817  VLISDDREPESLKEVLSHPEKNQLMKAMQEEMESL----QKNGTYKLVELPKGKRPLKCK 876

Query: 727  WVY-------------------RRYNQKEGIDFIDTFSPVAKIVTVKLLLSLTASFGWDL 786
            WV+                   + + QK+GIDF + FSPV K+ +++ +LSL AS   ++
Sbjct: 877  WVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEV 936

Query: 787  VQMDINNAFLNGELFEEVYMQLPFGYYQDLKSSSSNTLSKSNYSL--------------- 846
             Q+D+  AFL+G+L EE+YM+ P G+    K      L+KS Y L               
Sbjct: 937  EQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFM 996

Query: 847  ---------------FTKGSGSSFIALLVYVDDILIIGPSPTEITTVKTLLRSHFLLKDL 906
                           F + S ++FI LL+YVDD+LI+G     I  +K  L   F +KDL
Sbjct: 997  KSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDL 1056

Query: 907  GNAKYFLGLEL--SQSTMGIYISQRKYRLQILEDSGFLAVKPTSFPFASNLKLTATAGIP 966
            G A+  LG+++   +++  +++SQ KY  ++LE       KP S P A +LKL+     P
Sbjct: 1057 GPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKM-CP 1116

Query: 967  LNLDDASS-----YRRLIGSLLYLQI-SRPNVSFAVHKLSPYVAKPYSEHLSAAHHLLRY 988
              +++  +     Y   +GSL+Y  + +RP+++ AV  +S ++  P  EH  A   +LRY
Sbjct: 1117 TTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRY 1176

[Close]
BLAST of Clc04G01155 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-68
Identity = 298/1192 (25.00%), Postives = 458/1192 (38.42%), Query Frame = 0 

Query: 68   KKKNQLRKKDSQRPICTNCGIKGHVVDKCYKLHGYPPGYKSRI-NENAENPPQNSSQSTP 127
            K K   +     +  C +CG +GH+   C+        YK  + N+N EN  Q       
Sbjct: 217  KPKKIFKGNSKYKVKCHHCGREGHIKKDCFH-------YKRILNNKNKENEKQ-----VQ 276

Query: 128  TANAQPKPSPSQQQQQQLTLQSKEWILDSGASRHICNDRSLFQNWNQV---FDIAVALHN 187
            TA +       ++      + +  ++LDSGAS H+ ND SL+ +  +V     IAVA   
Sbjct: 277  TATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQG 336

Query: 188  GFQIKVDY-IGNVRVSESLMLNDVLFLPKFAYNLISDR--------LSLKMIGKVNNKHG 247
             F       I  +R    + L DVLF  + A NL+S +        +     G   +K+G
Sbjct: 337  EFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNG 396

Query: 248  LY------LLNFIDSSNHHT-TAGVSCAISIETWHHFLDHLS------------------ 307
            L       +LN +   N    +       +   WH    H+S                  
Sbjct: 397  LMVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSL 456

Query: 308  -----------PKCLS---------LLKDTLSLPRPF--KHS---------TYSGYKYFL 367
                         CL+          LKD   + RP    HS         T     YF+
Sbjct: 457  LNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFV 516

Query: 368  TIVDNCSRFTWTYLMRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALEL---HFTNLF 427
              VD  + +  TYL++ KSD   +   F+A  E HF+  +     DN  E          
Sbjct: 517  IFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFC 576

Query: 428  AAKGTIHQFSCVERPQQNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTATFLINRT 487
              KG  +  +    PQ N V ER  + +   AR +   +++   FWG+ +LTAT+LINR 
Sbjct: 577  VKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRI 636

Query: 488  SIPLL--SNKSPFEVLYDKDVNYPSLRVFGCV---------------------------- 547
                L  S+K+P+E+ ++K      LRVFG                              
Sbjct: 637  PSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNG 696

Query: 548  ----------------DISDELNLGNTPHTAEEQVVFNEGIVQNPSTTITTDSTKIIE-- 607
                             + DE N+ N+    + + VF +   ++ +     DS KII+  
Sbjct: 697  FKLWDAVNEKFIVARDVVVDETNMVNS-RAVKFETVFLKDSKESENKNFPNDSRKIIQTE 756

Query: 608  -PNNIVE-----------PNEAANPPHD----ITVGLRRSTRRHQPVGFL---------- 667
             PN   E            +E  N P+D    I       ++    + FL          
Sbjct: 757  FPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYF 816

Query: 668  --------RDYHCNLLQG-------------------------------------QVLNT 727
                    RD H N  +G                                     + L T
Sbjct: 817  LNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKT 876

Query: 728  TTLYSINNYLSYDKLSALHQNFIFN---------------------ISSIVLPSYYNQAV 787
                S N   +      L+ + IFN                     I++ +     N   
Sbjct: 877  KPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTW 936

Query: 788  NIVPLPNGHRVIGCKWVY-------------------RRYNQKEGIDFIDTFSPVAKIVT 847
             I   P    ++  +WV+                   R + QK  ID+ +TF+PVA+I +
Sbjct: 937  TITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISS 996

Query: 848  VKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFGYYQDLKSSSSNT--LSKSNY 907
             + +LSL   +   + QMD+  AFLNG L EE+YM+LP    Q +  +S N   L+K+ Y
Sbjct: 997  FRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP----QGISCNSDNVCKLNKAIY 1056

Query: 908  SL-------------------------------FTKGSGSSFIALLVYVDDILIIGPSPT 967
             L                                 KG+ +  I +L+YVDD++I     T
Sbjct: 1057 GLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMT 1116

Query: 968  EITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSGFLAVKPTS 990
             +   K  L   F + DL   K+F+G+ +      IY+SQ  Y  +IL           S
Sbjct: 1117 RMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVS 1176

[Close]
BLAST of Clc04G01155 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.5e-44
Identity = 96/229 (41.92%), Postives = 140/229 (61.14%), Query Frame = 0 

Query: 688 LLVYVDDILIIGPSPTEITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYR 747
           LL+YVDDIL+ G S T +  +   L S F +KDLG   YFLG+++     G+++SQ KY 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 748 LQILEDSGFLAVKPTSFPFASNLKLT-ATAGIPLNLDDASSYRRLIGSLLYLQISRPNVS 807
            QIL ++G L  KP S P    L  + +TA  P    D S +R ++G+L YL ++RP++S
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP----DPSDFRSIVGALQYLTLTRPDIS 122

Query: 808 FAVHKLSPYVAKPYSEHLSAAHHLLRYLKGTAGQRIFLAATNNFQLKAYVDSDWDSCLDT 867
           +AV+ +   + +P          +LRY+KGT    +++   +   ++A+ DSDW  C  T
Sbjct: 123 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTST 182

Query: 868 RRFVTDFCKFLGDSLISWKSKKQATVSRSSAEAEYRAFAMVSSELTWVS 916
           RR  T FC FLG ++ISW +K+Q TVSRSS E EYRA A+ ++ELTW S
Sbjct: 183 RRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227

[Close]
BLAST of Clc04G01155 vs. ExPASy TrEMBL
Match: A0A2N9EL12 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7429 PE=4 SV=1)

HSP 1 Score: 706.4 bits (1822), Expect = 1.6e-199
Identity = 459/1236 (37.14%), Postives = 609/1236 (49.27%), Query Frame = 0 

Query: 79   QRPICTNCGIKGHVVDKCYKLHGYPPGYKSRINENAENPPQNSSQSTPTANAQPKPSPSQ 138
            +RP CT+CG+ GH VDKCYKLHG+PPGYK+R   +A N    S  + PTA    + S SQ
Sbjct: 281  ERPQCTHCGLLGHTVDKCYKLHGFPPGYKTRGKHSAANQTSLSHLAQPTAAVTDEFSTSQ 340

Query: 139  QQQQQL----------------------------------------------------TL 198
              Q Q                                                      +
Sbjct: 341  LSQVQAYSHHQASVNTTSSHLPSSSMTGIPFCPSTCSSSNFTPNLSHSVFSSHTTPHSHI 400

Query: 199  QSKEWILDSGASRHICNDRSLFQNWNQVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDV 258
            +   WILD+GA+ H+    S            V L NG  + V +IG V++S SL+L DV
Sbjct: 401  KHDSWILDTGATDHMVCSISCLSTVTSTIQAIVELPNGNMVPVTHIGTVKLSSSLILTDV 460

Query: 259  LFLPKFAYNLISDRLSLKMIGKVNNKHGLYLL-----------------------NFIDS 318
            L +P F +NLIS     +MIG     +GLY+L                       +F   
Sbjct: 461  LCVPSFHFNLISAFTPWRMIGLGKIHNGLYILQLDALNSQLNKLQSVVFAYPSTDSFPFH 520

Query: 319  SNHHTTAGVSCAISIETWH-----------HFLDHLSPKCLSLLKDT------------- 378
            S H T A VS    ++ WH           HFL    P   ++ K++             
Sbjct: 521  SAHKTVAPVSNLTDLQLWHCRLGHPSVDRMHFLHQFVPTFHAINKESHFCDVCPLAKQKR 580

Query: 379  LSLPR------------------PFKHSTYSGYKYFLTIVDNCSRFTWTYLMRSKSDALY 438
            L  P                   P+  ST+ G+KYFLTIVD+CSR TW YLM SK+D   
Sbjct: 581  LPFPTAGHKSIHNFDLIHCDIWGPYFLSTHDGFKYFLTIVDDCSRSTWIYLMSSKADTRP 640

Query: 439  IVPRFIALVETHFSKTIKVFRSDNALELHFTNLFAAKGTIHQFSCVERPQQNSVVERKHQ 498
            ++  F  ++ET F+  IK  RSDN LE   ++ F++KG IHQ SCV+ PQQNSVVERKHQ
Sbjct: 641  LLLSFFTMIETQFNTKIKALRSDNGLEFLMSDFFSSKGVIHQTSCVKTPQQNSVVERKHQ 700

Query: 499  HLFNVARALFFQSRVPIRFWGDCILTATFLINRTSIPLLSNKSPFEVLYDKDVNYPSLRV 558
            HL NVARAL FQS VP+ FWGD IL A +LINR   PLL NK+PFE+L     +Y  L+V
Sbjct: 701  HLLNVARALKFQSNVPLNFWGDLILHAAYLINRLPSPLLQNKTPFEILMHTAPSYSHLKV 760

Query: 559  FGCVDISDEL-----------------------------NLGNTPHTAEEQVVFNEGI-- 618
            FGC+  +  L                             +L          V+F+E    
Sbjct: 761  FGCLAYASNLSPHKTKFDTRAIPCVFLGYPFGVKGYKLFDLSTKKFLVSRDVIFHESTFP 820

Query: 619  ------VQNPSTTITTDSTK-------IIEPNNIVE------------------------ 678
                  + NP T+ +T S         ++ P N  E                        
Sbjct: 821  FYSTTSLINPFTSPSTSSDSASYLTHPLLHPTNSTESSIFSPLPTQAHFCPKSPLPHCLE 880

Query: 679  --------------------------------------------------PNEAANPPHD 738
                                                              P + + P + 
Sbjct: 881  SPLHHNLQSPLHHSPESPPQHSPESPLLHGPKSSLVSAPSVEPALNASAYPTDTSQPINT 940

Query: 739  I------------TVGLRRSTRRHQPVGFLRDYHCNLL----QGQVLNTTTLYSINNYLS 798
            +            +  LR+S+R  +   +L+DYHCNL          +    + I + LS
Sbjct: 941  LSESVMDTSSSIPSASLRKSSRPVKTPSYLQDYHCNLAISADTSFPFSVAVTHPIQHNLS 1000

Query: 799  YDKLSALHQNFIFNISSIVLPSYYNQAVN----------------------IVPLPNGHR 858
            Y  LS  H+ F   +S+   P +Y++A++                      +  L  G  
Sbjct: 1001 YSHLSDSHKAFTLALSTHTEPHFYHKAIHSPQWCEAMSKELTALEANHTWVLTSLSPGKH 1060

Query: 859  VIGCKWVY-------------------RRYNQKEGIDFIDTFSPVAKIVTVKLLLSLTAS 918
             IGCKWVY                   + YNQ+EGID+ +TFSPVAK+VTV+  +++ A+
Sbjct: 1061 PIGCKWVYKLKFKSDGSIERYKARLVAKGYNQQEGIDYFETFSPVAKLVTVRSFVAIAAA 1120

Query: 919  FGWDLVQMDINNAFLNGELFEEVYMQLPFGY----------------YQDLKSSS----- 978
             GW L Q+D+NNAFL+G+L EEVYM LP GY                   LK +S     
Sbjct: 1121 KGWSLTQLDVNNAFLHGDLDEEVYMSLPLGYKGNNQLPHQVCRLTKSLYGLKQASRQWFS 1180

Query: 979  --SNTL-------SKSNYSLFTKGSGSSFIALLVYVDDILIIGPSPTEITTVKTLLRSHF 993
              S+TL       SK +YSLFTK  GS+FIALLVYVDDILI   +PT +T + T L   F
Sbjct: 1181 KFSSTLLHHGFIQSKCDYSLFTKTKGSTFIALLVYVDDILIASNAPTAVTKLTTFLDDKF 1240

[Close]
BLAST of Clc04G01155 vs. ExPASy TrEMBL
Match: A0A2N9IF64 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50575 PE=4 SV=1)

HSP 1 Score: 705.3 bits (1819), Expect = 3.6e-199
Identity = 450/1167 (38.56%), Postives = 602/1167 (51.59%), Query Frame = 0 

Query: 75   KKDSQRPICT--NCGIKGHVVDKCYKLHGYPPGYKSR--------------INENA---- 134
            +++ +RP CT  +CG+ GH VDKCYKLHG+PPGYK+R                 NA    
Sbjct: 11   RQERKRPTCTHCHCGLLGHTVDKCYKLHGFPPGYKTRGKAPAVANQTSLSAFGSNAHASA 70

Query: 135  -ENPPQNSSQ-------------------STP---------TANA--------------- 194
             E  P   SQ                   S P         T NA               
Sbjct: 71   EEISPLQLSQVQAQCEQLLALINNKTLTNSVPNVSNGHHQATVNAASSSTFPISSMTGIP 130

Query: 195  -------QPKPSP-------SQQQQQQLTLQSKEWILDSGASRHICNDRSLFQNWNQVFD 254
                    P  +P       S       +++   WILD+GA+ H+ +  S F     +  
Sbjct: 131  FCASICSNPVFTPNLSHSVFSSHTTPHSSIKQNSWILDTGATDHMVHSLSCFTTVTSIIQ 190

Query: 255  IAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYNLISDRLSLKMIGKVNNKHGLY 314
              V L NG  + V +IG V++S SL+L DVL +P F +NLIS     +MIG    K   +
Sbjct: 191  ATVELPNGNLVPVTHIGTVKLSSSLILTDVLCVPSFHFNLISAFTPWRMIGL--GKTSQW 250

Query: 315  LLNFIDSSNHHTTAGVSCAISIETWHHFLDHLSPKCLSLLKDTLSLPRPFKHSTYSGYKY 374
             L+F  +   H T+     I  + W                       P+   T+ G+KY
Sbjct: 251  ALHFGLTKTGHKTSHTFDLIHCDIW----------------------GPYFLPTHDGFKY 310

Query: 375  FLTIVDNCSRFTWTYLMRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALELHFTNLFA 434
            FLTIVD+CSR TW YLM SK     ++  F  +VET F+  IK  RSDN LE   ++ F+
Sbjct: 311  FLTIVDDCSRSTWVYLMSSKGATRSLLVSFFTMVETQFNTKIKTIRSDNGLEFIMSDFFS 370

Query: 435  AKGTIHQFSCVERPQQNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTATFLINRTS 494
            +KG IHQ SCV+ PQQNSVVERKHQHL NVARA+ FQS +P+ FWG+CIL A +LINR  
Sbjct: 371  SKGVIHQTSCVKTPQQNSVVERKHQHLLNVARAIRFQSNLPLSFWGECILHAAYLINRLP 430

Query: 495  IPLLSNKSPFEVLYDKDVNYPSLRVFGCVDISDELNLGNTPHTAE--------------- 554
             P+L  K+P+EVL  K   Y  L+VFGC+  +  L+   T   A+               
Sbjct: 431  TPILHQKTPYEVLMHKVPTYTHLKVFGCLAYASNLSSHKTKFDAKAFPCVFLGYPFGTKG 490

Query: 555  --------------EQVVFNEGI--------VQNPSTTITTDSTKIIEPNNIVEP----- 614
                            VVF+E I        + NP +++ + S     P + V P     
Sbjct: 491  YKLLDLSTNQCFVSRDVVFHESIFPFHNSTSLINPHSSLDSVSASSCHPFSSVSPPNIPS 550

Query: 615  ----------------------------NEAANPPHDITV-------------------- 674
                                         E  NPP  + V                    
Sbjct: 551  CSTLPCDSTSTPREPHSLPSQEPHSLPSQEPHNPPSALPVTPTSDSSVSSSDSSVSSSDS 610

Query: 675  ------GLRRSTRRHQPVGFLRDYHCNLL----QGQVLNTTTLYSINNYLSYDKLSALHQ 734
                   +R+S+R  +P  +L+DYHC+L        + +  T+Y I + LSY KLSA H+
Sbjct: 611  PVTPHLPIRQSSRIVKPPSYLQDYHCSLASSLPSSDLASANTIYPIQHTLSYSKLSAPHK 670

Query: 735  NFIFNISSIVLPSYYNQAVN----------------------IVPLPNGHRVIGCKWVY- 794
             F   IS+ + P +Y++AV                       +  LP G + IGCKWVY 
Sbjct: 671  AFTLAISTPIEPQFYHEAVKSPHWVDAMSKELEALEANHTWVLTSLPPGKQPIGCKWVYK 730

Query: 795  ------------------RRYNQKEGIDFIDTFSPVAKIVTVKLLLSLTASFGWDLVQMD 854
                              + YNQ+EGID+ +TFSPVAK+VTV+  ++L A+ GW + Q+D
Sbjct: 731  LKFKSDGTIERYKARLVAKGYNQREGIDYSETFSPVAKLVTVRSFIALAAAQGWPITQLD 790

Query: 855  INNAFLNGELFEEVYMQLPFGY----------------YQDLKSSS-------SNTL--- 914
            +NNAFL+G+L EEV+M LP G+                   LK +S       S+TL   
Sbjct: 791  VNNAFLHGDLDEEVFMSLPPGFGNKGGHPNQVCRLTKSLYGLKQASRQWFSKFSSTLLAH 850

Query: 915  ----SKSNYSLFTKGSGSSFIALLVYVDDILIIGPSPTEITTVKTLLRSHFLLKDLGNAK 974
                SK +YSLFTK  G +F+ALLVYVDDILI       +T +   L  HF LKDLG AK
Sbjct: 851  GFIQSKCDYSLFTKTVGDAFLALLVYVDDILIASNDAVSVTNLTAFLDHHFKLKDLGPAK 910

Query: 975  YFLGLELSQSTMGIYISQRKYRLQILEDSGFLAVKPTSFPFASNLKLTATAGIPLNLDDA 993
            YFLGLEL+++  GI + QRKY L IL+D+GFL  KP  FP   +LKL+   G    L D 
Sbjct: 911  YFLGLELARTAKGISLCQRKYTLDILQDTGFLGSKPVKFPMEQHLKLSKDEGPA--LPDP 970

[Close]
BLAST of Clc04G01155 vs. ExPASy TrEMBL
Match: A0A2N9H2Y3 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34107 PE=4 SV=1)

HSP 1 Score: 703.4 bits (1814), Expect = 1.4e-198
Identity = 458/1245 (36.79%), Postives = 628/1245 (50.44%), Query Frame = 0 

Query: 58   DGFVDETENAKKKNQLRKKDSQRPICTNCGIKGHVVDKCYKLHGYPPGYKSR-------- 117
            + F   T+N K+  Q  +KD    IC++CG KGH  DKCYKLHGYPPG++S+        
Sbjct: 1100 NAFFTRTDNQKQHYQYPRKDKPPCICSHCGYKGHTADKCYKLHGYPPGFRSKGRNVAVAN 1159

Query: 118  -----------INENAENPPQNSSQSTP--------TANAQPKPSPSQQQQQQL------ 177
                         +NA++ P  ++ S          TA AQ     S  Q  Q       
Sbjct: 1160 QVSSSAVPHSESADNAQSIPNLTAMSVQCQQLLNMLTAQAQQANPVSDSQNHQAATSISV 1219

Query: 178  -----------------------------------TLQSKEWILDSGASRHICNDRSLFQ 237
                                               T  S +W++D+GA  H+      + 
Sbjct: 1220 TQSHSNMAGKPTCLSTFSNPNMDHSVFSDKFTVKPTFSSTQWVIDTGAKDHMVITTQFYT 1279

Query: 238  NWNQVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYNLIS----------- 297
              + V +I+V L NG  + V +IG+V+++ +L+L +VL +P F +NLIS           
Sbjct: 1280 TKHIVDNISVNLPNGQSVMVTHIGSVQLTPTLLLTNVLCVPSFDFNLISVSKLTSSLHCC 1339

Query: 298  -----------DRLSLKMIGKVNNKHGLYLLNFIDSSNHHTTAGVSCAIS---------- 357
                       D +  +MIG     +GLYLL+   SS+  TTA    + S          
Sbjct: 1340 IFFLSTYCFIQDLMHWRMIGMGRQHNGLYLLD--SSSDSTTTAATITSDSSLPKHLYSLS 1399

Query: 358  --------IETWH-----------HFL--------------------------------- 417
                    I  WH           HFL                                 
Sbjct: 1400 SIKNPNKDIHVWHCRLGHPSLSRMHFLSSIVPNASYSSNDASTCTVCPLAKQRKLPFPNN 1459

Query: 418  DHLSPKCLSLLKDTLSLPRPFKHSTYSGYKYFLTIVDNCSRFTWTYLMRSKSDALYIVPR 477
            +HLS K   LL   + +  P+   T  GY+YFLT+VD+C+R TW YLMRSKSD   ++  
Sbjct: 1460 NHLSLKSFDLLH--IDIWGPYHIPTVEGYRYFLTLVDDCTRTTWIYLMRSKSDTSTLLTS 1519

Query: 478  FIALVETHFSKTIKVFRSDNALELHFTNLFAAKGTIHQFSCVERPQQNSVVERKHQHLFN 537
            FI ++ T F   IK  RSDN  E H  + +A+KG IHQ SCVE PQQNSVVERKHQH+ N
Sbjct: 1520 FITMIHTQFHTVIKQLRSDNGQEFHMPDFYASKGIIHQHSCVETPQQNSVVERKHQHILN 1579

Query: 538  VARALFFQSRVPIRFWGDCILTATFLINRTSIPLLSNKSPFEVLYDKDVNYPSLRVFGCV 597
            VARAL FQS +P+++WG CI TA +LINR   P+LSNKSPFE L  K  +Y  L+VFGC+
Sbjct: 1580 VARALCFQSHLPLKYWGHCIQTAVYLINRLPCPILSNKSPFEALLHKTPSYTHLKVFGCL 1639

Query: 598  DISDELN-----------------------------LGNTPHTAEEQVVFNEGIV----Q 657
              +  L+                             L          VVF+E I     Q
Sbjct: 1640 CFASTLSGHRTKFDPRAKACAFLGYPSGVKGYKLLELNTHKVLISRDVVFHETIFPFQNQ 1699

Query: 658  NPSTTITT----------------------------------------------DSTKII 717
             P    +T                                              D++ ++
Sbjct: 1700 TPLPDFSTFLSCSPEPLSPTPHFIPPSHLIADMPSATSAPAPPAPPVSASLSPLDTSSLL 1759

Query: 718  EPNNIVEPN----EAANPPHDITVGLRRSTRRHQPVGFLRDYHCNLL-------QGQVLN 777
            + N+   P+    E  +P   ++  LRRSTR H+P  +L+DYHC L           + +
Sbjct: 1760 DHNSSSSPSLDHIETDSPGQSVSSPLRRSTRVHKPPTYLQDYHCQLAHCVGSTSSPPLAS 1819

Query: 778  TTTLYSINNYLSYDKLSALHQNFIFNISSIVLPSYYNQA--------------------- 837
            +   Y ++  LSYD LS  H+NF  ++++I+ PS+++QA                     
Sbjct: 1820 SGKPYPLSTSLSYDHLSPTHRNFALSVTAILEPSFFHQANQSPHWQEAMFAELAALEANN 1879

Query: 838  -VNIVPLPNGHRVIGCKWVY-------------------RRYNQKEGIDFIDTFSPVAKI 897
               + PLP G   IGCKWVY                   + Y Q+EG+D+ +TFSPVAK 
Sbjct: 1880 TWTLTPLPLGKHPIGCKWVYKVKLKSDGSLERYKARLVAKGYTQQEGLDYSETFSPVAKF 1939

Query: 898  VTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFGY----------------Y 957
             TV+ LL++ +   W L Q+D+NNAFL+G+L EEVYM LP G+                 
Sbjct: 1940 STVRTLLAVASVKHWSLTQLDVNNAFLHGDLAEEVYMALPPGFPSKGETPNLVCKLNKSL 1999

Query: 958  QDLKSSS-------SNTL-------SKSNYSLFTKGSGSSFIALLVYVDDILIIGPSPTE 990
              LK +S       S+T+       SKS+YSLFT+  G++FIALLVYVDDILI   +  +
Sbjct: 2000 YGLKQASRQWFAKFSSTIIKQGFVQSKSDYSLFTRTQGTAFIALLVYVDDILI---ASND 2059

[Close]
BLAST of Clc04G01155 vs. ExPASy TrEMBL
Match: A0A438EW68 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2014 PE=4 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 1.4e-195
Identity = 424/1071 (39.59%), Postives = 577/1071 (53.87%), Query Frame = 0 

Query: 75   KKDSQRPICTNCGIKGHVVDKCYKLHGYPPGYK--------SRINENAE----------- 134
            K    R  C++CG +GH  DKCYKL GYPPG+K        S +  N+E           
Sbjct: 198  KTRRDRITCSHCGFQGHTKDKCYKLVGYPPGWKFKNKGPNSSSMANNSEVLESLNAGSSE 257

Query: 135  ------------------NPPQNSSQSTPTANAQPKPSPSQQQQQQLTLQSKEWILDSGA 194
                                  +S+ S  T N+   PS S     ++ +Q+K WI+DSGA
Sbjct: 258  STVSSLTTMQCQQLIQLLTNQLSSTSSASTENSSTGPSVSNFAGNKVKIQNKGWIIDSGA 317

Query: 195  SRHICNDRSLFQNWNQVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYNLI 254
            + H+CND SLF +   V ++ V L  G  + +D +G+V +S+ + L +VLF+P F YNL+
Sbjct: 318  THHVCNDISLFDSSIDVQNVRVTLPTGITVPIDRVGSVILSKDVKLLNVLFVPTFRYNLL 377

Query: 255  SDRLSLKMIGKVNNKHGLYLL---NFIDSSNHHTTAGVSCAISIETWHHFLDH------- 314
            S+    KMIGK + K  LY L   +F+        + +  +  +  WH  L H       
Sbjct: 378  SEPSRGKMIGKGSRKGQLYQLDFDSFVADKAFVAASRIPTSNILSLWHSRLGHPSFSRLK 437

Query: 315  -------------LSP---------KCLSLLK---------DTLSLP--RPFKHSTYSGY 374
                         L+P         +CL  +          D L L    PF   +  GY
Sbjct: 438  GLQSILDFDSSFDLTPCNVCPLAKQRCLPYISLNKRCSSTFDLLHLDIWGPFSVGSVEGY 497

Query: 375  KYFLTIVDNCSRFTWTYLMRSKSDALYIVPRFIALVETHFSKTIKVFRSDNALELHFTNL 434
            K+FLTIVD+ SR TW Y++++KS+    +P F A V+  F K +K  RSDNA EL  +N 
Sbjct: 498  KFFLTIVDDYSRVTWVYMLKNKSEVQKYIPDFFAFVKKQFGKEVKAIRSDNAPELFLSNF 557

Query: 435  FAAKGTIHQFSCVERPQQNSVVERKHQHLFNVARALFFQSRVPIRFWGDCILTATFLINR 494
            + + G IH  SCVE PQQNSVVERKHQH+ NVARAL FQS +P+ +W DCILTA +LINR
Sbjct: 558  YHSLGVIHYRSCVETPQQNSVVERKHQHILNVARALLFQSSLPVCYWSDCILTAVYLINR 617

Query: 495  TSIPLLSNKSPFEVLYDKDVNYPSLRVFGCVDISDELNLGNTPHTAEEQVVFNEGIVQNP 554
            T  P L+NK+PFE+L+DK  +Y  LRVFGC+     L    T  +   +       +  P
Sbjct: 618  TPSPFLNNKTPFEILHDKLPDYSHLRVFGCLCYVSTLKANRTKFSPRAKAAV---FLVLP 677

Query: 555  STTITTDSTKIIEPNNIVEPNEAANPPHDITVGLRRSTRRHQPVGFLRDYHCNLLQ--GQ 614
                  D +  + P  I +P     P         R TR  +   +L+DYHC+L+     
Sbjct: 678  CIAADNDQSSSVLPRVISQPPLQVAPS-------SRPTRVSKQPSYLKDYHCSLINSVAH 737

Query: 615  VLNTTTLYSINNYLSYDKLSALHQNFIFNISSIVLPSYY--------------------- 674
            V   +T + I ++LSYDKLS  ++ F  ++S I  PS +                     
Sbjct: 738  VETHSTSHPIQHFLSYDKLSPSYKLFSLSVSIISEPSSFAKAAEIPEWRAAMDCELEALE 797

Query: 675  -NQAVNIVPLPNGHRVIGCKWVY-------------------RRYNQKEGIDFIDTFSPV 734
             N+  +IV LP G   +GCKWV+                   + Y Q+EGID++DTFSPV
Sbjct: 798  ENKTWSIVSLPVGKHPVGCKWVHKVKHKADGTIERYKARLVAKGYTQREGIDYVDTFSPV 857

Query: 735  AKIVTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFGYYQDLKSSSSNTL-- 794
            AK+VTVKLLL++ A  GW L Q+D+NNAFL+G+L EEVYM+LP GY +  +S  SN +  
Sbjct: 858  AKLVTVKLLLAIAAVKGWHLSQLDVNNAFLHGDLNEEVYMKLPPGYNRKGESLPSNAVCL 917

Query: 795  ------------------------------SKSNYSLFTKGSGSSFIALLVYVDDILIIG 854
                                          S S++SLF K     FIALLVYVDD     
Sbjct: 918  LHKSLYGLKQASRQWFSKFSTAIMGLGFSQSPSDHSLFIKNVDGLFIALLVYVDD----- 977

Query: 855  PSPTEITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSGFLAV 914
                                DLG+ KYFLGLE+++S+ GI +SQRKY L +L D G+L  
Sbjct: 978  --------------------DLGDVKYFLGLEIAKSSTGICVSQRKYVLDLLSDFGYLGC 1037

Query: 915  KPTSFPFASNLKLTATAGIPLNLDDASSYRRLIGSLLYLQISRPNVSFAVHKLSPYVAKP 974
            K  S P  +N+KL+   G+  +L D S YRRL+G LLYL ++RP++S+AV +LS ++++P
Sbjct: 1038 KAASTPMEANVKLSMDEGV--DLPDVSLYRRLLGKLLYLTLTRPDISYAVGRLSQFISRP 1097

Query: 975  YSEHLSAAHHLLRYLKGTAGQRIFLAATNNFQLKAYVDSDWDSCLDTRRFVTDFCKFLGD 991
               HL AA  +LRYLKG  G  +F    +  +L AY DSDW  C D+RR VT FC FLG+
Sbjct: 1098 KLPHLHAAQRILRYLKGNPGMGLFFPNNSELRLMAYTDSDWARCPDSRRSVTGFCVFLGN 1157

[Close]
BLAST of Clc04G01155 vs. ExPASy TrEMBL
Match: A0A2N9EHN7 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2137 PE=4 SV=1)

HSP 1 Score: 688.3 bits (1775), Expect = 4.6e-194
Identity = 456/1255 (36.33%), Postives = 622/1255 (49.56%), Query Frame = 0 

Query: 58   DGFVDETENAKKKNQLRKKDSQRPICTNCGIKGHVVDKCYKLHGYPPGYKSRINENAENP 117
            + F   T+N+K+  Q  +KD    IC++CG KGH  DKCYKLHGYPPG++S+   N    
Sbjct: 287  NAFFTRTDNSKQYYQYPRKDKPPCICSHCGYKGHTADKCYKLHGYPPGFRSK-GRNIAVA 346

Query: 118  PQNSSQSTPTA----NAQPKPS------PSQQQQQQLTLQSK------------------ 177
             Q SS + P +    N Q  P+        QQ    LT Q++                  
Sbjct: 347  SQVSSSAVPHSESANNVQSIPNLAAMSVQCQQLLNMLTTQAQQTNSVSDSHNHQAAASIS 406

Query: 178  --------------------------------------------EWILDSGASRHICNDR 237
                                                        +W++D+GA+ H+    
Sbjct: 407  SISVTQPHSNMAGKPTCLSTFSKPNMDHSVFSAKFTVKPHFSPAQWVIDTGATDHMVITT 466

Query: 238  SLFQNWNQVFDIAVALHNGFQIKVDYIGNVRVSESLMLNDVLFLPKFAYNLIS------- 297
              +   + V +I+V L NG  + V +IG+V+++ +L+L DVL +P F +NLIS       
Sbjct: 467  QFYTTMHCVDNISVNLPNGQSVLVTHIGSVQITPTLLLTDVLCVPSFDFNLISVSKLTSS 526

Query: 298  ---------------DRLSLKMIGKVNNKHGLYLLNFIDSSNHHTTAGVSCAI------- 357
                           D +  +MIG     +GLYLL+F   S +   A +S          
Sbjct: 527  LHCCIFFLSTYCFIQDLMHWRMIGMGKQHNGLYLLDFSSDSTNTAAAALSSDSDLHKHLY 586

Query: 358  ----------SIETWH-----------HFLDHLSPKCLSLLKDTLS------------LP 417
                       I  WH           HFL  + P  +SL  +  S            LP
Sbjct: 587  SLSSIKNSNKDIHVWHCRFGHPSLSRMHFLSSIVPN-MSLSSEDASTCTVCPLAKQKRLP 646

Query: 418  RPFKH--------------------STYSGYKYFLTIVDNCSRFTWTYLMRSKSDALYIV 477
             P K+                     T  GY+YFLT+VD+C+R TW YLMRSKSD   ++
Sbjct: 647  FPNKNHLSLNSFDLLHIDIWGPYHVPTVEGYRYFLTLVDDCTRTTWIYLMRSKSDTRPLL 706

Query: 478  PRFIALVETHFSKTIKVFRSDNALELHFTNLFAAKGTIHQFSCVERPQQNSVVERKHQHL 537
              FI +++T F   IK  RSDN  E H    +A+KG IHQ SCVE PQQNSVVERKHQH+
Sbjct: 707  TSFITMIQTQFHTMIKQIRSDNGQEFHMPEFYASKGIIHQHSCVETPQQNSVVERKHQHI 766

Query: 538  FNVARALFFQSRVPIRFWGDCILTATFLINRTSIPLLSNKSPFEVLYDKDVNYPSLRVFG 597
             NVAR+L FQS +P+++WG CI TA +LINR   P+LSNKSPFE L  K  +Y  L+VFG
Sbjct: 767  LNVARSLCFQSYLPLQYWGHCIQTAVYLINRLPCPILSNKSPFEALLHKTPSYTHLKVFG 826

Query: 598  CVDISDELNLGNTPHTAEEQ-----------------------------VVFNEGI---- 657
            C+  +  L+   T      Q                             VVF+E I    
Sbjct: 827  CLCFASTLSSHRTKFDPRAQSCVFLGYPSGVKGYKLLDLTTHKVFISRDVVFHETIFPFQ 886

Query: 658  VQNPSTTITT----------------DSTKIIE-----------------------PNNI 717
             Q P    TT                 S  II                        P + 
Sbjct: 887  TQTPPPDFTTFLNSTPEPISTTPHFIPSCSIIADDILPCSPIPPSAPVPSISTSPLPFSD 946

Query: 718  VEPN--------------EAANPPHDITVGLRRSTRRHQPVGFLRDYHCNLL-------Q 777
            + P+              E  +P   ++  LRRSTR H+P  +L+DYHC L         
Sbjct: 947  ISPHLDHTLSSSPSLDHIELNSPGQSVSSPLRRSTRVHKPPTYLQDYHCQLAHCVGSTSS 1006

Query: 778  GQVLNTTTLYSINNYLSYDKLSALHQNFIFNISSIVLPSYYNQA---------------- 837
              + ++ T Y ++  LSYD LS  H+NF  ++++I  PS ++QA                
Sbjct: 1007 PPIASSGTPYPLSTSLSYDHLSPTHRNFALSVTAISEPSSFHQANQNPHWQEAMFAELAA 1066

Query: 838  ------VNIVPLPNGHRVIGCKWVY-------------------RRYNQKEGIDFIDTFS 897
                    + PLP G   IGCKWVY                   + Y Q+EG+D+ +TFS
Sbjct: 1067 LEANNTWTLTPLPPGKHPIGCKWVYKVKLKSDGSLERYKARLVAKGYTQQEGLDYSETFS 1126

Query: 898  PVAKIVTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFGY------------ 957
            PVAK  TV+ LL++ ++  W L Q+D+NNAFL+G+L EEVYM LP G+            
Sbjct: 1127 PVAKFSTVRTLLAVASAKNWSLTQLDVNNAFLHGDLAEEVYMALPLGFPSKGETSNLVCK 1186

Query: 958  ----YQDLKSSS-------SNTL-------SKSNYSLFTKGSGSSFIALLVYVDDILIIG 995
                   LK +S       S+T+       S S+YSLFT+  G  FIALLVYVDDILI  
Sbjct: 1187 LNKSLYGLKQASRQWFAKFSSTIIKQGFVQSHSDYSLFTRTQGIVFIALLVYVDDILIAS 1246

[Close]
BLAST of Clc04G01155 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-101
Identity = 221/571 (38.70%), Postives = 324/571 (56.74%), Query Frame = 0 

Query: 470 IVQNPSTTITTDSTKIIEPNNIVEPNEAANPPHDITVGLRRSTRRHQPVGFLRDYHCNLL 529
           +V +   + ++ S  I+   NI   N+   P       +  S RR +   +L+DY+C+ +
Sbjct: 1   MVSDADASTSSSSIDIMPSANI--QNDVPEP------SVHTSHRRTRKPAYLQDYYCHSV 60

Query: 530 QGQVLNTTTLYSINNYLSYDKLSALHQNFIFNISSIVLPSYYNQAV-------------- 589
                 + T++ I+ +LSY+K+S L+ +F+  I+    PS YN+A               
Sbjct: 61  A-----SLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIG 120

Query: 590 --------NIVPLPNGHRVIGCKWVY-------------------RRYNQKEGIDFIDTF 649
                    I  LP   + IGCKWVY                   + Y Q+EGIDFI+TF
Sbjct: 121 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 180

Query: 650 SPVAKIVTVKLLLSLTASFGWDLVQMDINNAFLNGELFEEVYMQLPFGY----------- 709
           SPV K+ +VKL+L+++A + + L Q+DI+NAFLNG+L EE+YM+LP GY           
Sbjct: 181 SPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPN 240

Query: 710 --------YQDLKSSS-------SNTL-------SKSNYSLFTKGSGSSFIALLVYVDDI 769
                      LK +S       S TL       S S+++ F K + + F+ +LVYVDDI
Sbjct: 241 AVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDI 300

Query: 770 LIIGPSPTEITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYRLQILEDSG 829
           +I   +   +  +K+ L+S F L+DLG  KYFLGLE+++S  GI I QRKY L +L+++G
Sbjct: 301 IICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETG 360

Query: 830 FLAVKPTSFPFASNLKLTATAGIPLNLDDASSYRRLIGSLLYLQISRPNVSFAVHKLSPY 889
            L  KP+S P   ++  +A +G   +  DA +YRRLIG L+YLQI+R ++SFAV+KLS +
Sbjct: 361 LLGCKPSSVPMDPSVTFSAHSG--GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQF 420

Query: 890 VAKPYSEHLSAAHHLLRYLKGTAGQRIFLAATNNFQLKAYVDSDWDSCLDTRRFVTDFCK 949
              P   H  A   +L Y+KGT GQ +F ++    QL+ + D+ + SC DTRR    +C 
Sbjct: 421 SEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCM 480

Query: 950 FLGDSLISWKSKKQATVSRSSAEAEYRAFAMVSSELTWVSHVLKDLHINFPALTLVFCDN 967
           FLG SLISWKSKKQ  VS+SSAEAEYRA +  + E+ W++   ++L +     TL+FCDN
Sbjct: 481 FLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDN 540

[Close]
BLAST of Clc04G01155 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 180.6 bits (457), Expect = 6.0e-45
Identity = 96/229 (41.92%), Postives = 140/229 (61.14%), Query Frame = 0 

Query: 688 LLVYVDDILIIGPSPTEITTVKTLLRSHFLLKDLGNAKYFLGLELSQSTMGIYISQRKYR 747
           LL+YVDDIL+ G S T +  +   L S F +KDLG   YFLG+++     G+++SQ KY 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 748 LQILEDSGFLAVKPTSFPFASNLKLT-ATAGIPLNLDDASSYRRLIGSLLYLQISRPNVS 807
            QIL ++G L  KP S P    L  + +TA  P    D S +R ++G+L YL ++RP++S
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP----DPSDFRSIVGALQYLTLTRPDIS 122

Query: 808 FAVHKLSPYVAKPYSEHLSAAHHLLRYLKGTAGQRIFLAATNNFQLKAYVDSDWDSCLDT 867
           +AV+ +   + +P          +LRY+KGT    +++   +   ++A+ DSDW  C  T
Sbjct: 123 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTST 182

Query: 868 RRFVTDFCKFLGDSLISWKSKKQATVSRSSAEAEYRAFAMVSSELTWVS 916
           RR  T FC FLG ++ISW +K+Q TVSRSS E EYRA A+ ++ELTW S
Sbjct: 183 RRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227

[Close]
BLAST of Clc04G01155 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 87.8 bits (216), Expect = 5.3e-17
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 796 LYLQISRPNVSFAVHKLSPYVAKPYSEHLSAAHHLLRYLKGTAGQRIFLAATNNFQLKAY 855
           +YL I+RP+++FAV++LS + +   +  + A + +L Y+KGT GQ +F +AT++ QLKA+
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 856 VDSDWDSCLDTRRFVTDFCKFL 878
            DSDW SC DTRR VT FC  +
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLV 82

[Close]
BLAST of Clc04G01155 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-04
Identity = 20/71 (28.17%), Postives = 38/71 (53.52%), Query Frame = 0 

Query: 572 NQAVNIVPLPNGHRVIGCKWVYRR-------------------YNQKEGIDFIDTFSPVA 624
           N+   +VP P    ++GCKWV++                    ++Q+EGI F++T+SPV 
Sbjct: 54  NKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVV 113

The following BLAST results are available for this feature:
BLAST of Clc04G01155 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7578768.13.5e-19636.50GAG-pre-integrase domain [Arabidopsis thaliana x Arabidopsis arenosa][more]
RVW51959.13.0e-19539.59Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
KZV25004.12.8e-19338.02Cysteine-rich RLK (receptor-like protein kinase) 8 [Dorcoceras hygrometricum][more]
RVW21404.11.3e-18739.66Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
KYP61022.11.3e-18738.22Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
BLAST of Clc04G01155 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94HW25.2e-10226.81Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT946.2e-9526.36Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109785.2e-8626.30Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.8e-6825.00Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P925198.5e-4441.92Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Clc04G01155 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9EL121.6e-19937.14Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9IF643.6e-19938.56Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9H2Y31.4e-19836.79Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A438EW681.4e-19539.59Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A2N9EHN74.6e-19436.33Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
BLAST of Clc04G01155 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23160.13.5e-10138.70cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.16.0e-4541.92DNA/RNA polymerases superfamily protein [more]
ATMG00240.15.3e-1747.56Gag-Pol-related retrotransposon family protein [more]
ATMG00820.11.8e-0428.17Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 281..451
e-value: 5.0E-28
score: 99.7
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 588..676
e-value: 6.6E-18
score: 65.2
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 25..62
e-value: 1.6E-7
score: 31.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..145
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 290..459
coord: 592..849
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 853..990
e-value: 1.47282E-61
score: 203.469
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 266..433
score: 14.698673
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 577..960
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 287..427

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G01155.1Clc04G01155.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding