Clc04G00170 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G00170
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	exosome complex component RRP43
Location	ClcChr04: 400360 .. 409171 (-)
RNA-Seq Expression	Clc04G00170
Synteny	Clc04G00170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTGCCACGGCGCCAAAGTTCGACGCAACATTCTGAATGCATTACAGCGTCGCGGCGCTTGGACGGCGTTGCCGCAATGCTAATGCCCGAGAGCAATAATTCTAAACGCATCACAGTGTCGAGGCGCTTGGACAGCACTGCCGCGACACTAAAACCCGAAAGCAACAATTTTGGACACAACCCTAGCGTCGCGGCGCCAATTTCCTTAAATGAAAATTTGTTATTTTTGGTAAATTTTTGGGCGGCCAACTCTATAAATTTGGGGGTTTCCAACAGCCCTAATCATCAAATCAAATCAAGAATCAATCAACCATCGATTTATAGACCTAAAGAGGCACAAAAAGGAGAGAATTGAGTGAGAGTTCATAAAAGAGTTCAAGGAGTGAGTTAGTTGCAAGGAAGAGGAAAATAGTTCGAGCCTTAGAACGGATGATGGGATCCAAATTCTAGTAGAAAATTGGAGCAAAAAGTGTACAAAAACTTGTTTTGGTTGAGAGAGAAAAAACTTCCCGTAAAGTTCTCTCTTCAAAAGCACTCTTTTCCCTTCAACTTTTTCTTCTTTTTATTTTAAAGAGTAACTTATGCATCATCAAAATCTCCCTATTGAAGAACATGATAACTTGTAGAAATATAAGTTATTATATTCATTATTTGGAGTAATTAGAGTAAAATTGATGATAGACGCATGATTTTAGCACTTGAATCGTATGATATGAATAACTTTGCGTTCACTATGCTTACAAAAGAATGTATCTTGGAAATTATGAAATTCTATCTTTTTGAACGTAGGATAGAACCAAAAGGAGCTCAAAATATAAAGGAAATGATGCTGTAAGAAAAGACCAACACGTCGAGAATCATGTGTCCAAAAGATAAATAATACAAGTGCTTAGCCGGCAACTGTCATGTTAATATGCAAGTGAGCAACTGATTTTACCAGATCATGACAGATCCAATGAACTGAAGACGTGAAGAAATCGGTGTAGCAGGGCATGGAATTAAATACAAAGGTGTCAGGTCATCATGATATCGCCTTTTCGACGCCTATAAATAGCCCATTGCACTTCATGTTCAAGTAGAGAGAAAATACTCAATAGTGAAAGCTTTGCGCAAATTCTCGCTCAACCTCCATAGTCATCCTCCATTTCGAGCTTTTTTGTGAGAAGATTCTGAAAGTGTTCAGAGTTCCCTTTCAGAGAGTGAAAATCCACCCTTGTATAAATAATGTATCAGATAGCCACCATCTCAAGCCTCCAAAAAGCAAGACATTGTCATTGGCGGTTTGACGACTTCCCTTTTCTTTTCTTCATTATGAACACATTTCTTACTTGTATTTTGTTAATAACTTTCGAGAGATTGAATTGTTTACTTAATACAAGTTCGATTGACATTATACTTCCATTTATTCTCATTTGTAACATTACACCATGAATATTGAATGTTTCATGAGTTAAGCATAAGTTTTAGTATTTCCAAATGTGATTAAGTTACTTTCATCTTGATTGAATGGGTACTTCAAACTTGCTTGAATCTATCAAACAAATAGGTCTGAGTGAGTATAGTTATCTGCTTGAGAGAGACAGTGAGTAATTTCCAACATTTAACAAGAAAAGAGTAGGCTTTAGAGATAAAGTTTTTCTTTTGCCTCAAGAGCTCACCATGTGTCTTAGAAATAAGATTAATGTGGCGTCGAAGCATCAAGAGATGCGTTTTCAACTTTGAGTTTGTAAGTATGAAAAATCACTTGTCGCTTAGGAAAATACTATTTACTTAACTTAACTTACCCTTTTTCATTGGTCCATTCATTTTATACCTGCTATCTGATCTTGTTTATACTTGACTAACTTCATCCATCATTCCTTCCACATCGCCATCCCACATGTTCATCCATTAATTTATTCTTGTATAAAAATATTCTTTGTAGTTAATTCAAAAAACAACACAATTGTAATTATTGTATAGTTCCAACGCATCAAATCAGGGATTGATCTTAACACATAGTCAGTACAAATCTCTGTTTTTGACCCTAGACTCTCCATGAAAACCTATTTAAACTTATACTTGGGTTTTTATAGGAAAACTTGCGTCTAACGTATACATCTTTCTTGATTCTTAACGCGGCATTAGGCCATTATGATCATAACACATCATACACATTTTTAAAAGCAACAGGACACCACAATGTGTGAATAAGGTGCTTGAAGAAGAAAGTGGAAGATTAAATTTGCATGTGAATGAGAGGTTTCCACCTCCTCCTTTACCATGCAACTGAAAGCAATGTTTTCAATTTGAAAAATTGAGAAATCAATTTTGATTTCATAAATCAAAATTTCAATTTAATATAATTAATTTAAATAATAATTAATTAACCAATTAATTAATTATATTAAATTAATATTAAATTAATACTTTCCATTTTTTCAACAACTTTAAAATTGATGAATCTCTATTCATTGGTATAATATTTAAATCACATTAAAATATTATTAAAAAATCTCATTTCGTCTAATTAACTATTAAACAAACCAAAATATAAAATGCTCATTTTTCTAAAATTTGAACACTTCAAATTGTCTCAATATACTGTTTTAAGATTTAGTCCACGAGCTAATAAGGAGACCTAATGGACCTACAAATCATGAGCTCCAACGATCTGAAATTAATCGGTGAAACTCTTTAACCTAGTTAATTGACATTCGTTAATTACTGGATCACTCCACTAAAGCCCAGTAGCTGCACTCTTCTCACTATAGATATATTTTTGTCCATTTGATATAACCATAATTATTAAGTTAATCCTTCACATGTTGTTTGTAATTACAGCTGGATCAAAATACCGTTTTACCCCTGTAATTACTTCTTGTTCCTTAAGTCCTACTAATCCTCTAATGAACAATTGGTTTGTGGTCCAACAACAAACCGAGTCCCTCTCTAGCCAATGAAAAAGTGGGGCCTCTTGTTCAAGATCTAGATTCAGTACTTAAGGGAACAACTTATCTACTATCATTTAATAAGGTAGAGGCGAATTTCATATTGCAGGACTATGTCCCCAGCTATATGCCTGATCTTATCCCTAAAATGGGAGGCATATTGAGTCAACAAGCTGGCCACTCTCACCCATGTAGATTAAAAGATAATTTCAAACAAACAGAAGTTCAAAGTTAGCTCAGGATTAAGATCGAGTTACTTAGGTCATCAGGTTGAAATAATCAATTTTAACAGTAAACTGTGTTATAGTAAACATGATTATTTCGTAGTCCAGTCTTATGCAAACTCATTGCGTAGGATACCCCCACTCACATGTCTCTACATGAACGATTTAGGATCACATCGTTTGTATAAAATACTAAGTGGGCCGTATCCATAGTGTCCCCAGGATAAGGTACCCAACCTTTATCCATACACTATAGACCATTTAGGTTATTACTTAAACTTGATCCACTTTTATCATATAAAGTTTAAGCATTCACCATATAGCCCATGGGTTCTTAGTTTATTGGATTTAAATGCAATTCACATATTCAATAACAACTTTACTGAATAAACCTCAATAACAACTTTATTGAGAATAAAATCCATAAATTACAACCAACGAGTTCTAGGACATAAAACCCAACAGTATGTAGATGATATCCTACTCATCGGGAACAATGTAGGGCTTTTTACTGACATTAAAATCTGGCTATCTGCTCAATTCCAAATGAAAGATTTAGGAGAAGCGTAGTATGTTATTGCCATTCATATCATAAGAGATCGCAAGAACTAAACGCTAGCTTTATCTCAAACATTTTATAGGTAATTTGCCTTTCAAACATTGAATTATTTTGTTAAAGGAATAATGTCCCAAGACATCTCAAGAGGTTGAGGATATGAGACGTATACCCCATGCATCAGCTGTGGGCAGCCTCATGTATGCAATGTTGTGTACAAGACCTAATATATGCTATATGCAGTTGGGATTGTTAGTAGATATCAATCTAATCCAGGATTTAATCACTGGACAACAGTAAAAACAATTCTCAAGTATCGTAGGAGAACGAGAAACTATATGCTTGTGTATGGCAATAAGGATTTGATCCTTACAGGTTACGCTGACTCTGATTTTCAGATTGATAAGGATTCTAGGAAATCTACATCAAGATCAATGTTCACTCTTAATGGAGGAGCTATAGTTTAGAAAGCATCAAATAAGAATGCATAGTTGGGAGGCCGAATATGTAGCTGCTAAAGAAGTTGTATGGTTGAGAAAGTTCTTGATAGATTTGGAAGTGGTTAAGGATGGTTTGGGCATGCGGCCATAAGCAAATACGCCCTCGACAAGCATGCTCAAAGACACAATGCAGCTATATTTAACTAGTTTAGGTTAAGTGGCGTGTGAGTGGGAAAAAGAAATTGTGAAACTTCAGTCTTGCTTCACGAACGCCGCGCGAACAGACATCCATTTCGCCACTCTCTCTCTCTCTCACGCGAACTCTCCCTCGCCGCCATCCGCTGCTCGCAGCCACTCTGCCTCCGCCGCCAGCCGCTCCGCCTCCGCCCGCCGTCGACCGCAGGTGAGAGCTTCTCTACCGTCTCTCTCTCTCTCTCTCTCTCTCTAAGATCTATTCTTTGCACAATGTTGCCTCCGTTGCACCGCCACCAGCCGAGCGCCCTGCTCCACCCTGTTTGGAATGGATTTTTTTTCTTTTTCTTTTTCTTTTTGTTTTTTTTTTTTAAAAGCAAGATTTCCAATCACAACTGGTTTCCAATTTCTGTAAAACAGACAAGATTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCAGAAATGGAAGTTGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCGGAATCAATACGTCCTGATGGAAGAGCACTTGGAAAAGCTAGAGACACAACCATTGCCCTTGGTTTGTTTTAGGCTTTGATTTTCAGTAATTTGCCATTTCTTACCATTTGCAGCTTGTGTTTATCATCACGAGTTTACTTGATTAATTTTGACTCTCAAAAACTGAATTTGGGTATCTTCTATTCATTTAGGACCGGTATCATCTGCAAATGGGTCAGCCCTGGCTAAGATTGGTTCGACGGTGAGTGCCTCCACACTTAACCTTATCATATGTGCTAGGGTTTTGTGACGGTTTGTTCTTAATTTGATATAGTGCAGACAATGTTGGCTGCTATTAAAATGGAAGTCATGACGCCTTCTATAGAATCACCAGATGAGGGTTGCATAGGTTGGCCATTGTCAATTGCTAAATATTTTTGGTCATTGTTCATCATAATCTTTATGGTAACATCCTTTACATTTGAGTGATATCGAGTCTATCTTTTTCCAGCTGTCGATTTCCACATGCCTCCAATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCGAGGTACCATTTCACATTTTTTGCAATTTTTACTTTCACAGATTGCAATTTGCAGCTGATATTCTTCGGTTAAGTGTGGATGGCAATCAATCTTTAGAAAATATTTTGAATGCTACTGAAGTGTTTGAGATGGCATTCCCACTTTAAATTTAGAGGAAAGAGAGTTTTCGTATGAACAATCTCAATAATCATTTTAAACACAACAAGAAGATTTATCCAAAGAACCTTGGCAAATCTTGAGGCAGTTTCAAATATGATCTTTGCTACCGGAGTATAGGTACTGAAGATCTCAACCATATCTTTCTTTACTGCTACTCGGGAGATTTGGCAATTGGTGTGTTGAAAGAGTTTGAACTATTTTGGATTTTTTCTAAAGTGTCCTCTCCTACTTTTTGTCAACTGCTTTATGGAGCTCCTTTCAAGAGGCAAGACAAAAACTCTCATGGGGGTGGTGAAAGCTTGTAGAAAAATAGTCTTGAAAGAAACAAAAGAGGCCTTTTGGAGGCAAAAGAGAAAATATGAGTGGACTGTGAGAGATTTTGTAGGCAAAGAAGAAATCTTTGGGAGGATTGCTGGATGGGGATGAGCTTCTTTGTACCTTGTTTATGCGGATGTATCACTTCTCGAACAAGAAGTTACATCCAGTTGTCTCTGTGTTGCCTTCCTCAAATCCTTCTTCCTCCATCTCTTTGGGTTTCCAAAGACCTTTGACAAATTGAGAGGTAATGGAAATGACAAATCTTCTTTCCCTTCAAGATAAATTTGTGGTTCCGTGGGAGAAGGGATGTTGAGTTTTGGGCCCAAAATCCTTCTAGGAACATCTCTTGTCATTCCCTCTTTCATCTTTTCTCTTTCCTTTCTCCCTCTATTGCCGACCCTGTCCTTTTACTCTCTTTGGAAGGTTAAAATCCCAAAGAAGGTTATGATTTTTGTGTGGGAGATTTTACATGGGAGCGTCAATACCATGGATTGCATTGAAAGACACTCTTCCTTAGTTTTGTTACTGCAATAGTGCATTTTCTGTAGGAGTCACAAGGAGGATTTTGACCATCTTTTTTGGGGTTGTTAGTTTGCTCACTTCATTGGAGTCACTGGTTGAGATTGTTTGTGCACTTTGAGGTTTGTTGGGTGTGGCATAGAGACGGCTGTACTCAGGAGGAAGTGCTCTCGACCCTCCCTTAAAGGAGAAGCTTTCAGCATTGTGGCAAGGGAACCTATTTACTATCCTGTGGGGGATTTGGAGGGAGAGGAATAATAGAGTATATAGAGGTTGAAAGATCGAGTGAGGATGTTCGGGAGTTGGCTTGATTTAACACTTTCTAATGGGTGTCGGTTACTAAACTTTTTTGTAATTGTGAGCTTAGTCTTGTTCTTTTGGGTTGAAATCCGTTTTAGTAGCTTGCATCGGGCCCCTTCCTTTTTTGTTGGGCTTATTTCTTTTGTATGATCTTGTATATTCGCTCATCGTTTGAATGAAAATGCGGTTTCATTTAAAAAAATTTTGTGGGAGGTTTTCAATGTTAATGCTTCTGGTACTCTGGATCAAAACTCTTTGATTGCTATGTTATTCTCCTGTTGGGTAGAACTATTGTTGGGATTTTCTGTAACCTCTTTTTGTTGTAGTTTGGGAAATGTTTGTTCGATAATGATAAGTTCTCTATCTTAAATTTTCTTAAAAAAACTAAACTATTGCAAACTATTCTATTTGCAATATTGTGTTTCTCATTACTTCATAAGCAAAGTAAATCTGGTAAAAGGAATGTGATACACTTTTTTGGTTTCTGATCTCTTATGTATGGTCAATTTCCTTTCAATCTAACTGACTAATCAAGATATTGATGATGTGAATTCTTCAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGTAAATTCATGCATTGTCAATATATTTATTTTTATTCTAGAAGTATCTTGGTGTTTGAAGTAAGGTTCCTTTACCGATGTATCTTTATACTTTGTTTCTAAAATTTTTTCTCGCAGCATCCTTACTCGTACTGGACATTCTCTCTATAGCTTGATTTTTGGCCAGAATGCAGATTTATTATTGCAGTTAATTATTTTAGATGAGATAGCAACTTGACATGTGTTCCACAGGATATTTACTGTTTGGATGCTGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGTTTCAGGCTCTCAACTTGTTCCCAACTTGATATATTTCTGTATGATTGGGTAGATGTTATGCTAATGGCAGTAATGTCGGTTATGGTGGGATGTTCCTCTGCCATTAACATTAAAAATAGTTTTTCAGTTCATAGATTGATACTTTATGCTTTTAATCCTTTACATTTCAGAATTTTGTCCCTCTTTAGATTCCTTTTGTTGTTATCAAAATTTATCAAGAGGAGGCTGTTTAATGCTCTTTGTAATTAGGTGCTTTCTTGTATTTCATTATATTATATGTTTCTCTTCCTTATGCCTTCACAAGTGGGGTTTGGATTTGGAACGTATGATGAGAAATTTTTTTGGGAAGGGGTTGAGAGTGGTGAAATCAACCATTTGGTTAGATGGAACTTTGTGTCACTACTAAATCTTAAGATGATGGAGGTTTAGGCATTTGGAGGTTTAAAACAAAGAAATATCATAACTCTTGCTAAGTTGGGTTGGAGGTGGTTGTCGACCGTACACTACTTCAAATGGGGACTTTTTAAGAGATGTGTGATAGGATGTATTGTAATTAAATTCTGCCCACGGTACCTATTTAGCCCATTTCACCGGTGTGCTCATCGCAAAACATCTGAGATACACCTCTAAGCCTTGATTCACTATTTTGGTCTGATCGTCTGTCTGAGGATGATAGACGGTGCTTCGTTATAAATGTGTACCCATCAAACAAAATAGCTCCTCCCAAAATAAACTGGGGAATACTTTGTCTCTATCAAACACAATGCTCTGAGGTACACTGTGTCAACACACGGTTTCTTTAAGAAAAAAAGCTGCTGCAGTCAAGGTTGTATATGGATGCTTTAGAGTAATGAAGTGTGCGTATTTTGACAAGCGATCCACAACTACAAGAATGGCGCTGAAGTTGTCCAACTTTGGCAACCCATCAATAAAATCCATGGTTATATCATCCCAGATATGTTTCGGAATTGGTATCGGTTGTAATAATCCAGTCGATGTCAAGGAAAAGTATTTGGCTTGCCGAAAAACGACACAATCTCCCACAAAAGCTCACCTTCGCCTTCATCCCGCACCAAACAGCTCTTTCTTCAATTGTTGA

mRNA sequence

ATGGCGCTGCCACGGCGCCAAAGTTCGACGCAACATTCTGAATGCATTACAGCGTCGCGGCGCTTGGACGGCGTTGCCGCAATGCTAATGCCCGAGAGCAATAATTCTAAACGCATCACAGTGTCGAGGCGCTTGGACAGCACTGCCGCGACACTAAAACCCGAAAGCAACAATTTTGGACACAACCCTAGCGTCGCGGCGCCAATTTCCTTAAATGAAAATTTGTTATTTTTGGACTATGTCCCCAGCTATATGCCTGATCTTATCCCTAAAATGGGAGGCATATTGAGTCAACAAGCTGGCCACTCTCACCCATTTGGGATTGTTAGTAGATATCAATCTAATCCAGGATTTAATCACTGGACAACAGTAAAAACAATTCTCAAGTATCGTAGGAGAACGAGAAACTATATGCTTGTGTATGGCAATAAGGATTTGATCCTTACAGGTTACGCTGACTCTGATTTTCAGATTGATAAGGATTCTAGGAAATCTACATCAAGATCAATGTTCACTCTTAATGGAGGAGCTATATCTTGCTTCACGAACGCCGCGCGAACAGACATCCATTTCGCCACTCTCTCTCTCTCTCACGCGAACTCTCCCTCGCCGCCATCCGCTGCTCGCAGCCACTCTGCCTCCGCCGCCAGCCGCTCCGCCTCCGCCCGCCGTCGACCGCAGACAAGATTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCAGAAATGGAAGTTGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCGGAATCAATACGTCCTGATGGAAGAGCACTTGGAAAAGCTAGAGACACAACCATTGCCCTTGGACCGGTATCATCTGCAAATGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATTAAAATGGAAGTCATGACGCCTTCTATAGAATCACCAGATGAGGGTTGCATAGCTGTCGATTTCCACATGCCTCCAATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCGAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGATATTTACTGTTTGGATGCTGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGTTTCAGGCTCTCAACTTGTTCCCAACTTGATATATTTCTTCAAGGTTGTATATGGATGCTTTAGAGTAATGAAGTGTGCGTATTTTGACAAGCGATCCACAACTACAAGAATGGCGCTGAAGTTGTCCAACTTTGGCAACCCATCAATAAAATCCATGGTTATATCATCCCAGATATGTTTCGGAATTGGTATCGGTTGTAATAATCCAGTCGATGTCAAGGAAAAGTATTTGGCTTGCCGAAAAACGACACAATCTCCCACAAAAGCTCACCTTCGCCTTCATCCCGCACCAAACAGCTCTTTCTTCAATTGTTGA

Coding sequence (CDS)

ATGGCGCTGCCACGGCGCCAAAGTTCGACGCAACATTCTGAATGCATTACAGCGTCGCGGCGCTTGGACGGCGTTGCCGCAATGCTAATGCCCGAGAGCAATAATTCTAAACGCATCACAGTGTCGAGGCGCTTGGACAGCACTGCCGCGACACTAAAACCCGAAAGCAACAATTTTGGACACAACCCTAGCGTCGCGGCGCCAATTTCCTTAAATGAAAATTTGTTATTTTTGGACTATGTCCCCAGCTATATGCCTGATCTTATCCCTAAAATGGGAGGCATATTGAGTCAACAAGCTGGCCACTCTCACCCATTTGGGATTGTTAGTAGATATCAATCTAATCCAGGATTTAATCACTGGACAACAGTAAAAACAATTCTCAAGTATCGTAGGAGAACGAGAAACTATATGCTTGTGTATGGCAATAAGGATTTGATCCTTACAGGTTACGCTGACTCTGATTTTCAGATTGATAAGGATTCTAGGAAATCTACATCAAGATCAATGTTCACTCTTAATGGAGGAGCTATATCTTGCTTCACGAACGCCGCGCGAACAGACATCCATTTCGCCACTCTCTCTCTCTCTCACGCGAACTCTCCCTCGCCGCCATCCGCTGCTCGCAGCCACTCTGCCTCCGCCGCCAGCCGCTCCGCCTCCGCCCGCCGTCGACCGCAGACAAGATTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCAGAAATGGAAGTTGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCGGAATCAATACGTCCTGATGGAAGAGCACTTGGAAAAGCTAGAGACACAACCATTGCCCTTGGACCGGTATCATCTGCAAATGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATTAAAATGGAAGTCATGACGCCTTCTATAGAATCACCAGATGAGGGTTGCATAGCTGTCGATTTCCACATGCCTCCAATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCGAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGATATTTACTGTTTGGATGCTGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGTTTCAGGCTCTCAACTTGTTCCCAACTTGATATATTTCTTCAAGGTTGTATATGGATGCTTTAGAGTAATGAAGTGTGCGTATTTTGACAAGCGATCCACAACTACAAGAATGGCGCTGAAGTTGTCCAACTTTGGCAACCCATCAATAAAATCCATGGTTATATCATCCCAGATATGTTTCGGAATTGGTATCGGTTGTAATAATCCAGTCGATGTCAAGGAAAAGTATTTGGCTTGCCGAAAAACGACACAATCTCCCACAAAAGCTCACCTTCGCCTTCATCCCGCACCAAACAGCTCTTTCTTCAATTGTTGA

Protein sequence

MALPRRQSSTQHSECITASRRLDGVAAMLMPESNNSKRITVSRRLDSTAATLKPESNNFGHNPSVAAPISLNENLLFLDYVPSYMPDLIPKMGGILSQQAGHSHPFGIVSRYQSNPGFNHWTTVKTILKYRRRTRNYMLVYGNKDLILTGYADSDFQIDKDSRKSTSRSMFTLNGGAISCFTNAARTDIHFATLSLSHANSPSPPSAARSHSASAASRSASARRRPQTRLQTMGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEVSGSQLVPNLIYFFKVVYGCFRVMKCAYFDKRSTTTRMALKLSNFGNPSIKSMVISSQICFGIGIGCNNPVDVKEKYLACRKTTQSPTKAHLRLHPAPNSSFFNC

Homology

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BLAST of Clc04G00170 vs. NCBI nr
Match: XP_008460772.1 (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 347.4 bits (890), Expect = 2.1e-91
Identity = 175/183 (95.63%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 230 LQTMGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPV 289
           +QTMGLPNAASGDLSS+MEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPV
Sbjct: 10  VQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPV 69

Query: 290 SSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAA 349
           SSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAA
Sbjct: 70  SSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAA 129

Query: 350 PVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH 409
           PVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH
Sbjct: 130 PVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH 189

Query: 410 CEV 413
            ++
Sbjct: 190 LQI 192

[Close]

BLAST of Clc04G00170 vs. NCBI nr
Match: KAA0043544.1 (exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 7.9e-91
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 227 QTRLQTMGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL 286
           Q  +QTMGLPNAASGDLSS+MEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL
Sbjct: 115 QIIVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL 174

Query: 287 GPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPA 346
           GPVSSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPA
Sbjct: 175 GPVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPA 234

Query: 347 EAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA 406
           EAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA
Sbjct: 235 EAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA 294

Query: 407 FSH 410
           FSH
Sbjct: 295 FSH 297

[Close]

BLAST of Clc04G00170 vs. NCBI nr
Match: KAG7033523.1 (Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.4 bits (882), Expect = 1.8e-90
Identity = 175/180 (97.22%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 233 MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 292
           MGLPNAASGDLSSEMEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 293 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 352
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 353 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 412
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH ++
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

[Close]

BLAST of Clc04G00170 vs. NCBI nr
Match: XP_023544252.1 (exosome complex component RRP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.4 bits (882), Expect = 1.8e-90
Identity = 175/180 (97.22%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 233 MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 292
           MGLPNAASGDLSSEMEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 293 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 352
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 353 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 412
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH ++
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

[Close]

BLAST of Clc04G00170 vs. NCBI nr
Match: XP_022928740.1 (exosome complex component RRP43 [Cucurbita moschata])

HSP 1 Score: 344.4 bits (882), Expect = 1.8e-90
Identity = 175/180 (97.22%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 233 MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 292
           MGLPNAASGDLSSEMEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 293 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 352
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 353 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 412
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH ++
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

[Close]

BLAST of Clc04G00170 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.9e-31
Identity = 64/161 (39.75%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 252 FRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 311
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 312 EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 371
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 372 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 413
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  + ++
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQL 165

[Close]

BLAST of Clc04G00170 vs. ExPASy Swiss-Prot
Match: Q9D753 (Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-31
Identity = 63/161 (39.13%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 252 FRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 311
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 312 EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 371
           E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 372 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 413
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  + ++
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQL 165

[Close]

BLAST of Clc04G00170 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-29
Identity = 62/161 (38.51%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 252 FRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 311
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 312 EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 371
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 372 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 413
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  + ++
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQL 165

[Close]

BLAST of Clc04G00170 vs. ExPASy Swiss-Prot
Match: Q10205 (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp43 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-24
Identity = 58/155 (37.42%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 252 FRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 311
           F+++ P Q+    L + +R DGR++ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 312 EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 371
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 372 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA 407
            + + KAAW+ Y DI CL+ DGS FD A  +  AA
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAA 171

[Close]

BLAST of Clc04G00170 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-23
Identity = 58/149 (38.93%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 270 RPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVD 329
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +AV+
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 330 FHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 389
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 390 DADGSLFDAALLSAAAAFSHCEVSGSQLV 419
           D DG+LFDA+++ + +A S  EV  +++V
Sbjct: 143 DHDGNLFDASMIGSVSALSITEVPKAEVV 171

[Close]

BLAST of Clc04G00170 vs. ExPASy TrEMBL
Match: A0A1S3CD66 (exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.0e-91
Identity = 175/183 (95.63%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 230 LQTMGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPV 289
           +QTMGLPNAASGDLSS+MEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPV
Sbjct: 10  VQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPV 69

Query: 290 SSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAA 349
           SSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAA
Sbjct: 70  SSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAA 129

Query: 350 PVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH 409
           PVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH
Sbjct: 130 PVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH 189

Query: 410 CEV 413
            ++
Sbjct: 190 LQI 192

[Close]

BLAST of Clc04G00170 vs. ExPASy TrEMBL
Match: A0A5A7TJQ5 (Ribosomal RNA-processing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00390 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 3.8e-91
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 227 QTRLQTMGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL 286
           Q  +QTMGLPNAASGDLSS+MEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL
Sbjct: 115 QIIVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIAL 174

Query: 287 GPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPA 346
           GPVSSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPA
Sbjct: 175 GPVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPA 234

Query: 347 EAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA 406
           EAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA
Sbjct: 235 EAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA 294

Query: 407 FSH 410
           FSH
Sbjct: 295 FSH 297

[Close]

BLAST of Clc04G00170 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 8.5e-91
Identity = 175/180 (97.22%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 233 MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 292
           MGLPNAASGDLSSEMEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 293 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 352
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 353 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 412
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH ++
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

[Close]

BLAST of Clc04G00170 vs. ExPASy TrEMBL
Match: A0A6J1DFM7 (exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.4e-90
Identity = 174/180 (96.67%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 233 MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 292
           MGLPNAASGDLSSEMEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 293 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 352
           NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 353 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 412
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH ++
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

[Close]

BLAST of Clc04G00170 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 1.9e-90
Identity = 173/180 (96.11%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 233 MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 292
           MGLPNAASGDLSS+MEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 293 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 352
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 353 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 412
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH ++
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

[Close]

BLAST of Clc04G00170 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-77
Identity = 143/180 (79.44%), Postives = 166/180 (92.22%), Query Frame = 0


Query: 233 MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 292
           MG+P+AA  DLS+EMEVDAFRR+FP++F+ERHL+ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 293 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 352
           +GSALAKIGSTTMLAAI+MEVMTPS +SPDEGCIA++FHMPPICSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 353 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 412
           SK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+ ++
Sbjct: 121 SKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQI 179

[Close]

BLAST of Clc04G00170 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-12
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 260 FYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIE 319
           F +  +A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 320 SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 379
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 380 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 413
           +GK  W  Y+D   + +DG+L DA   +  AA ++  +
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAI 167

[Close]

BLAST of Clc04G00170 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-12
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 260 FYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIE 319
           F +  +A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 320 SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 379
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 380 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 413
           +GK  W  Y+D   + +DG+L DA   +  AA ++  +
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAI 167

The following BLAST results are available for this feature:

BLAST of Clc04G00170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460772.1	2.1e-91	95.63	PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]	[more]
KAA0043544.1	7.9e-91	96.17	exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa]	[more]
KAG7033523.1	1.8e-90	97.22	Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023544252.1	1.8e-90	97.22	exosome complex component RRP43 [Cucurbita pepo subsp. pepo]	[more]
XP_022928740.1	1.8e-90	97.22	exosome complex component RRP43 [Cucurbita moschata]	[more]

BLAST of Clc04G00170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96B26	1.9e-31	39.75	Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1	[more]
Q9D753	2.5e-31	39.13	Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1	[more]
Q2KHU3	3.1e-29	38.51	Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1	[more]
Q10205	1.3e-24	37.42	Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q8TYC2	1.5e-23	38.93	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of Clc04G00170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD66	1.0e-91	95.63	exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A5A7TJQ5	3.8e-91	96.17	Ribosomal RNA-processing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1ESF5	8.5e-91	97.22	exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE...	[more]
A0A6J1DFM7	1.4e-90	96.67	exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 P...	[more]
A0A1S3CEE1	1.9e-90	96.11	exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]

BLAST of Clc04G00170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60080.1	1.1e-77	79.44	3'-5'-exoribonuclease family protein	[more]
AT3G07750.1	3.5e-12	31.65	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	3.5e-12	31.65	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 248..472 e-value: 1.8E-52 score: 180.4
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 280..410 e-value: 2.8E-20 score: 73.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..241
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 253..412
IPR033196	Exosome complex component Rrp43	PANTHER	PTHR11097:SF9	EXOSOME COMPLEX COMPONENT RRP43	coord: 253..412
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 250..414

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G00170.1	Clc04G00170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
biological_process	GO:0006401	RNA catabolic process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)