Clc04G00160 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G00160
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr04: 394962 .. 397648 (-)
RNA-Seq Expression	Clc04G00160
Synteny	Clc04G00160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAACTTCAGAAACAGTGTCCATGGTCCCCTATTTCTCCCTCGTGGTGCTGTCTTTGCAGAGAAGATAGTGATTCACAAAAGCATATTTTCTTCAATTGTCAGTTTGCTGTTGATATCTGGGCTGCTCTGTTTTCTGCTTTTGGTTGGCATGTTGCCCCTCCTTTAGGCTTCATTGGTTGGATCAGAATGCTGTTCGATGAGCACCCCTTCAAGGCATCTAAACAATTTCTATGGGAGAGTATTGTTTGTGCTGTTTTATGGAAGATTTGGAACGAACGAAACACAAGGATCTTTTAGGACAAAGAAAGATCTAGGGAAGTGCTCGATCTTGCCATTGTCGATGCTTTTTTTTTTGGGTGTAAAAGTATACAACCCTTTACTAGTCACAGCTTAAATCTTCTTGTAGCTAATTGGATAAATCTTTTATAATCCCTTTTATGGCCCTTTTGTATCTCGTGGGATATTTCACTCATCAATAGAATTTTTTATTATCCCAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAGAAAACAAACATCTTCATTGGCTTGACTGTTTGAGTCCTCTATATTTTATAGACTACTCAGTGTCTTTATCCAAGATATATGCTGACTTTTCTTTATAGGATGCTAAATTGGAATGTTTTAATCTTTCCTATATAATTTAGTTGTTATTTGTATTCATTCTTGTTTCCTCATTTACTCCTATGTGGATTTTATATCTTTTGAGAATTAGCCTCTTTTCATCTCATCATTAAAAAGTTTAGTTTCTTGTTAAAAGGGGAAAAAATAGAAAAAGAAAAGAATGAAGAATGTGAATTACCATATAGTTAGGCTAGCAAAGAGGCATTGTTGACAAGTATATTGGAAATATGGATGGACCACTGTTACTGCTCCATCATTCCTTCAATTGTCGTGACACTATGTATGAAGTAACACTTTCAAGTGGAGAAAGGCACTATAGATTGTCACACCCCGCCTCGAGTCATCCCTCCGTAGCCTGAGATGGGGCGTGAGGACAGCAGACACCGACCCTCTTGTGATGTCTACCGTTGAACCTTCACCCTTTCCAAACTAACATGTGTAACTTAGATAGGCAGAAAAAAACTGACTCATAATATATATGCATAACTCTATTATTACAGTTGGTTAACAAATTCTGATTCTAGTTTTTACTTTAAAATGCCGTCTACAACTAAGTGCACATTATTTCTCGGCAAACTTTGACTTCGTACAGTAACGAAAACTCGACTACTACTTAGAAAGAAAAACATAAGAAAAGAATGAGTTTTAATAAAGCCCAGTGAGTGATCGAATAAACTAGGGTTCAATCAACCTTTTTAGTATAATAGTAGTAATCATGATAACCATAATGTAAATCATACACAAGTATATCTATGCTATATCGAGCTTATACTCAAACCTTCCCCGTAGAATGATTCTTTGAATCTATTTTCTTGCTGGCACCTTTAGCACAACATCACCTCTGGTTATCCTGCTGGCTCACACGGCTCAGCAATCCTGACTGGTTTTTCTTGTTGGCCAACCCAGCTCAGCTAATCTCGGCCGGATCGGCATGAAAGAGACTAAAGTCCATGCCATACGAGACTAGAAGGTACCGACCTCCGTGACAGAACTGCGCTCCTTCCTCGGACTAGCCAACTACTATAGGCGGTTCGTGGAGGGATTCTCGAGGAAAACAGGACCGTTGACTAAGTTGTTGAAGAAAGATCACCAGTGGGGTTGGATCTCAGAGTGTCAAGCTGCCTTCGAAGACTTGAAGAAGGTCACGATGGAGGGGCCAGTTCTCGGAATTGCAGATGTAACAAAGCCTTTCGAAGTCGAAACTGATGCGTCCGACTTCGCCTTAGGCAGCGTTCTCCTTCAAGACGACCATCCCATTGCTTATGAGAATCGAAAACTAAACGATGCTGAAAGGAGATATGCAACATCTGAGAAAGAAATGTTGGCCGTTGTTCACTGTTTACGAGCCTGGAGACAATATCTGTTAGGCTCCAAGTTCGTAATCAAGACTGACAACAGCTCGATCTGCCACTTTTTCGCACAGCGAAAGTTGTCGTCCAAGCAAGCCCGATGGCAAGAGTGCCTGGCCGAATTTGATTTTCAGTTCGAGCATAGACCAAGAAAGGCCAATTAGGCGGCTGATGCCCTCAGCCGGAAAAGCGAACATGCAGCCCTGTGCTTGTTCGCCCAGTTAAAAGCCAGTAGTCTGAGTGGGACAGTCCGAGAAGCCATAAGAACCCACTTGGTCAACGACACAGCTGCCCAAGCCTTGATTCAACTGTCCGAAGAGGGGAAGACTCGTTAGTTTTGGGTGGAAGACGGCCTCCTCCTGACCAAGGGTAACCGCCTATATGTCCCTTGGTCAGGGGAGCTTCGAAGATTGTTAATGAAAGAGTGTCACGATACGCCATGGGCTGGACACAATGGGTGGCAAAGAACCTATGCGCTGTTGAAACAAGGCTACTGTTGGCCAAGTCTCCGGGATGATATCATGCCGTTCACTAAGACTTGTCTTGTTTGCCAACAAGACAAATCGGAAAGCGCAAAGTTAGCTGGTCTACTGGAACCCTTACTTGTACCCTCAAGACCATGGGATAGTGTGTCTATGGATTTCATCACACATCTACCTAAAGTTGGGAGTTCAAATCGATACCAGTGA

mRNA sequence

ATGGATAAACTTCAGAAACAGTGTCCATGGTCCCCTATTTCTCCCTCGTGGTGCTGTCTTTGCAGAGAAGATAGTGATTCACAAAAGCATATTTTCTTCAATTGTCAGTTTGCTGTTGATATCTGGGCTGCTCTGTTTTCTGCTTTTGGTTGGCATGTTGCCCCTCCTTTAGGCTTCATTGGTTGGATCAGAATGCTGTTCGATGAGCACCCCTTCAAGGCATCTAAACAATTTCTATGGGAGAAACTGCGCTCCTTCCTCGGACTAGCCAACTACTATAGGCGGTTCGTGGAGGGATTCTCGAGGAAAACAGGACCGTTGACTAAGTTGTTGAAGAAAGATCACCAGTGGGGTTGGATCTCAGAGTGTCAAGCTGCCTTCGAAGACTTGAAGAAGGTCACGATGGAGGGGCCAGTTCTCGGAATTGCAGATGTAACAAAGCCTTTCGAAGTCGAAACTGATGCGTCCGACTTCGCCTTAGGCAGCGTTCTCCTTCAAGACGACCATCCCATTGCTTATGAGAATCGAAAACTAAACGATGCTGAAAGGAGATATGCAACATCTGAGAAAGAAATGTTGGCCGTTGTTCACTGTTTACGAGCCTGGAGACAATATCTGTTAGGCTCCAAGTTCGTAATCAAGACTGACAACAGCTCGATCTGCCACTTTTTCGCACAGCGAAAGTTGTCGTCCAAGCAAGCCCGATGGCAAGACCGGAAAAGCGAACATGCAGCCCTGTGCTTGTTCGCCCAGTTAAAAGCCAGTAGTCTGAGTGGGACAGTCCGAGAAGCCATAAGAACCCACTTGGTCAACGACACAGCTGCCCAAGCCTTGATTCAACTGTCCGAAGAGGGGAAGACTCGGGAGCTTCGAAGATTGTTAATGAAAGAGTGTCACGATACGCCATGGGCTGGACACAATGGGTGGCAAAGAACCTATGCGCTGTTGAAACAAGGCTACTGTTGGCCAAGTCTCCGGGATGATATCATGCCGTTCACTAAGACTTGTCTTGTTTGCCAACAAGACAAATCGGAAAGCGCAAAGTTAGCTGGTCTACTGGAACCCTTACTTGTACCCTCAAGACCATGGGATAGTGTGTCTATGGATTTCATCACACATCTACCTAAAGTTGGGAGTTCAAATCGATACCAGTGA

Coding sequence (CDS)

ATGGATAAACTTCAGAAACAGTGTCCATGGTCCCCTATTTCTCCCTCGTGGTGCTGTCTTTGCAGAGAAGATAGTGATTCACAAAAGCATATTTTCTTCAATTGTCAGTTTGCTGTTGATATCTGGGCTGCTCTGTTTTCTGCTTTTGGTTGGCATGTTGCCCCTCCTTTAGGCTTCATTGGTTGGATCAGAATGCTGTTCGATGAGCACCCCTTCAAGGCATCTAAACAATTTCTATGGGAGAAACTGCGCTCCTTCCTCGGACTAGCCAACTACTATAGGCGGTTCGTGGAGGGATTCTCGAGGAAAACAGGACCGTTGACTAAGTTGTTGAAGAAAGATCACCAGTGGGGTTGGATCTCAGAGTGTCAAGCTGCCTTCGAAGACTTGAAGAAGGTCACGATGGAGGGGCCAGTTCTCGGAATTGCAGATGTAACAAAGCCTTTCGAAGTCGAAACTGATGCGTCCGACTTCGCCTTAGGCAGCGTTCTCCTTCAAGACGACCATCCCATTGCTTATGAGAATCGAAAACTAAACGATGCTGAAAGGAGATATGCAACATCTGAGAAAGAAATGTTGGCCGTTGTTCACTGTTTACGAGCCTGGAGACAATATCTGTTAGGCTCCAAGTTCGTAATCAAGACTGACAACAGCTCGATCTGCCACTTTTTCGCACAGCGAAAGTTGTCGTCCAAGCAAGCCCGATGGCAAGACCGGAAAAGCGAACATGCAGCCCTGTGCTTGTTCGCCCAGTTAAAAGCCAGTAGTCTGAGTGGGACAGTCCGAGAAGCCATAAGAACCCACTTGGTCAACGACACAGCTGCCCAAGCCTTGATTCAACTGTCCGAAGAGGGGAAGACTCGGGAGCTTCGAAGATTGTTAATGAAAGAGTGTCACGATACGCCATGGGCTGGACACAATGGGTGGCAAAGAACCTATGCGCTGTTGAAACAAGGCTACTGTTGGCCAAGTCTCCGGGATGATATCATGCCGTTCACTAAGACTTGTCTTGTTTGCCAACAAGACAAATCGGAAAGCGCAAAGTTAGCTGGTCTACTGGAACCCTTACTTGTACCCTCAAGACCATGGGATAGTGTGTCTATGGATTTCATCACACATCTACCTAAAGTTGGGAGTTCAAATCGATACCAGTGA

Protein sequence

MDKLQKQCPWSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLGFIGWIRMLFDEHPFKASKQFLWEKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQDRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRELRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSNRYQ

Homology

[Close]

BLAST of Clc04G00160 vs. NCBI nr
Match: XP_023537907.1 (uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444.9 bits (1143), Expect = 7.1e-121
Identity = 212/343 (61.81%), Postives = 257/343 (74.93%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFSR+  PLT+LLKKDH W W ++CQ AFE+LK     GPVLG
Sbjct: 890  ELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMTRGPVLG 949

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            + DVTKPFEVETDASDFALG VL+Q+ HPIAYE+RKLNDAERRY  SEKEMLAVVHCLR 
Sbjct: 950  LVDVTKPFEVETDASDFALGGVLIQEGHPIAYESRKLNDAERRYTVSEKEMLAVVHCLRV 1009

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLGS+FV+KTDNS+ CHFF Q KL++KQARWQ+                       
Sbjct: 1010 WRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADAL 1069

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTR--------- 321
             RK EHAALC+ A + +S + G++R+ I+ HL  D +A+A+++L++ GKTR         
Sbjct: 1070 SRKGEHAALCMLAHIHSSKIDGSMRDIIKEHLHKDPSAKAVVELAKAGKTRQFWVEGDLL 1129

Query: 322  -------------ELRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 379
                         ELR+ L++ECHDT WAGH GWQRTYAL+K+GY WP++RDDIM +TKT
Sbjct: 1130 ITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKT 1189

[Close]

BLAST of Clc04G00160 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 441.8 bits (1135), Expect = 6.0e-120
Identity = 216/343 (62.97%), Postives = 253/343 (73.76%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQAAF+ LK+  MEGP+LG
Sbjct: 865  ELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDGLKQALMEGPLLG 924

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            IADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN AERRY  SEKEMLAVVHCLRA
Sbjct: 925  IADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 984

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                       
Sbjct: 985  WRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADAL 1044

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-------- 321
             RK EHAA+CL A L+ S + G+VR+ +R  L  D AAQ ++ L++ GKTR+        
Sbjct: 1045 SRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLL 1104

Query: 322  --------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 379
                          LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Sbjct: 1105 VTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKT 1164

[Close]

BLAST of Clc04G00160 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 441.8 bits (1135), Expect = 6.0e-120
Identity = 223/349 (63.90%), Postives = 255/349 (73.07%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFS++TGPLT LLKK+ +W W  EC AAFE LKK  MEG VLG
Sbjct: 813  ELRSFLGLANYYRRFVEGFSKRTGPLTDLLKKNQKWNWTPECHAAFESLKKAMMEGSVLG 872

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            IADVT+PFEVETDASDFALG VLLQD HPIAYE++KLNDAERRYA SEKEMLAVVHCLRA
Sbjct: 873  IADVTRPFEVETDASDFALGGVLLQDGHPIAYESQKLNDAERRYAASEKEMLAVVHCLRA 932

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLG+KFV+KTDNSS+CHFF Q KLSSKQARWQ+                       
Sbjct: 933  WRQYLLGAKFVVKTDNSSVCHFFNQPKLSSKQARWQEYLAEFDFQFEHKPGRANQAADAL 992

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-------- 321
             RKSE AALC+ A LKAS L+G++REAIR +L ND AAQA+IQL+ EG TR+        
Sbjct: 993  SRKSEXAALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGXTRQFXVENDLX 1052

Query: 322  --------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 381
                          LR+LL+ ECHDT WAGH GWQRTYALLK+GY WPSLRDD+M +TKT
Sbjct: 1053 FTKGNXLYVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPSLRDDVMQYTKT 1112

Query: 382  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSNRYQ 385
            CL+CQQDK E  K+A LLEPL +PSR W+S   +       +G +  YQ
Sbjct: 1113 CLICQQDKVERNKIAXLLEPLPIPSRXWESARTN-------LGENEHYQ 1154

[Close]

BLAST of Clc04G00160 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.7e-119
Identity = 215/343 (62.68%), Postives = 252/343 (73.47%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LG
Sbjct: 891  ELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLG 950

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            IADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN AERRY  SEKEMLAVVHCLRA
Sbjct: 951  IADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1010

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                       
Sbjct: 1011 WRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADAL 1070

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-------- 321
             RK EHAA+CL A L+ S + G+VR+ +R  L  D AAQ ++ L++ GKTR+        
Sbjct: 1071 SRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLL 1130

Query: 322  --------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 379
                          LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Sbjct: 1131 VTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKT 1190

[Close]

BLAST of Clc04G00160 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.7e-119
Identity = 215/343 (62.68%), Postives = 252/343 (73.47%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LG
Sbjct: 895  ELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLG 954

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            IADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN AERRY  SEKEMLAVVHCLRA
Sbjct: 955  IADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                       
Sbjct: 1015 WRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADAL 1074

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-------- 321
             RK EHAA+CL A L+ S + G+VR+ +R  L  D AAQ ++ L++ GKTR+        
Sbjct: 1075 SRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLL 1134

Query: 322  --------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 379
                          LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Sbjct: 1135 VTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKT 1194

[Close]

BLAST of Clc04G00160 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.5e-36
Identity = 107/367 (29.16%), Postives = 169/367 (46.05%), Query Frame = 0


Query: 81   EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVL 140
            ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL
Sbjct: 640  KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699

Query: 141  GIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYENRKLNDAERRYATSEKEMLAV 200
               D +K   +ETDASD A+G+VL Q   DD  +P+ Y + K++ A+  Y+ S+KEMLA+
Sbjct: 700  RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759

Query: 201  VHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ-------------- 260
            +  L+ WR YL  +   F I TD+ ++           + + ARWQ              
Sbjct: 760  IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819

Query: 261  --------------------DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQA 320
                                 + SE  ++    Q+   S++   +  + T   NDT    
Sbjct: 820  GSANHIADALSRIVDETEPIPKDSEDNSINFVNQI---SITDDFKNQVVTEYTNDTKLLN 879

Query: 321  LIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA 380
            L+  +E+ +  E                       L R ++K+ H+     H G +    
Sbjct: 880  LLN-NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 939

Query: 381  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHL 382
            ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT L
Sbjct: 940  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 999

[Close]

BLAST of Clc04G00160 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.5e-36
Identity = 107/367 (29.16%), Postives = 169/367 (46.05%), Query Frame = 0


Query: 81   EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVL 140
            ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL
Sbjct: 640  KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699

Query: 141  GIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYENRKLNDAERRYATSEKEMLAV 200
               D +K   +ETDASD A+G+VL Q   DD  +P+ Y + K++ A+  Y+ S+KEMLA+
Sbjct: 700  RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759

Query: 201  VHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ-------------- 260
            +  L+ WR YL  +   F I TD+ ++           + + ARWQ              
Sbjct: 760  IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819

Query: 261  --------------------DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQA 320
                                 + SE  ++    Q+   S++   +  + T   NDT    
Sbjct: 820  GSANHIADALSRIVDETEPIPKDSEDNSINFVNQI---SITDDFKNQVVTEYTNDTKLLN 879

Query: 321  LIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA 380
            L+  +E+ +  E                       L R ++K+ H+     H G +    
Sbjct: 880  LLN-NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 939

Query: 381  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHL 382
            ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT L
Sbjct: 940  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 999

[Close]

BLAST of Clc04G00160 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.5e-36
Identity = 107/367 (29.16%), Postives = 169/367 (46.05%), Query Frame = 0


Query: 81   EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVL 140
            ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL
Sbjct: 640  KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699

Query: 141  GIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYENRKLNDAERRYATSEKEMLAV 200
               D +K   +ETDASD A+G+VL Q   DD  +P+ Y + K++ A+  Y+ S+KEMLA+
Sbjct: 700  RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759

Query: 201  VHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ-------------- 260
            +  L+ WR YL  +   F I TD+ ++           + + ARWQ              
Sbjct: 760  IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819

Query: 261  --------------------DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQA 320
                                 + SE  ++    Q+   S++   +  + T   NDT    
Sbjct: 820  GSANHIADALSRIVDETEPIPKDSEDNSINFVNQI---SITDDFKNQVVTEYTNDTKLLN 879

Query: 321  LIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA 380
            L+  +E+ +  E                       L R ++K+ H+     H G +    
Sbjct: 880  LLN-NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 939

Query: 381  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHL 382
            ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT L
Sbjct: 940  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 999

[Close]

BLAST of Clc04G00160 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.5e-36
Identity = 107/367 (29.16%), Postives = 169/367 (46.05%), Query Frame = 0


Query: 81   EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVL 140
            ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL
Sbjct: 640  KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699

Query: 141  GIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYENRKLNDAERRYATSEKEMLAV 200
               D +K   +ETDASD A+G+VL Q   DD  +P+ Y + K++ A+  Y+ S+KEMLA+
Sbjct: 700  RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759

Query: 201  VHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ-------------- 260
            +  L+ WR YL  +   F I TD+ ++           + + ARWQ              
Sbjct: 760  IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819

Query: 261  --------------------DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQA 320
                                 + SE  ++    Q+   S++   +  + T   NDT    
Sbjct: 820  GSANHIADALSRIVDETEPIPKDSEDNSINFVNQI---SITDDFKNQVVTEYTNDTKLLN 879

Query: 321  LIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA 380
            L+  +E+ +  E                       L R ++K+ H+     H G +    
Sbjct: 880  LLN-NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 939

Query: 381  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHL 382
            ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT L
Sbjct: 940  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 999

[Close]

BLAST of Clc04G00160 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.5e-36
Identity = 107/367 (29.16%), Postives = 169/367 (46.05%), Query Frame = 0


Query: 81   EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVL 140
            ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL
Sbjct: 640  KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699

Query: 141  GIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYENRKLNDAERRYATSEKEMLAV 200
               D +K   +ETDASD A+G+VL Q   DD  +P+ Y + K++ A+  Y+ S+KEMLA+
Sbjct: 700  RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759

Query: 201  VHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ-------------- 260
            +  L+ WR YL  +   F I TD+ ++           + + ARWQ              
Sbjct: 760  IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819

Query: 261  --------------------DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQA 320
                                 + SE  ++    Q+   S++   +  + T   NDT    
Sbjct: 820  GSANHIADALSRIVDETEPIPKDSEDNSINFVNQI---SITDDFKNQVVTEYTNDTKLLN 879

Query: 321  LIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA 380
            L+  +E+ +  E                       L R ++K+ H+     H G +    
Sbjct: 880  LLN-NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 939

Query: 381  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHL 382
            ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT L
Sbjct: 940  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 999

[Close]

BLAST of Clc04G00160 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 2.9e-120
Identity = 216/343 (62.97%), Postives = 253/343 (73.76%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQAAF+ LK+  MEGP+LG
Sbjct: 865  ELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDGLKQALMEGPLLG 924

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            IADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN AERRY  SEKEMLAVVHCLRA
Sbjct: 925  IADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 984

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                       
Sbjct: 985  WRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADAL 1044

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-------- 321
             RK EHAA+CL A L+ S + G+VR+ +R  L  D AAQ ++ L++ GKTR+        
Sbjct: 1045 SRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLL 1104

Query: 322  --------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 379
                          LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Sbjct: 1105 VTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKT 1164

[Close]

BLAST of Clc04G00160 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 2.9e-120
Identity = 223/349 (63.90%), Postives = 255/349 (73.07%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFS++TGPLT LLKK+ +W W  EC AAFE LKK  MEG VLG
Sbjct: 813  ELRSFLGLANYYRRFVEGFSKRTGPLTDLLKKNQKWNWTPECHAAFESLKKAMMEGSVLG 872

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            IADVT+PFEVETDASDFALG VLLQD HPIAYE++KLNDAERRYA SEKEMLAVVHCLRA
Sbjct: 873  IADVTRPFEVETDASDFALGGVLLQDGHPIAYESQKLNDAERRYAASEKEMLAVVHCLRA 932

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLG+KFV+KTDNSS+CHFF Q KLSSKQARWQ+                       
Sbjct: 933  WRQYLLGAKFVVKTDNSSVCHFFNQPKLSSKQARWQEYLAEFDFQFEHKPGRANQAADAL 992

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-------- 321
             RKSE AALC+ A LKAS L+G++REAIR +L ND AAQA+IQL+ EG TR+        
Sbjct: 993  SRKSEXAALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGXTRQFXVENDLX 1052

Query: 322  --------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 381
                          LR+LL+ ECHDT WAGH GWQRTYALLK+GY WPSLRDD+M +TKT
Sbjct: 1053 FTKGNXLYVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPSLRDDVMQYTKT 1112

Query: 382  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSNRYQ 385
            CL+CQQDK E  K+A LLEPL +PSR W+S   +       +G +  YQ
Sbjct: 1113 CLICQQDKVERNKIAXLLEPLPIPSRXWESARTN-------LGENEHYQ 1154

[Close]

BLAST of Clc04G00160 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 8.4e-120
Identity = 215/343 (62.68%), Postives = 252/343 (73.47%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LG
Sbjct: 895  ELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLG 954

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            IADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN AERRY  SEKEMLAVVHCLRA
Sbjct: 955  IADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                       
Sbjct: 1015 WRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADAL 1074

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-------- 321
             RK EHAA+CL A L+ S + G+VR+ +R  L  D AAQ ++ L++ GKTR+        
Sbjct: 1075 SRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLL 1134

Query: 322  --------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 379
                          LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Sbjct: 1135 VTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKT 1194

[Close]

BLAST of Clc04G00160 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 8.4e-120
Identity = 215/343 (62.68%), Postives = 252/343 (73.47%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LG
Sbjct: 895  ELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLG 954

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            IADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN AERRY  SEKEMLAVVHCLRA
Sbjct: 955  IADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                       
Sbjct: 1015 WRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADAL 1074

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-------- 321
             RK EHAA+CL A L+ S + G+VR+ +R  L  D AAQ ++ L++ GKTR+        
Sbjct: 1075 SRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLL 1134

Query: 322  --------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 379
                          LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Sbjct: 1135 VTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKT 1194

[Close]

BLAST of Clc04G00160 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 8.4e-120
Identity = 215/343 (62.68%), Postives = 252/343 (73.47%), Query Frame = 0


Query: 82   KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
            +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LG
Sbjct: 895  ELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLG 954

Query: 142  IADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRA 201
            IADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN AERRY  SEKEMLAVVHCLRA
Sbjct: 955  IADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRA 1014

Query: 202  WRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD----------------------- 261
            WRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                       
Sbjct: 1015 WRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADAL 1074

Query: 262  -RKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-------- 321
             RK EHAA+CL A L+ S + G+VR+ +R  L  D AAQ ++ L++ GKTR+        
Sbjct: 1075 SRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLL 1134

Query: 322  --------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT 379
                          LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Sbjct: 1135 VTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKT 1194

[Close]

BLAST of Clc04G00160 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-08
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 82  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLG 141
           +LR FLGL  YYRRFV+ + +   PLT+LLKK +   W      AF+ LK      PVL 
Sbjct: 65  ELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWTEMAALAFKALKGAVTTLPVLA 124

Query: 142 IADVTKPF 150
           + D+  PF
Sbjct: 125 LPDLKLPF 131

[Close]

BLAST of Clc04G00160 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 47.0 bits (110), Expect = 4.0e-05
Identity = 22/57 (38.60%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 10  WSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLGFIGWIRML 67
           W  I P  C  C    ++++H+FF+C+FA ++W    S    HV PPL F   IR L
Sbjct: 77  WGFIFPPLCLFCNTHDETRQHLFFDCEFAREVWIYFTSRV--HVFPPLLFEDGIRWL 131

[Close]

BLAST of Clc04G00160 vs. TAIR 10
Match: AT1G60720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 46.2 bits (108), Expect = 6.8e-05
Identity = 25/92 (27.17%), Postives = 42/92 (45.65%), Query Frame = 0


Query: 5   QKQCPWSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLG-FIGWI 64
           Q+   W  I    CCLC  +++S+ H+ F+C+FA  +W   FS     + P    F  W 
Sbjct: 156 QRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVWRLAFS----RLCPRQRLFCSWA 215

Query: 65  RMLFDEHPFKASKQFLWEKLRSFLGLANYYRR 96
            +L       +S   L  K+ +   + N +R+
Sbjct: 216 ELLSWMRSSSSSAPSLLRKVSAHAIIYNIWRQ 243

[Close]

BLAST of Clc04G00160 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 42.4 bits (98), Expect = 9.9e-04
Identity = 22/67 (32.84%), Postives = 33/67 (49.25%), Query Frame = 0


Query: 10  WSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLGFIGWIRMLFDE 69
           W    PS C LC    ++++H+FF+C F+ ++W+  F      V PP  F    R L   
Sbjct: 276 WGIQVPSLCLLCNALDETRQHVFFDCPFSHEVWS--FFCSNARVTPPRMFKDSARWL--R 335

Query: 70  HPFKASK 77
           HP +  K
Sbjct: 336 HPCRDKK 338

The following BLAST results are available for this feature:

BLAST of Clc04G00160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537907.1	7.1e-121	61.81	uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]	[more]
TYK07954.1	6.0e-120	62.97	reverse transcriptase [Cucumis melo var. makuwa]	[more]
XP_022155185.1	6.0e-120	63.90	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
KAA0067557.1	1.7e-119	62.68	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	1.7e-119	62.68	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]

BLAST of Clc04G00160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	9.5e-36	29.16	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	9.5e-36	29.16	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	9.5e-36	29.16	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	9.5e-36	29.16	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	9.5e-36	29.16	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Clc04G00160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9P8	2.9e-120	62.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A6J1DLQ6	2.9e-120	63.90	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5D3C4R1	8.4e-120	62.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	8.4e-120	62.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	8.4e-120	62.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

BLAST of Clc04G00160 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.3e-08	44.12	DNA/RNA polymerases superfamily protein	[more]
AT2G02520.1	4.0e-05	38.60	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G60720.1	6.8e-05	27.17	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G45063.1	9.9e-04	32.84	copper ion binding;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 171..191
None	No IPR available	GENE3D	1.10.340.70		coord: 269..343 e-value: 6.2E-15 score: 57.2
None	No IPR available	PANTHER	PTHR24559:SF360	SUBFAMILY NOT NAMED	coord: 82..377
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 82..377
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 150..239 e-value: 3.31286E-42 score: 141.861
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 119..213 e-value: 4.6E-31 score: 106.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 73..157 e-value: 6.3E-20 score: 73.0
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 288..344 e-value: 1.6E-17 score: 63.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 81..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G00160.1	Clc04G00160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity