Clc04G00150 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G00150
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr04: 393941 .. 394711 (-)
RNA-Seq Expression	Clc04G00150
Synteny	Clc04G00150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGAAGAGTATCTCCAACACTTTATTGATGCGAGACAGAAGAATTGGGTTCAAATGTTAGACGTGGCTCAGTTTAGCTTTAACAGACAGAAGAGTCCCGCCATGGGAAAGACACCCTTTGAAATCGTGTGCGGCAGACAACCGCTCATGCCACACGTTGTTGACCATCCCTATGCAGGGAAGAGTCCTCAGGTGCACAATTTCACCAGAGAGTGGAAAGAATCTTCAAAAGTTGTGTGCGCGTGCCTAGAGAGGGCATCGAAGCGTATGAAGAAGTGGGCGGATATGAAATGCAGACCCCTCGAGTTTCAATCAGGAGATAAAGTCCTAATCAAACTGCGCCTCGAACAGTTTCGATTTCACAGAAAGAGAGACCAACGCCTGGTAAGGAAATATGAAGGACCCGTGGAAGTGGTCGAGAAGACCTCGTATTGAGTTCAACTACCCACATGGATGAAGATCCACCCAGTCATCCATGTAAGCAACCTGAAGCCTTACCATCCTAACTTGGACGATGAATGACGTAATACTGTGACTCACCCTCTTGTCACGATGAAGGACACCACGGAGAGGGAAGTCGAAAAGATACTTGCAGAAAGAACCTGCCGCATTGGGAGACCAAGACGAGACCTGAAGGAATTCTTGGTGAAGAGGAAAGGCCTCTCGGACGAAGAAACCAGTTGGGAGCGCGTTGAAGACCTGAAATCTGCTACCTTACGAATTGCTGAGTTCGAGCAGCGTCGGTTGACAGGGACGTCAACCATTTAA

mRNA sequence

ATGCTCGAAGAGTATCTCCAACACTTTATTGATGCGAGACAGAAGAATTGGGTTCAAATGTTAGACGTGGCTCAGTTTAGCTTTAACAGACAGAAGAGTCCCGCCATGGGAAAGACACCCTTTGAAATCGTGTGCGGCAGACAACCGCTCATGCCACACGTTGTTGACCATCCCTATGCAGGGAAGAGTCCTCAGGTGCACAATTTCACCAGAGAGTGGAAAGAATCTTCAAAAGTTGTGTGCGCGTGCCTAGAGAGGGCATCGAAGCGTATGAAGAAGTGGGCGGATATGAAATGCAGACCCCTCGAGTTTCAATCAGGAGATAAAGTCCTAATCAAACTGCGCCTCGAACAGTTTCGATTTCACAGAAAGAGAGACCAACGCCTGGACACCACGGAGAGGGAAGTCGAAAAGATACTTGCAGAAAGAACCTGCCGCATTGGGAGACCAAGACGAGACCTGAAGGAATTCTTGGTGAAGAGGAAAGGCCTCTCGGACGAAGAAACCAGTTGGGAGCGCGTTGAAGACCTGAAATCTGCTACCTTACGAATTGCTGAGTTCGAGCAGCGTCGGTTGACAGGGACGTCAACCATTTAA

Coding sequence (CDS)

ATGCTCGAAGAGTATCTCCAACACTTTATTGATGCGAGACAGAAGAATTGGGTTCAAATGTTAGACGTGGCTCAGTTTAGCTTTAACAGACAGAAGAGTCCCGCCATGGGAAAGACACCCTTTGAAATCGTGTGCGGCAGACAACCGCTCATGCCACACGTTGTTGACCATCCCTATGCAGGGAAGAGTCCTCAGGTGCACAATTTCACCAGAGAGTGGAAAGAATCTTCAAAAGTTGTGTGCGCGTGCCTAGAGAGGGCATCGAAGCGTATGAAGAAGTGGGCGGATATGAAATGCAGACCCCTCGAGTTTCAATCAGGAGATAAAGTCCTAATCAAACTGCGCCTCGAACAGTTTCGATTTCACAGAAAGAGAGACCAACGCCTGGACACCACGGAGAGGGAAGTCGAAAAGATACTTGCAGAAAGAACCTGCCGCATTGGGAGACCAAGACGAGACCTGAAGGAATTCTTGGTGAAGAGGAAAGGCCTCTCGGACGAAGAAACCAGTTGGGAGCGCGTTGAAGACCTGAAATCTGCTACCTTACGAATTGCTGAGTTCGAGCAGCGTCGGTTGACAGGGACGTCAACCATTTAA

Protein sequence

MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYAGKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFRFHRKRDQRLDTTEREVEKILAERTCRIGRPRRDLKEFLVKRKGLSDEETSWERVEDLKSATLRIAEFEQRRLTGTSTI

Homology

[Close]

BLAST of Clc04G00150 vs. NCBI nr
Match: XP_022148918.1 (uncharacterized protein LOC111017468 [Momordica charantia])

HSP 1 Score: 254.6 bits (649), Expect = 7.0e-64
Identity = 134/221 (60.63%), Postives = 155/221 (70.14%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           +LEEYL+HFIDARQKNW+QMLDVAQ  FN QKS   G+TPFEIVCGRQP++PHVVDHPY 
Sbjct: 101 VLEEYLRHFIDARQKNWIQMLDVAQLCFNCQKSTTTGRTPFEIVCGRQPVLPHVVDHPYV 160

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GKSPQ +NFT+EW +S +V  A LE+ASK MKKWAD K RPLEFQ+G +VL+KLR EQ R
Sbjct: 161 GKSPQAYNFTKEWCQSIEVAQAYLEKASKHMKKWADKKRRPLEFQAGYQVLVKLRPEQLR 220

Query: 121 FH-----------------------RKRDQRLDTTEREVEKILAERTCRIGRPRRDLKEF 180
           F                        R      +  ++EVE ILAERT R+  PRRD++EF
Sbjct: 221 FQVIHVSNLKPYHQDTVDPTRNEITRPAIMLTNKVDKEVESILAERTRRVESPRRDIQEF 280

Query: 181 LVKRKGLSDEETSWERVEDLKSATLRIAEFEQRRLTGTSTI 199
           LVK KGL DEE  WE  EDLK+    I EFEQRRLTGTSTI
Sbjct: 281 LVKWKGLPDEEIRWEHTEDLKTTVAAIEEFEQRRLTGTSTI 321

[Close]

BLAST of Clc04G00150 vs. NCBI nr
Match: KAA0064236.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK18606.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 2.0e-58
Identity = 122/210 (58.10%), Postives = 159/210 (75.71%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           MLEEYL+HF++ARQKNWVQ+LDVAQF FN Q S +  ++PFEIV GRQP++PH+VDHP+A
Sbjct: 1   MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQASSSTRRSPFEIVSGRQPILPHLVDHPFA 60

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GK+PQ  NFT+EWK+++ +  A LE+ASKRMKKWAD K RPLEF++GD+VLIKLR EQ R
Sbjct: 61  GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 120

Query: 121 FHRKRDQRL------------DTTEREVEKILAERTCRIGRPRRDLKEFLVKRKGLSDEE 180
           F  +++QRL               ++ VE+ILAER  R  RP R + E+LVK K L  EE
Sbjct: 121 FRGRKNQRLVRKYEGSVEVLKKKEDKYVEEILAERVRRGRRPARRIHEYLVKWKNLPVEE 180

Query: 181 TSWERVEDLKSATLRIAEFEQRRLTGTSTI 199
           TSW+R+EDL++   +I +F+ R+LTGTSTI
Sbjct: 181 TSWKRLEDLEAWKQKIEDFKLRQLTGTSTI 210

[Close]

BLAST of Clc04G00150 vs. NCBI nr
Match: KAA0048702.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 233.4 bits (594), Expect = 1.7e-57
Identity = 123/223 (55.16%), Postives = 157/223 (70.40%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           MLEEYL HF++ARQ NWVQ+LDVAQF F  Q S ++G++PFEIV GRQP++PH+VDHPY 
Sbjct: 66  MLEEYLCHFVNARQNNWVQLLDVAQFCFKTQTSSSIGRSPFEIVSGRQPVLPHLVDHPYI 125

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GK+PQV NFT+EWK+++ +  A LE+ASKRMKKWAD K RPLEFQ+GD++LIKLR EQ R
Sbjct: 126 GKNPQVLNFTKEWKQTNNIARAYLEKASKRMKKWADKKRRPLEFQAGDQLLIKLRPEQVR 185

Query: 121 FHRKRDQRL-------------------------DTTEREVEKILAERTCRIGRPRRDLK 180
           F  ++DQRL                            +++VE+IL ER  R  RP R + 
Sbjct: 186 FRGRKDQRLIKKYEGPVKVLKKRNIITRPIIDLSQKEDKDVEEILVERERRCRRPIRRIH 245

Query: 181 EFLVKRKGLSDEETSWERVEDLKSATLRIAEFEQRRLTGTSTI 199
           E+LVK K L  EETSWERVEDL++   +I +F+ R+LTG STI
Sbjct: 246 EYLVKWKNLLVEETSWERVEDLEAWKQKIEDFKLRQLTGMSTI 288

[Close]

BLAST of Clc04G00150 vs. NCBI nr
Match: KAA0067594.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 6.3e-57
Identity = 122/227 (53.74%), Postives = 158/227 (69.60%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           MLEEYL+HF++ARQKNWVQ+LDVAQF FN Q S ++G++PFEIV GRQP++PH+VDHP+A
Sbjct: 714 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFA 773

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GK+PQ  NFT+EWK+++ +  A LE+ASKRMKKWAD K RPLEF++GD+VLIKLR EQ R
Sbjct: 774 GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 833

Query: 121 FHRKRDQRL---------------------------------DTTEREVEKILAERTCRI 180
           F  ++DQRL                                    +++VE+ILAER  R 
Sbjct: 834 FRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHKEDKDVEEILAERVRRG 893

Query: 181 GRPRRDLKEFLVKRKGLSDEETSWERVEDLKSATLRIAEFEQRRLTG 195
            RP R + E+LVK K L  EETSWERVEDL++   +I +F+ R+LTG
Sbjct: 894 RRPARRIHEYLVKWKNLHVEETSWERVEDLEAWKQKIEDFKLRQLTG 940

[Close]

BLAST of Clc04G00150 vs. NCBI nr
Match: TYJ97166.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 6.3e-57
Identity = 122/227 (53.74%), Postives = 158/227 (69.60%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           MLEEYL+HF++ARQKNWVQ+LDVAQF FN Q S ++G++PFEIV GRQP++PH+VDHP+A
Sbjct: 103 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFA 162

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GK+PQ  NFT+EWK+++ +  A LE+ASKRMKKWAD K RPLEF++GD+VLIKLR EQ R
Sbjct: 163 GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 222

Query: 121 FHRKRDQRL---------------------------------DTTEREVEKILAERTCRI 180
           F  ++DQRL                                    +++VE+ILAER  R 
Sbjct: 223 FRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHKEDKDVEEILAERVRRG 282

Query: 181 GRPRRDLKEFLVKRKGLSDEETSWERVEDLKSATLRIAEFEQRRLTG 195
            RP R + E+LVK K L  EETSWERVEDL++   +I +F+ R+LTG
Sbjct: 283 RRPARRIHEYLVKWKNLHVEETSWERVEDLEAWKQKIEDFKLRQLTG 329

[Close]

BLAST of Clc04G00150 vs. ExPASy TrEMBL
Match: A0A6J1D5E5 (uncharacterized protein LOC111017468 OS=Momordica charantia OX=3673 GN=LOC111017468 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.4e-64
Identity = 134/221 (60.63%), Postives = 155/221 (70.14%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           +LEEYL+HFIDARQKNW+QMLDVAQ  FN QKS   G+TPFEIVCGRQP++PHVVDHPY 
Sbjct: 101 VLEEYLRHFIDARQKNWIQMLDVAQLCFNCQKSTTTGRTPFEIVCGRQPVLPHVVDHPYV 160

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GKSPQ +NFT+EW +S +V  A LE+ASK MKKWAD K RPLEFQ+G +VL+KLR EQ R
Sbjct: 161 GKSPQAYNFTKEWCQSIEVAQAYLEKASKHMKKWADKKRRPLEFQAGYQVLVKLRPEQLR 220

Query: 121 FH-----------------------RKRDQRLDTTEREVEKILAERTCRIGRPRRDLKEF 180
           F                        R      +  ++EVE ILAERT R+  PRRD++EF
Sbjct: 221 FQVIHVSNLKPYHQDTVDPTRNEITRPAIMLTNKVDKEVESILAERTRRVESPRRDIQEF 280

Query: 181 LVKRKGLSDEETSWERVEDLKSATLRIAEFEQRRLTGTSTI 199
           LVK KGL DEE  WE  EDLK+    I EFEQRRLTGTSTI
Sbjct: 281 LVKWKGLPDEEIRWEHTEDLKTTVAAIEEFEQRRLTGTSTI 321

[Close]

BLAST of Clc04G00150 vs. ExPASy TrEMBL
Match: A0A5D3D4Z3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001370 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 9.6e-59
Identity = 122/210 (58.10%), Postives = 159/210 (75.71%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           MLEEYL+HF++ARQKNWVQ+LDVAQF FN Q S +  ++PFEIV GRQP++PH+VDHP+A
Sbjct: 1   MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQASSSTRRSPFEIVSGRQPILPHLVDHPFA 60

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GK+PQ  NFT+EWK+++ +  A LE+ASKRMKKWAD K RPLEF++GD+VLIKLR EQ R
Sbjct: 61  GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 120

Query: 121 FHRKRDQRL------------DTTEREVEKILAERTCRIGRPRRDLKEFLVKRKGLSDEE 180
           F  +++QRL               ++ VE+ILAER  R  RP R + E+LVK K L  EE
Sbjct: 121 FRGRKNQRLVRKYEGSVEVLKKKEDKYVEEILAERVRRGRRPARRIHEYLVKWKNLPVEE 180

Query: 181 TSWERVEDLKSATLRIAEFEQRRLTGTSTI 199
           TSW+R+EDL++   +I +F+ R+LTGTSTI
Sbjct: 181 TSWKRLEDLEAWKQKIEDFKLRQLTGTSTI 210

[Close]

BLAST of Clc04G00150 vs. ExPASy TrEMBL
Match: A0A5A7TYR2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00240 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 8.1e-58
Identity = 123/223 (55.16%), Postives = 157/223 (70.40%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           MLEEYL HF++ARQ NWVQ+LDVAQF F  Q S ++G++PFEIV GRQP++PH+VDHPY 
Sbjct: 66  MLEEYLCHFVNARQNNWVQLLDVAQFCFKTQTSSSIGRSPFEIVSGRQPVLPHLVDHPYI 125

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GK+PQV NFT+EWK+++ +  A LE+ASKRMKKWAD K RPLEFQ+GD++LIKLR EQ R
Sbjct: 126 GKNPQVLNFTKEWKQTNNIARAYLEKASKRMKKWADKKRRPLEFQAGDQLLIKLRPEQVR 185

Query: 121 FHRKRDQRL-------------------------DTTEREVEKILAERTCRIGRPRRDLK 180
           F  ++DQRL                            +++VE+IL ER  R  RP R + 
Sbjct: 186 FRGRKDQRLIKKYEGPVKVLKKRNIITRPIIDLSQKEDKDVEEILVERERRCRRPIRRIH 245

Query: 181 EFLVKRKGLSDEETSWERVEDLKSATLRIAEFEQRRLTGTSTI 199
           E+LVK K L  EETSWERVEDL++   +I +F+ R+LTG STI
Sbjct: 246 EYLVKWKNLLVEETSWERVEDLEAWKQKIEDFKLRQLTGMSTI 288

[Close]

BLAST of Clc04G00150 vs. ExPASy TrEMBL
Match: A0A5A7VJQ9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00600 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.1e-57
Identity = 122/227 (53.74%), Postives = 158/227 (69.60%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           MLEEYL+HF++ARQKNWVQ+LDVAQF FN Q S ++G++PFEIV GRQP++PH+VDHP+A
Sbjct: 714 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFA 773

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GK+PQ  NFT+EWK+++ +  A LE+ASKRMKKWAD K RPLEF++GD+VLIKLR EQ R
Sbjct: 774 GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 833

Query: 121 FHRKRDQRL---------------------------------DTTEREVEKILAERTCRI 180
           F  ++DQRL                                    +++VE+ILAER  R 
Sbjct: 834 FRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHKEDKDVEEILAERVRRG 893

Query: 181 GRPRRDLKEFLVKRKGLSDEETSWERVEDLKSATLRIAEFEQRRLTG 195
            RP R + E+LVK K L  EETSWERVEDL++   +I +F+ R+LTG
Sbjct: 894 RRPARRIHEYLVKWKNLHVEETSWERVEDLEAWKQKIEDFKLRQLTG 940

[Close]

BLAST of Clc04G00150 vs. ExPASy TrEMBL
Match: A0A5D3BDU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00440 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.1e-57
Identity = 122/227 (53.74%), Postives = 158/227 (69.60%), Query Frame = 0


Query: 1   MLEEYLQHFIDARQKNWVQMLDVAQFSFNRQKSPAMGKTPFEIVCGRQPLMPHVVDHPYA 60
           MLEEYL+HF++ARQKNWVQ+LDVAQF FN Q S ++G++PFEIV GRQP++PH+VDHP+A
Sbjct: 103 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFA 162

Query: 61  GKSPQVHNFTREWKESSKVVCACLERASKRMKKWADMKCRPLEFQSGDKVLIKLRLEQFR 120
           GK+PQ  NFT+EWK+++ +  A LE+ASKRMKKWAD K RPLEF++GD+VLIKLR EQ R
Sbjct: 163 GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 222

Query: 121 FHRKRDQRL---------------------------------DTTEREVEKILAERTCRI 180
           F  ++DQRL                                    +++VE+ILAER  R 
Sbjct: 223 FRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHKEDKDVEEILAERVRRG 282

Query: 181 GRPRRDLKEFLVKRKGLSDEETSWERVEDLKSATLRIAEFEQRRLTG 195
            RP R + E+LVK K L  EETSWERVEDL++   +I +F+ R+LTG
Sbjct: 283 RRPARRIHEYLVKWKNLHVEETSWERVEDLEAWKQKIEDFKLRQLTG 329

The following BLAST results are available for this feature:

BLAST of Clc04G00150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148918.1	7.0e-64	60.63	uncharacterized protein LOC111017468 [Momordica charantia]	[more]
KAA0064236.1	2.0e-58	58.10	reverse transcriptase [Cucumis melo var. makuwa] >TYK18606.1 reverse transcripta...	[more]
KAA0048702.1	1.7e-57	55.16	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067594.1	6.3e-57	53.74	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYJ97166.1	6.3e-57	53.74	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Clc04G00150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G00150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5E5	3.4e-64	60.63	uncharacterized protein LOC111017468 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5D3D4Z3	9.6e-59	58.10	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7TYR2	8.1e-58	55.16	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7VJQ9	3.1e-57	53.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]
A0A5D3BDU8	3.1e-57	53.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17...	[more]

BLAST of Clc04G00150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 133..192 e-value: 1.2E-5 score: 34.7
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 134..198 score: 12.213601
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 135..190 e-value: 4.7E-9 score: 36.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..83 e-value: 3.1E-7 score: 31.9
None	No IPR available	GENE3D	2.40.50.40		coord: 129..196 e-value: 1.5E-11 score: 45.8
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..140
None	No IPR available	PANTHER	PTHR46148:SF35	ZINC FINGER, CCHC-TYPE-RELATED	coord: 1..140
None	No IPR available	CDD	cd00024	CD_CSD	coord: 135..189 e-value: 1.9945E-8 score: 46.7013
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 126..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G00150.1	Clc04G00150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0003676	nucleic acid binding