Clc04G00140 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G00140
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionexosome complex component RRP43
LocationClcChr04: 379879 .. 385855 (-)
RNA-Seq ExpressionClc04G00140
SyntenyClc04G00140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGCCCCAGAGTCGACCATGGTGCTCTTGACCGATCTTTGGTTGACCGATCTTTGGTTCTTCAGTTTGGTGGCAACTTTGGAGGGTTTTTTTTTTTTTTTTCAGCGCTGTTGGTTGGCTATGGTGCTTTGCTCCTGTCCTCTTTGTGTAGCTCCTCTTTCCTCTTTGATGTAATGGCATGAACTAGGCTCAGTCCTTTGTTTCAGTTCATTGGGAAAATTCACGACTGTCATGATTTACGCTGGAAATATTATACAGGCATATGCATAATCCGTATGGAGTAGCCCAATTGGAATCTTTATTTAACTCCATTGGTTTTGTATGAACCTATTTTATCCTCCCTTCAGTAATTTTCTTTGGTTAATCAAACAAAAGAAAAAACTTGAACTCGCAAGTCGTAATGCTGGAAAATGTTATCTTCTGTGGATCCTATGTTTATGAAACATGCCAATGATCAATCGTTATTATTATTTGAAAAATCTAATAATTGCTCTTTGAAAGCTGGAAAATGTTAATATGAGATTTCTTTTCTATCTTGTTTGTTAACTTGGTAGGTTGAACTACTTTAAAACGATTAGTACCTTTTTTCTCTGTTGAGCCATATTTAAACTTCTTCCTGGTTTATATTTTTAGTGCAAATCCCTGTTGTTGCCTTAAATGATGATGGAAAAGTAGTATTTGTCTCTGAGGAAGAAGGGGGAGAAAATTTTGAGAAGGAACCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACATGCCTACTCCACAAGAAGTACATCTTGGCTGATCCTACTGCAGAGGAGGAGTCCGTGATGGAAACTATTGTGACCGTGGTTTTGGATTCATCTGCTCAACTGGTGTCCTTCTACAAACCGGGTGGATCTGTTCTCGCTTATACATCATCTGTTCAGGTTGGTCTCTCCTTTCTCTGGCAACTTTATTGATGGAAATTTCTCAAGAGAATGGATTAGTTCCCTGGATTTTGTCACTGTTCACATTTTCCCTCTCTGTTAAGTTTGGTAAAGCTAGTTGGATTTTCAATATGGTGTTGAATTGTAACAATGGTTTAGGGCATCGTCTGGTAATTATTTGGTTTTTGAAAATTAAGCTTAGTCCGTATCAATTTCTTACAATGGTTTTTGTCTTTCTTAAGTAAAAGAGTTGAATTCTTAGCCAAGTTCTAAAAACAAAAATAAGTTTGAGTAGTTTCTAAAACTTGGTTTGGTTTTTGAAGACATTAGTAGAAAGTAGATAACAAAGCAAGAAATTTAGAGTTAAAAGAGGTATTAGGCTTAATATTCAAAAACTAAAAAACAAAAACTCAATGGTTATCGAAGAGGACCTTTTTAAGTGTTTAATTTTTTAAAAGTGTGGTAGAAGATTCTAAAAGTGTTTGAGACCACCTCCTAATTTGTACTTATTAGTTTACTCAACAAATAAACTCAAAACTAATGAATTGACTTTATGGTTATATTGTTATTATCATAATCTTCAATTTTCAAAGTAACGCCCTTTTTTTTTTTTTTTTTTTTGGGGTGTGTTTAATACCATCCATGCCTATAAAGTGCTCTTTTCCTTATTTTGCTTTTGGGATCCACCTTCCTTCCTTTTATAAACTAATATTTGGACTAGGGTAGGGATGTGTTTGGGAGTAATTTTGACATGAGACTTTTATCAAGCTTTTGGTCATTCAACTTTTTTCGTTATTATTTTTATGTGAAAATCATGTTAAAAGTGTAAAATCAAACATTAATTAGATTTTGAAGGATTAAAGTCATGTTTGAGAGATTTTGAACATGAAAAAAGTCATTTTACCTATTTCAAAATCTCTCTAACATGCTTTATCTAACGAGCATACCATAGTTGTGATTTACTTGTCAATGTTGCAAGGAGCAAATTACGATTTAAACGGGCAAGTGAATGCATGCTCTAATCTTTGTGCGGATGGCGTGGTTGTAGGATTGTGTTGCATTGACCAGACAAAGATCAAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGTATGGACATTGACTAAGTTTTGGGTCTATCTCTTCTACCTGTTTTAATTCGATGAATTGAATGGTGGATGGTTTATAGGCTTCCAATTTTACTTGTTTGGTTGCCTCCAGAATTTTGGTGGTGATATTTGTTTACCCTGGAGATTGTTTTTGTTAGAATTTGGTCTCAGGAATCAATTTTTGTGCAGGGCTCTGATTTCTATGGCCAAATATCTCTTTATTATTAATTGAAGTTAATTTCTCACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTTCTTTTTCTTAAATAACATGAATCTAACTTATTTAGTGCATGCGGATGTTTTGGCTCTGCATTGGTTAATAGTAGTTTATATTTGGATAATAGTATAATATGAGTAAAAAGAAATCAGATTTATCAATCAATCTTGTGATTATAGTTTCCCATCGATAAAGTATATTCCTCTTCTCCAAGGACTGATAATGAGAAGTAGCAACATTGGGAAAGGAATGTTAGTTTGTACACGGGTTGTGTACGTATATTCTTTATGTTCTCAGTTCTCTTCTCCTTAAACAAATCATAATGTTGGAAAAATAAATATAGGTTACCGAAGAGGGTTTGGTGAACTATATATTCGATTTTGTGTATTATATATTCCAACATCATTTTTTATCTCTGTATATGTTAAATGTATATTAATATATTAAAATTTCCCAACATAAAGAATTGTGAGATACTTGTTTGAACCAAAATATATATGCAATGAGGGTACCTAACTGTCTATATGGACAAATTTGTTTGTAAATATCTATTGAATACAAAATTAAAATTAATGGTTTGTTGAACCACATATATTATTTTATATTATTATGTTTGTAAATGGACTGTTTACATAAGCATGTATTTGATATTTGACTATGTTTCGCATTATCATTGTGGGTCTGTGTGTATATATACTTACATATATAGGTGGCAGATTAGTCATTGTATAAACTATATAAAAGTAGGCATCTTTTGGTGTGAAGTTGGTTATATATAGACAGATAAATGATACATATAAATACACTGGAAAAGATCAAGATAAGCGTTGAAGTCAAAGAATGTTGAGTTCTTCAAGTAGACAAAGGACTACAAAAACCAAAAAATGTACCAATTGAAATTCCACATTATGTTGTCCAATCATTTCAAGCATCTAATCTACATCATTATTCCTCTCGTTCAAATGTCTGACGTATGCGAACATTGGTGCTAATGGAATGAATGTATATTAGATGATACAAGGTATATTTAATATTTAACTAATTGACAATATAAATAGGTCATATGGTAAAATGAACAAAATGTTGTATATTGCCTATATATGTTTGTATATCCTTGAACCTTACATGTATATGCAAATATATTCATATATCCTTAGAACAAGTGATACATGGTATATTTGAATTATCCTAACATATGTTCTGAAAATAAATATGTATGAATTTGTACAAGTATACCTTGTTATATGAAATAACAATCTTTAGTGTTAATTCTTTAAAAAAGAAATTCATTTTCATTAAAACACTTATGATAAGAACAATTTAAAATAAAAATACTAATAGCTTTCAATATTTTGAGTAGCTTCTAAACATTTGTATTTCTTTAAAAATGACTTGTTTTTTTTTAAATTAAACACTTGATGTATTCCAAACACCCCCTAAATATACAATGAATATTCTCATATTAAATCATAACTTAATAAGTAGTGTCTAGACAACGTAAAAGTTGGATAAAAGGCTAGATCTAAATTTATTCATGAAAAGAATAGCATGCTGTGTAATGATTAAAATCAAGAAAACCTATTTGACAATGTTTAAATTAGGTTTGTAAAATAGTCTTTCTAGCTAAATATTCCTTTTATTTTAGCATATAGGTCCAACTTTAAAAAGAAGGCAAGGAATGTTGTGATAGGCAAATGGTTAGAGCCATTTCGACTAGTAGTTCAATTAGTCAAATCATAATTTCTTTGAGATTTTTCTTTTTCAAAATAAAAACTATAATTGATATCCAAAAAGGGACTTAATGTTGATTTATTTTTAAGAAACCAAAACCAATTAAATGGACCAAATAGATCAAGATCGATTGAAATAATTTGCTTCTCAGACAGGGCTAATCAATTGTTTGGTTTCTTCCATTATAATTGCTTCCTCTGCTTCCATTTCCAATGGTAAAATGATAAACCATCACAATCCACATTAGTCTCTACTCGATAACAAATGCGTATTAATCGTATCTTTTTCTAGGCATGTACTAAGAGTATATATGACAATGAATGCTAAGTTATGCTTATATTGACTATCATTATGCTTTTATTTTACATACAATTATTATGGATTACATAAATGATGATGGTGATTGGTGGACTATATTCAAAATTATTATTGATTAAGCTAAATATAAATAGACTATAATGTTATGTTAATAATGATTGGAAATGTTGATACCATGTGGACATCAAATATTGAGTCTACCCTTGATGTTAGCAAAATGACCCAAAAAGGAATCGGAAAAAATAAAGTTAGATTTGAATGAGATTACGTGCATATCAGTTGGGAGCTATTCAAATTGCAAAATCAATGTGTTGCCTCTTCATGGTTGGGAGTGATTTTAAATTGTCAAAATTATTTTTGTCATTTTTAAAATCACTCAAACACACATTTTTAATCATCTAAAATAATTTGGTTTTCAATTTTACACTCTTATGCAATTTTCATATCAACAAAATTAGTTTTGATTAAAAACATGTTTTATGGTGATTTTGAAAATGACAAAAATGATTTCGGCCATTTTAAATCACTCCCAAACATGTATGAAGACGATTTTGTGCCACTTCTTCATTTTCTCCAAACATTACTTTGAGAAAAATTGTAGTACAACACATTGTCTATACTATCTCCATTCATTGCTTTCTGTAGTAGAATCATTTAAGAAAAATGTGGGTGTAGGAGAAAAAATTTCGACCAATTACAAAATCTAGGGATGACAACAGGGCCGAGCCAAGGCGGGTGGGGGGTCCCCTCCCCGCCCCCGATGGGGGAATTTCCCCCCATCCCCGCCCTCATCCCACCTAAGATAGGTGGGGACGAGGGTGGGGATTCTTCGTCAGGGAGACGGGTCGTCGCTGGGGCCCCATTCCTCACGAGAACTGAGAGAGAGCGAGAGTGCGAGATTGAGAGAGAGAGAGCGAGAGCGAGATGGCAGTCATCTTTACAATTTATATATATATATATATATATATATATATCGGGAATGGGGTCGGGGATTAAATGCCCCTGCCCCGGCCCCGCAAATTTTTTTTGCCATCCCTAGTCACGTCATCATGAACGAAGTCAATTATATCAAATTTTAGGCCAATTTAAGATTGTTGTATCCCTAAATTAAAGCTTGCACACAAGCAAATGGCTAATTTAAAAAATGACACGTGTCTTCAATTTGACCATTGGATCATGATATCAAGCTTATCAACTTCAACGGTGATTAAACCTGGTCTGCGATCAATGAAATTGGCCAAAGTTTTGTTTGGACTTTAAATCATAAATGAGATCGAGCCGAGTAATTAAAAATTCTCGGGTCCAAAATTTGACCCATTTGAAGCCTGTGGTGGAAAATTTGAGCAAAAAAAATAAAATAAAATAAAATTAAAAAATAAAAAATAAGATTGAGCCTAAGTTTAACTTTAGCCCATACCCAAAGATACAATTAGGGCATAGCATTGCGACATTGCACGATAGATCTGCTTCTTGTCTCCCTATCTCAACACCTGACTGTCAGCAAAGCTCTGTGATTAAACACGGATGCTCGAAGACTCCAGTGGTGGCGCAGCGTCCGCTACGTAGGATAGAGTCACGAATGACCTTACCAATGTCAACAGACCGGCCTATGCTAAAATAG

mRNA sequence

ATGAGTGGCCCCAGAGTCGACCATGGTGCTCTTGACCGATCTTTGGTTGACCGATCTTTGGTTCTTCAGTTTGGTGGCAACTTTGGAGGGCTCAGTCCTTTGTTTCAGTTCATTGGGAAAATTCACGACTGTCATGATTTACGCTGGAAATATTATACAGGCATATGCATAATCCTGCAAATCCCTGTTGTTGCCTTAAATGATGATGGAAAAGTAGTATTTGTCTCTGAGGAAGAAGGGGGAGAAAATTTTGAGAAGGAACCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACATGCCTACTCCACAAGAAGTACATCTTGGCTGATCCTACTGCAGAGGAGGAGTCCGTGATGGAAACTATTGTGACCGTGGTTTTGGATTCATCTGCTCAACTGGTGTCCTTCTACAAACCGGGTGGATCTGTTCTCGCTTATACATCATCTGTTCAGGATTGTGTTGCATTGACCAGACAAAGATCAAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGGCCGAGCCAAGGCGGGTGGGGGGTCCCCTCCCCGCCCCCGATGGGGGAATTTCCCCCCATCCCCGCCCTCATCCCACCTAAGATAGGTGGGGACGAGGGTGGGGATTCTTCGTCAGGGAGACGGGTCGTCGCTGGGGCCCCATTCCTCACGAGAACTGAGAGAGAGCGAGAATCTGCTTCTTGTCTCCCTATCTCAACACCTGACTGTCAGCAAAGCTCTGTGATTAAACACGGATGCTCGAAGACTCCAGTGGTGGCGCAGCGTCCGCTACGTAGGATAGAGTCACGAATGACCTTACCAATGTCAACAGACCGGCCTATGCTAAAATAG

Coding sequence (CDS)

ATGAGTGGCCCCAGAGTCGACCATGGTGCTCTTGACCGATCTTTGGTTGACCGATCTTTGGTTCTTCAGTTTGGTGGCAACTTTGGAGGGCTCAGTCCTTTGTTTCAGTTCATTGGGAAAATTCACGACTGTCATGATTTACGCTGGAAATATTATACAGGCATATGCATAATCCTGCAAATCCCTGTTGTTGCCTTAAATGATGATGGAAAAGTAGTATTTGTCTCTGAGGAAGAAGGGGGAGAAAATTTTGAGAAGGAACCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACATGCCTACTCCACAAGAAGTACATCTTGGCTGATCCTACTGCAGAGGAGGAGTCCGTGATGGAAACTATTGTGACCGTGGTTTTGGATTCATCTGCTCAACTGGTGTCCTTCTACAAACCGGGTGGATCTGTTCTCGCTTATACATCATCTGTTCAGGATTGTGTTGCATTGACCAGACAAAGATCAAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGGCCGAGCCAAGGCGGGTGGGGGGTCCCCTCCCCGCCCCCGATGGGGGAATTTCCCCCCATCCCCGCCCTCATCCCACCTAAGATAGGTGGGGACGAGGGTGGGGATTCTTCGTCAGGGAGACGGGTCGTCGCTGGGGCCCCATTCCTCACGAGAACTGAGAGAGAGCGAGAATCTGCTTCTTGTCTCCCTATCTCAACACCTGACTGTCAGCAAAGCTCTGTGATTAAACACGGATGCTCGAAGACTCCAGTGGTGGCGCAGCGTCCGCTACGTAGGATAGAGTCACGAATGACCTTACCAATGTCAACAGACCGGCCTATGCTAAAATAG

Protein sequence

MSGPRVDHGALDRSLVDRSLVLQFGGNFGGLSPLFQFIGKIHDCHDLRWKYYTGICIILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDEAISGPSQGGWGVPSPPPMGEFPPIPALIPPKIGGDEGGDSSSGRRVVAGAPFLTRTERERESASCLPISTPDCQQSSVIKHGCSKTPVVAQRPLRRIESRMTLPMSTDRPMLK
Homology
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BLAST of Clc04G00140 vs. NCBI nr
Match: TYK02492.1 (exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 232.3 bits (591), Expect = 5.5e-57
Identity = 118/125 (94.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 57  IILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILA 116
           +ILQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILA
Sbjct: 31  MILQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILA 90

Query: 117 DPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILD 176
           DPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDC+ALTRQRSKELQ+ILD
Sbjct: 91  DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 150

Query: 177 EAISG 182
           EAISG
Sbjct: 151 EAISG 155

[Close]
BLAST of Clc04G00140 vs. NCBI nr
Match: XP_038877146.1 (exosome complex component RRP43 isoform X2 [Benincasa hispida])

HSP 1 Score: 231.5 bits (589), Expect = 9.3e-57
Identity = 118/123 (95.93%), Postives = 122/123 (99.19%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADP 118
           L+IPVVALNDDGKV+FVSEEEGGENFEKEPVNKE+RKLKLNSIPFSLTCLLHKKYILADP
Sbjct: 178 LRIPVVALNDDGKVIFVSEEEGGENFEKEPVNKERRKLKLNSIPFSLTCLLHKKYILADP 237

Query: 119 TAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDEA 178
           TAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDCVALTRQRSKELQMILDEA
Sbjct: 238 TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEA 297

Query: 179 ISG 182
           ISG
Sbjct: 298 ISG 300

[Close]
BLAST of Clc04G00140 vs. NCBI nr
Match: XP_008460772.1 (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-56
Identity = 117/123 (95.12%), Postives = 122/123 (99.19%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADP 118
           LQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADP
Sbjct: 190 LQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADP 249

Query: 119 TAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDEA 178
           TAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDC+ALTRQRSKELQ+ILDEA
Sbjct: 250 TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEA 309

Query: 179 ISG 182
           ISG
Sbjct: 310 ISG 312

[Close]
BLAST of Clc04G00140 vs. NCBI nr
Match: XP_008460773.1 (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_008460774.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-56
Identity = 117/123 (95.12%), Postives = 122/123 (99.19%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADP 118
           LQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADP
Sbjct: 178 LQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADP 237

Query: 119 TAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDEA 178
           TAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDC+ALTRQRSKELQ+ILDEA
Sbjct: 238 TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEA 297

Query: 179 ISG 182
           ISG
Sbjct: 298 ISG 300

[Close]
BLAST of Clc04G00140 vs. NCBI nr
Match: XP_004149399.1 (exosome complex component RRP43 isoform X1 [Cucumis sativus] >XP_031739665.1 exosome complex component RRP43 isoform X1 [Cucumis sativus] >KAE8649355.1 hypothetical protein Csa_019145 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 6.0e-56
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADP 118
           LQIPVVALNDDGKVVFV EEEGGENFEKEPVNKE RKLKLNSIPFSLTCLLHKKYILADP
Sbjct: 178 LQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADP 237

Query: 119 TAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDEA 178
           TAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDC+ALTRQRSKELQ+ILDEA
Sbjct: 238 TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEA 297

Query: 179 ISG 182
           ISG
Sbjct: 298 ISG 300

[Close]
BLAST of Clc04G00140 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.7e-06
Identity = 34/122 (27.87%), Postives = 63/122 (51.64%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILAD 118
           +Q+P V +N++  +  V+              K+K  L + + P + +  +     ++ D
Sbjct: 163 VQLPEVTINEETALAEVN-------------LKKKSYLNIRTHPVATSFAVFDDTLLIVD 222

Query: 119 PTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDE 178
           PT EEE +    +T+V+D   +L   +KPGGS L   + +QDC++    R KE++ ++DE
Sbjct: 223 PTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDE 270

Query: 179 AI 180
            I
Sbjct: 283 VI 270

[Close]
BLAST of Clc04G00140 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-05
Identity = 34/120 (28.33%), Postives = 62/120 (51.67%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILAD 118
           +Q+P V +N++  +  V+              K+K  L + + P + +  +     ++ D
Sbjct: 163 VQLPEVTINEETALAEVN-------------LKKKSCLNIRTHPVATSFAVFDDTLLIVD 222

Query: 119 PTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDE 178
           PT EEE +    +TVV+D   +L   +KPGGS L   + +QDC++    R KE++ ++DE
Sbjct: 223 PTEEEEHLATGTLTVVMDEEGRLCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDE 268

[Close]
BLAST of Clc04G00140 vs. ExPASy TrEMBL
Match: A0A5D3BUK6 (Exosome complex component RRP43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00160 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.6e-57
Identity = 118/125 (94.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 57  IILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILA 116
           +ILQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILA
Sbjct: 31  MILQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILA 90

Query: 117 DPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILD 176
           DPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDC+ALTRQRSKELQ+ILD
Sbjct: 91  DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 150

Query: 177 EAISG 182
           EAISG
Sbjct: 151 EAISG 155

[Close]
BLAST of Clc04G00140 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 5.9e-57
Identity = 117/123 (95.12%), Postives = 122/123 (99.19%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADP 118
           LQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADP
Sbjct: 178 LQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADP 237

Query: 119 TAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDEA 178
           TAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDC+ALTRQRSKELQ+ILDEA
Sbjct: 238 TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEA 297

Query: 179 ISG 182
           ISG
Sbjct: 298 ISG 300

[Close]
BLAST of Clc04G00140 vs. ExPASy TrEMBL
Match: A0A1S3CD66 (exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 5.9e-57
Identity = 117/123 (95.12%), Postives = 122/123 (99.19%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADP 118
           LQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADP
Sbjct: 190 LQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADP 249

Query: 119 TAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDEA 178
           TAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDC+ALTRQRSKELQ+ILDEA
Sbjct: 250 TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEA 309

Query: 179 ISG 182
           ISG
Sbjct: 310 ISG 312

[Close]
BLAST of Clc04G00140 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 8.5e-56
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADP 118
           LQIPVVALNDDGKVVFVSEE+GGENFEKE VNKEKRKLKLNS+PFSLTCLLHK YILADP
Sbjct: 178 LQIPVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADP 237

Query: 119 TAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDEA 178
           TAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDCVALTRQRSKELQMILDEA
Sbjct: 238 TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEA 297

Query: 179 ISG 182
           ISG
Sbjct: 298 ISG 300

[Close]
BLAST of Clc04G00140 vs. ExPASy TrEMBL
Match: A0A0A0KYC2 (RNase_PH_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G165890 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 8.5e-56
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0 

Query: 57  IILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILA 116
           I +QIPVVALNDDGKVVFV EEEGGENFEKEPVNKE RKLKLNSIPFSLTCLLHKKYILA
Sbjct: 4   INVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILA 63

Query: 117 DPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILD 176
           DPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQDC+ALTRQRSKELQ+ILD
Sbjct: 64  DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 123

Query: 177 EAISG 182
           EAISG
Sbjct: 124 EAISG 128

[Close]
BLAST of Clc04G00140 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 158.3 bits (399), Expect = 9.3e-39
Identity = 80/122 (65.57%), Postives = 101/122 (82.79%), Query Frame = 0 

Query: 59  LQIPVVALNDDGKVVFVSEEEGGEN---FEKEPVNKEKRKLKLNSIPFSLTCLLHKKYIL 118
           LQIP+VALND+G++V V+ E+  +N    EKE VNKEKRKL L +IPFSLTC+LHK YIL
Sbjct: 177 LQIPIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYIL 236

Query: 119 ADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMIL 178
           ADPT EEES+M+T+VTVVLDSS Q+VSFYK GG+ LAY+S+++ CV L R+R+KEL+ IL
Sbjct: 237 ADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQIL 296

The following BLAST results are available for this feature:
BLAST of Clc04G00140 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK02492.15.5e-5794.40exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa][more]
XP_038877146.19.3e-5795.93exosome complex component RRP43 isoform X2 [Benincasa hispida][more]
XP_008460772.11.2e-5695.12PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo][more]
XP_008460773.11.2e-5695.12PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_0084607... [more]
XP_004149399.16.0e-5695.12exosome complex component RRP43 isoform X1 [Cucumis sativus] >XP_031739665.1 exo... [more]
BLAST of Clc04G00140 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q96B262.7e-0627.87Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1[more]
Q2KHU31.3e-0528.33Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1[more]
BLAST of Clc04G00140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BUK62.6e-5794.40Exosome complex component RRP43 isoform X1 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3CEE15.9e-5795.12exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995... [more]
A0A1S3CD665.9e-5795.12exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034995... [more]
A0A6J1HVL58.5e-5695.12exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4... [more]
A0A0A0KYC28.5e-5693.60RNase_PH_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G165890 ... [more]
BLAST of Clc04G00140 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G60080.19.3e-3965.573'-5'-exoribonuclease family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 57..181
e-value: 8.1E-21
score: 76.6
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 59..180
NoneNo IPR availablePANTHERPTHR11097:SF28SUBFAMILY NOT NAMEDcoord: 59..180
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 96..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G00140.1Clc04G00140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane