Clc03G19480 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G19480
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr03: 31686672 .. 31686983 (+)
RNA-Seq Expression	Clc03G19480
Synteny	Clc03G19480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGGAACAGGGCGAAGAAATCTCATTCATCTTCATTTTCCTTCTTGGGGGCTCTGTTCAAATCAAAAAGATCAGGTAGAAGAGGAGATCATTACTATGAGCAGCAGCAGCAGCAACAGGGCAGCAGCTGGGACGACTTCTCATGCCCTACCAAGGTGTGGCCCAGCGACGCCGATAAATGCCACCGTTGGGTGGCTGAGCCCGGCATCGATCGAAAGGCCAAAGATTACATTGACAGGATCCACCGTAACCGTGTTTTCGAAACCCAACGCCAAACCGTCACCCTTCCTCCTGATTCCAACTGCTAA

mRNA sequence

ATGGGAGGGAACAGGGCGAAGAAATCTCATTCATCTTCATTTTCCTTCTTGGGGGCTCTGTTCAAATCAAAAAGATCAGGTAGAAGAGGAGATCATTACTATGAGCAGCAGCAGCAGCAACAGGGCAGCAGCTGGGACGACTTCTCATGCCCTACCAAGGTGTGGCCCAGCGACGCCGATAAATGCCACCGTTGGGTGGCTGAGCCCGGCATCGATCGAAAGGCCAAAGATTACATTGACAGGATCCACCGTAACCGTGTTTTCGAAACCCAACGCCAAACCGTCACCCTTCCTCCTGATTCCAACTGCTAA

Coding sequence (CDS)

ATGGGAGGGAACAGGGCGAAGAAATCTCATTCATCTTCATTTTCCTTCTTGGGGGCTCTGTTCAAATCAAAAAGATCAGGTAGAAGAGGAGATCATTACTATGAGCAGCAGCAGCAGCAACAGGGCAGCAGCTGGGACGACTTCTCATGCCCTACCAAGGTGTGGCCCAGCGACGCCGATAAATGCCACCGTTGGGTGGCTGAGCCCGGCATCGATCGAAAGGCCAAAGATTACATTGACAGGATCCACCGTAACCGTGTTTTCGAAACCCAACGCCAAACCGTCACCCTTCCTCCTGATTCCAACTGCTAA

Protein sequence

MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPDSNC

Homology

[Close]

BLAST of Clc03G19480 vs. NCBI nr
Match: KGN65989.1 (hypothetical protein Csa_006868 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDAD 60
           MGGNR KKSH+SSFSFLG LFKSKRS R+GDHYY+   QQQG+SW+DFSCP+KVWPSDAD
Sbjct: 1   MGGNRQKKSHNSSFSFLG-LFKSKRSVRKGDHYYD--HQQQGNSWEDFSCPSKVWPSDAD 60

Query: 61  KCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPDS 102
           KCHRWVAEPGIDRKAKDYIDRIHRNRVFET RQTVTLPP+S
Sbjct: 61  KCHRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPES 98

[Close]

BLAST of Clc03G19480 vs. NCBI nr
Match: KAG6588556.1 (hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 9.4e-28
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDAD 60
           MGGN+ KKSH SSFSF G  FKSKR+ R+G+HY            D+ SCP KVWPSDAD
Sbjct: 1   MGGNKHKKSH-SSFSFFG-FFKSKRA-RKGEHY----------EHDELSCPRKVWPSDAD 60

Query: 61  KCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPP 100
           KCHRWVAEPGIDRKAKDYIDRIHRNRV ET+RQTVT+ P
Sbjct: 61  KCHRWVAEPGIDRKAKDYIDRIHRNRVLETERQTVTVAP 86

[Close]

BLAST of Clc03G19480 vs. NCBI nr
Match: KAG6590516.1 (hypothetical protein SDJN03_15939, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-24
Identity = 68/99 (68.69%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 1   MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDAD 60
           MGGNR KK+ SSSFSFL A FKSKRS R+GD Y        GS+WDD S P+KVWPSDAD
Sbjct: 1   MGGNRHKKA-SSSFSFL-AFFKSKRS-RKGDGY------DHGSTWDDLSYPSKVWPSDAD 60

Query: 61  KCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPP 100
           K H WVAEPGIDRKA DYI RIH +RV ET+ QTVT+ P
Sbjct: 61  KHHHWVAEPGIDRKADDYIKRIHLSRVLETKNQTVTVAP 90

[Close]

BLAST of Clc03G19480 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 8.2e-24
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 1   MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSW-DDFSCPTKVWPSDA 60
           MGGNR KKSHSS   F  + FKSKR GR+GDHY        G +W D+     KVWPSD 
Sbjct: 1   MGGNRQKKSHSSFSIF--SFFKSKR-GRKGDHY------DHGGAWPDEMPRSNKVWPSDE 60

Query: 61  DKCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPD 101
           DK H W+AEPGIDRKAKDYIDRI+RNRVFE++RQTVT+ P+
Sbjct: 61  DKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Clc03G19480 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_005148 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-22
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDAD 60
           MGG+  +K   SSFS   + FKSKR GR+GD Y      + G++W+D    +KVWPSD D
Sbjct: 1   MGGSHRQKKTHSSFSIF-SFFKSKR-GRKGDVY------EHGTNWEDVPSSSKVWPSDED 60

Query: 61  KCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPD 101
           K +RWVAEPGIDRKAKDYIDRI++NRVFET+RQTVT+ P+
Sbjct: 61  KGYRWVAEPGIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

[Close]

BLAST of Clc03G19480 vs. ExPASy TrEMBL
Match: A0A0A0LY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560730 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.5e-42
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDAD 60
           MGGNR KKSH+SSFSFLG LFKSKRS R+GDHYY+   QQQG+SW+DFSCP+KVWPSDAD
Sbjct: 1   MGGNRQKKSHNSSFSFLG-LFKSKRSVRKGDHYYD--HQQQGNSWEDFSCPSKVWPSDAD 60

Query: 61  KCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPDS 102
           KCHRWVAEPGIDRKAKDYIDRIHRNRVFET RQTVTLPP+S
Sbjct: 61  KCHRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPES 98

[Close]

BLAST of Clc03G19480 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.0e-24
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 1   MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSW-DDFSCPTKVWPSDA 60
           MGGNR KKSHSS   F  + FKSKR GR+GDHY        G +W D+     KVWPSD 
Sbjct: 1   MGGNRQKKSHSSFSIF--SFFKSKR-GRKGDHY------DHGGAWPDEMPRSNKVWPSDE 60

Query: 61  DKCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPD 101
           DK H W+AEPGIDRKAKDYIDRI+RNRVFE++RQTVT+ P+
Sbjct: 61  DKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Clc03G19480 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.8e-24
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 1   MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSW-DDFSCPTKVWPSDA 60
           MGGNR KKSHSS   F  + FKS+R GR+GDHY        G +W D+     KVWPSD 
Sbjct: 1   MGGNRQKKSHSSFSIF--SFFKSRR-GRKGDHY------DHGGAWLDEMPRSNKVWPSDE 60

Query: 61  DKCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPD 101
           DK H WVAEPGIDRKAKDYIDRI+RNRVFE++RQTVT+ P+
Sbjct: 61  DKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Clc03G19480 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDAD 60
           MGG+  +K   SSFS   + FKSKR GR+GD Y      + G++W+D    +KVWPSD D
Sbjct: 1   MGGSHRQKKTHSSFSIF-SFFKSKR-GRKGDVY------EHGTNWEDVPSSSKVWPSDED 60

Query: 61  KCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPD 101
           K +RWVAEPGIDRKAKDYIDRI++NRVFET+RQTVT+ P+
Sbjct: 61  KGYRWVAEPGIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

[Close]

BLAST of Clc03G19480 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 66/99 (66.67%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 1  MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSW-DDFSCPTKVWPSDA 60
          MGG++ KKSH SSFSF   L KSK S R+GDHY        G SW D+ S   KVWPSD 
Sbjct: 1  MGGHKHKKSH-SSFSFFSFL-KSKWS-RKGDHY------DHGGSWLDEKSRSGKVWPSDE 60

Query: 61 DKCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLP 99
          DK H WVAEPGIDRKAKDYIDRI+RNRVFE++RQTVT+P
Sbjct: 61 DKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIP 90

[Close]

BLAST of Clc03G19480 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-11
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 1  MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDAD 60
          MGG    +SHSS    L + FK++RS R           +   SWDDF    K   SD D
Sbjct: 1  MGGK--NRSHSSKRFSLFSFFKTRRSHR----------VEADGSWDDFGYTRKAMASDED 60

Query: 61 KCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVT 97
          K + WVAEPGIDRKA  +I + H  RV E++RQT++
Sbjct: 61 KRY-WVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Clc03G19480 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 28  RRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRV 87
           RR  H+    + +  +SWDD     K W SD DK + WVAEPGIDRKA  +I + H +RV
Sbjct: 4   RRSSHH----RVEADASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRV 63

Query: 88  FETQRQTVTLPP 100
            E++RQ  TLPP
Sbjct: 64  SESERQ--TLPP 68

[Close]

BLAST of Clc03G19480 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein )

HSP 1 Score: 40.8 bits (94), Expect = 7.7e-04
Identity = 26/91 (28.57%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 1  MGGNRAKKSHSSSFSFLGALFKSKRSGRRGDHYYEQQQQQQGSSWDDFSCPTKVWPSDAD 60
          MGG+  ++  SSSFS + +LF   R  +  D++ E++           +   ++  +D D
Sbjct: 3  MGGHGRRRKSSSSFSVVKSLF--ARCSKEKDNWNEERM---------INVRPRIMTTDDD 62

Query: 61 KCHRWVAEPGIDRKAKDYIDRIHRNRVFETQ 92
           C   +AEP IDR+A  +I + H   + +T+
Sbjct: 63 GCSWTIAEPCIDRRATAFIAKFHETPIQDTE 82

The following BLAST results are available for this feature:

BLAST of Clc03G19480 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65989.1	1.1e-41	86.14	hypothetical protein Csa_006868 [Cucumis sativus]	[more]
KAG6588556.1	9.4e-28	70.71	hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6590516.1	4.8e-24	68.69	hypothetical protein SDJN03_15939, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45870.1	8.2e-24	63.37	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KGN45873.1	3.4e-22	60.00	hypothetical protein Csa_005148 [Cucumis sativus]	[more]

BLAST of Clc03G19480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G19480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY99	5.5e-42	86.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560730 PE=4 SV=1	[more]
A0A0A0K7Y2	4.0e-24	63.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	6.8e-24	63.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0	1.7e-22	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K8V3	1.7e-22	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of Clc03G19480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	2.9e-11	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	1.4e-10	48.61	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G48325.1	7.7e-04	28.57	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..49
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..96
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G19480.1	Clc03G19480.1	mRNA