Clc03G19360 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G19360
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	C3H1-type domain-containing protein
Location	ClcChr03: 31587898 .. 31589195 (-)
RNA-Seq Expression	Clc03G19360
Synteny	Clc03G19360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCAGTTTGCAAGTACTTTTATCACAAAAGTTATGATAATCTATGCTCTCAGGTAATCATTTGATTTTGCTTTTTTGATTTTTTGTTTTTGAAAATTAATTTTATAAATACCACTTTATCTATTAGTTTATATGATTTGTTGTCTAAAAATTAGAGTATTTTCAAAATCAAAGTCAAATTAAAAAAATAATAATAATAAATTTTTTTATAAAAAAAAACTCAAAAACTTATTTTTGGCTGAGAATTAAAATGTTTAAAGAGAAAAATATAAAAACTAGAAATTGTGAGAAAGAAAAGAAAAACATGAGGCAGCAGAAGATTGTAGGAGAAATTGATTATTAAGAAACCTTTGGAACAAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCGGGGCTTTTGTAATCGGTTCCTCACTACGGTAATTCTTCTCTTCCCTTTGCATCGCATCACATCGCATCGCTTCGCTTCCATTTTCTTTTAACCTAATTTTTGCTTCTCCTTCGCCTTCTTTTCAAAGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACACACAACTCCACTTCTCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAACTTGAACTGAACTCGTTGCTGCGTATTTTGATGCTTGAAACCATCGGACAGCTTTATGTGTTCCACACTTCATTTGTTTATTATTTACCAACAGCACTGCATTTTTTCATTCATAGGAACAATCGACCTATTCCCATCTCCATTCCTCTTTCATTGACCCATTTTGAACAGGACCTTTGATCTTTTACGTAGTGCTTGTTATATGAATCTGCAAATCATTCTGAGTTATGAACAGCACCCATCATTGTTTACGAACCAACCTATAAATCATTCTGAGTTCTACATATTATTTGAATCATTTAGTTTTAAGGTTTCTGTCGCTTACATTTGATAATCTTTACCTTCAGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAA

mRNA sequence

ATGGGTGCAGTTTGCAAGTACTTTTATCACAAAAGTTATGATAATCTATGCTCTCAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCGGGGCTTTTGTAATCGGTTCCTCACTACGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACACACAACTCCACTTCTCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAA

Coding sequence (CDS)

ATGGGTGCAGTTTGCAAGTACTTTTATCACAAAAGTTATGATAATCTATGCTCTCAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCGGGGCTTTTGTAATCGGTTCCTCACTACGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACACACAACTCCACTTCTCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAA

Protein sequence

MGAVCKYFYHKSYDNLCSQKKKKKKKKMPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFHFRRGFCNRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG

Homology

[Close]

BLAST of Clc03G19360 vs. NCBI nr
Match: XP_038879279.1 (zinc finger CCCH domain-containing protein 3 [Benincasa hispida])

HSP 1 Score: 294.3 bits (752), Expect = 7.2e-76
Identity = 140/156 (89.74%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFH-FRRGFCNR 87
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF  P    FH FR GFCNR
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDPNQPLFHAFRPGFCNR 60

Query: 88  FLTTGFCQYGDSCKYFHPN---NNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTG 147
           FLTTGFCQYGDSCKYFHPN   NNN THNSTSHPIA  PENNQPPN PVN FADGSSFTG
Sbjct: 61  FLTTGFCQYGDSCKYFHPNNNYNNNNTHNSTSHPIAGFPENNQPPNFPVNQFADGSSFTG 120

Query: 148 SLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           SLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 SLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 156

[Close]

BLAST of Clc03G19360 vs. NCBI nr
Match: XP_008450521.1 (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA0050958.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa] >TYK10305.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-67
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 87
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 88  NRFLTTGFCQYGDSCKYFHP--NNNNTTHNSTSHPIANIPENNQPPNIPVNPFADG-SSF 147
           NRFL+TGFCQYGDSCKYFHP  N+N+ THNS+SHPIA  PENNQPPN+P N F DG SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 148 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           TGSLVSD +G TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLG-TSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of Clc03G19360 vs. NCBI nr
Match: XP_004135569.1 (zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypothetical protein Csa_007019 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-66
Identity = 127/157 (80.89%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS---FNQPFSDSFHFRRGFC 87
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDS   FNQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 88  NRFLTTGFCQYGDSCKYFHPNNNN-TTHNSTSHPIANIPENNQPPNIPVNPFADG-SSFT 147
           NRFL+TGFCQYGDSCKYFHPNNNN  T+NS+S+P+A  PEN QPPN+PVN F DG SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 148 GSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           GSL+SD +G TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLG-TSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of Clc03G19360 vs. NCBI nr
Match: XP_022989487.1 (zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_022989488.1 zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 245.0 bits (624), Expect = 5.0e-61
Identity = 124/155 (80.00%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 87
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQPFSD+F  R   C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTR--VC 60

Query: 88  NRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 147
           NRFLTTGFCQYGDSCKYFH  NN     S+S PIA  PENNQ PN+PVN F +GSS TGS
Sbjct: 61  NRFLTTGFCQYGDSCKYFHSKNN--LQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGS 120

Query: 148 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           L  D + RTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 L--DRL-RTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of Clc03G19360 vs. NCBI nr
Match: XP_022931617.1 (zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618.1 zinc finger CCCH domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 242.3 bits (617), Expect = 3.3e-60
Identity = 123/155 (79.35%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 87
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSH KAKALWFDSF   NQP S +F  R   C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTR--LC 60

Query: 88  NRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 147
           NRFLTTGFCQYGDSC YFH NNN     S+SHPIA  PENNQ PNIPVN F +GSS TGS
Sbjct: 61  NRFLTTGFCQYGDSCNYFHSNNN--PQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGS 120

Query: 148 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           L  D + RTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 L--DRL-RTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of Clc03G19360 vs. ExPASy Swiss-Prot
Match: Q0JP11 (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 4.7e-38
Identity = 86/174 (49.43%), Postives = 102/174 (58.62%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS----------------FNQ 87
           MPLGKYYCDYCEKQFQDTP ARKRHL    H +A+ALW+D+                 +Q
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60

Query: 88  PFSDSFHFRRGFCNRFLTTGFCQYGDSCKYFHP-----NNNNTTHNSTSHPIANIPE-NN 147
           P + +     G C  F+ TG C++GDSC+YFHP     N         S P+A       
Sbjct: 61  PGAAAI----GVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQG 120

Query: 148 QPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
             PN      ADGSSF+G+++    G TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 121 SQPNFVGYQAADGSSFSGNILG---GHTSWGNLPPSLRPPPEGGYPPFPFVDWG 167

[Close]

BLAST of Clc03G19360 vs. ExPASy Swiss-Prot
Match: Q2TA39 (Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 52/169 (30.77%), Postives = 76/169 (44.97%), Query Frame = 0


Query: 32  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRRGFCNRFL 91
           +Y+CDYC++ FQD    RK+HL  L H KAK LW+D F    +   D  + R   C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 92  TTGFCQYGDSCKYFHPNNNNTTHNSTS-----------HPIANIPE-------NNQPPNI 151
            TG C +G +C++ H +  +    S               +A +PE         +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRL 123

Query: 152 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
              P +       ++    +G      LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

[Close]

BLAST of Clc03G19360 vs. ExPASy Swiss-Prot
Match: Q9CQR5 (Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 51/169 (30.18%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 32  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRRGFCNRFL 91
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F    +   D  + R   C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 92  TTGFCQYGDSCKYFHPNNNNTTHNST---------SHPI--ANIPENN-------QPPNI 151
            TG C +G +C++ H +  +    S            P+  A +PE +       +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRL 123

Query: 152 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
              P +       ++    +G      LPPSL  PP GG+  L  V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

[Close]

BLAST of Clc03G19360 vs. ExPASy Swiss-Prot
Match: Q6AXL8 (Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-11
Identity = 51/186 (27.42%), Postives = 76/186 (40.86%), Query Frame = 0


Query: 32  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFHFR-RGFCNRFLTT 91
           +YYCDYC++ FQD    RK+HL  + H +AK  WFD+F    +     R +  C +F+ T
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63

Query: 92  GFCQYGDSCKYFH----------------------PNNNNTTHNS--------------- 151
           G C +G SC++ H                      P+ + ++  S               
Sbjct: 64  GQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLAAL 123

Query: 152 TSHPIANIPENNQPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPL 180
           TS  +  + E     NI + P+                  S  +LPPSL PPP GG+   
Sbjct: 124 TSGRVLRMEEEECTENIEIPPYL----------------LSIPDLPPSLHPPPAGGWRVT 173

[Close]

BLAST of Clc03G19360 vs. ExPASy Swiss-Prot
Match: Q9UDW3 (Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-11
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 32  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRRGFCNRFL 91
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F    +   D  + R   C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 92  TTGFCQYGDSCKYFH 104
            TG C +G +C++ H
Sbjct: 64  LTGQCDFGSNCRFSH 76

[Close]

BLAST of Clc03G19360 vs. ExPASy TrEMBL
Match: A0A5D3CFN3 (Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004580 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.0e-68
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 87
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 88  NRFLTTGFCQYGDSCKYFHP--NNNNTTHNSTSHPIANIPENNQPPNIPVNPFADG-SSF 147
           NRFL+TGFCQYGDSCKYFHP  N+N+ THNS+SHPIA  PENNQPPN+P N F DG SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 148 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           TGSLVSD +G TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLG-TSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of Clc03G19360 vs. ExPASy TrEMBL
Match: A0A1S3BQ25 (zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103492103 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.0e-68
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 87
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 88  NRFLTTGFCQYGDSCKYFHP--NNNNTTHNSTSHPIANIPENNQPPNIPVNPFADG-SSF 147
           NRFL+TGFCQYGDSCKYFHP  N+N+ THNS+SHPIA  PENNQPPN+P N F DG SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 148 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           TGSLVSD +G TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLG-TSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of Clc03G19360 vs. ExPASy TrEMBL
Match: A0A0A0M1B0 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 127/157 (80.89%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS---FNQPFSDSFHFRRGFC 87
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDS   FNQ F  SFHFR   C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 88  NRFLTTGFCQYGDSCKYFHPNNNN-TTHNSTSHPIANIPENNQPPNIPVNPFADG-SSFT 147
           NRFL+TGFCQYGDSCKYFHPNNNN  T+NS+S+P+A  PEN QPPN+PVN F DG SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 148 GSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           GSL+SD +G TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLG-TSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of Clc03G19360 vs. ExPASy TrEMBL
Match: A0A6J1JFY8 (zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486532 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.4e-61
Identity = 124/155 (80.00%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 87
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQPFSD+F  R   C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTR--VC 60

Query: 88  NRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 147
           NRFLTTGFCQYGDSCKYFH  NN     S+S PIA  PENNQ PN+PVN F +GSS TGS
Sbjct: 61  NRFLTTGFCQYGDSCKYFHSKNN--LQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGS 120

Query: 148 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           L  D + RTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 L--DRL-RTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of Clc03G19360 vs. ExPASy TrEMBL
Match: A0A6J1EU59 (zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111437782 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.6e-60
Identity = 123/155 (79.35%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRRGFC 87
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSH KAKALWFDSF   NQP S +F  R   C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTR--LC 60

Query: 88  NRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 147
           NRFLTTGFCQYGDSC YFH NNN     S+SHPIA  PENNQ PNIPVN F +GSS TGS
Sbjct: 61  NRFLTTGFCQYGDSCNYFHSNNN--PQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGS 120

Query: 148 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           L  D + RTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 L--DRL-RTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of Clc03G19360 vs. TAIR 10
Match: AT5G26749.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-37
Identity = 79/155 (50.97%), Postives = 96/155 (61.94%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSD---SFHFRRGFC 87
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S +    +   S    +G C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 88  NRFLTTGFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 147
           NRF+T+ FC +GDSC+YFHPNNN  +   T++    +   NQ           GS+    
Sbjct: 61  NRFITSNFCPFGDSCRYFHPNNNTGSTGFTNNTQLRVDMLNQ-------QHIQGSTLNRD 120

Query: 148 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            VS   G T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 FVSGRPG-TGWFDLPPSLKPPPEQGYPQLPFIDWG 147

[Close]

BLAST of Clc03G19360 vs. TAIR 10
Match: AT5G26749.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-33
Identity = 79/174 (45.40%), Postives = 96/174 (55.17%), Query Frame = 0


Query: 28  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSD---SFHFRRGFC 87
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S +    +   S    +G C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 88  NRFLTT-------------------GFCQYGDSCKYFHPNNNNTTHNSTSHPIANIPENN 147
           NRF+T+                    FC +GDSC+YFHPNNN  +   T++    +   N
Sbjct: 61  NRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGSTGFTNNTQLRVDMLN 120

Query: 148 QPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           Q           GS+     VS   G T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 Q-------QHIQGSTLNRDFVSGRPG-TGWFDLPPSLKPPPEQGYPQLPFIDWG 166

The following BLAST results are available for this feature:

BLAST of Clc03G19360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879279.1	7.2e-76	89.74	zinc finger CCCH domain-containing protein 3 [Benincasa hispida]	[more]
XP_008450521.1	1.2e-67	82.28	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA00509...	[more]
XP_004135569.1	2.3e-66	80.89	zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypot...	[more]
XP_022989487.1	5.0e-61	80.00	zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_0...	[more]
XP_022931617.1	3.3e-60	79.35	zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618....	[more]

BLAST of Clc03G19360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JP11	4.7e-38	49.43	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=...	[more]
Q2TA39	2.8e-14	30.77	Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1	[more]
Q9CQR5	1.2e-12	30.18	Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1	[more]
Q6AXL8	4.9e-11	27.42	Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1	[more]
Q9UDW3	6.5e-11	41.33	Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1	[more]

BLAST of Clc03G19360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFN3	6.0e-68	82.28	Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BQ25	6.0e-68	82.28	zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0M1B0	1.1e-66	80.89	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 P...	[more]
A0A6J1JFY8	2.4e-61	80.00	zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1EU59	1.6e-60	79.35	zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Clc03G19360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26749.1	5.4e-37	50.97	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G26749.2	1.6e-33	45.40	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 30..65 e-value: 1.2E-4 score: 31.4
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 80..105 e-value: 0.008 score: 25.4
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 84..104 e-value: 4.1E-6 score: 26.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 79..106 score: 12.980995
IPR013085	U1-C, C2H2-type zinc finger	PFAM	PF06220	zf-U1	coord: 32..63 e-value: 5.0E-9 score: 35.8
None	No IPR available	GENE3D	4.10.1000.10		coord: 76..132 e-value: 1.1E-5 score: 27.3
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 30..75 e-value: 2.4E-8 score: 35.9
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 28..179
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 31..73
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 77..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G19360.1	Clc03G19360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding