Clc03G19190 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G19190
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein of unknown function (DUF3511)
Location	ClcChr03: 31423379 .. 31423666 (-)
RNA-Seq Expression	Clc03G19190
Synteny	Clc03G19190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACGTTGCGACGCCACTCGGGAGCAGCCAGTTGCCGGAGCTCCACCGGGGTTGGGACCATGGAAACAATTAAAGAAATTAGATCTCGGAAGGAACGAGTGGTCGAGGCAACGAAATCGTCGAAGAAATCGATGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGGCGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAAGTGAAGAATTCCATTAAGGAAGGCTTCAAATGGATGAAGAAAAAATGTTCTAAAATCATCTCTGGATTTTAA

mRNA sequence

ATGGAGACGTTGCGACGCCACTCGGGAGCAGCCAGTTGCCGGAGCTCCACCGGGGTTGGGACCATGGAAACAATTAAAGAAATTAGATCTCGGAAGGAACGAGTGGTCGAGGCAACGAAATCGTCGAAGAAATCGATGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGGCGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAAGTGAAGAATTCCATTAAGGAAGGCTTCAAATGGATGAAGAAAAAATGTTCTAAAATCATCTCTGGATTTTAA

Coding sequence (CDS)

ATGGAGACGTTGCGACGCCACTCGGGAGCAGCCAGTTGCCGGAGCTCCACCGGGGTTGGGACCATGGAAACAATTAAAGAAATTAGATCTCGGAAGGAACGAGTGGTCGAGGCAACGAAATCGTCGAAGAAATCGATGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGGCGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAAGTGAAGAATTCCATTAAGGAAGGCTTCAAATGGATGAAGAAAAAATGTTCTAAAATCATCTCTGGATTTTAA

Protein sequence

METLRRHSGAASCRSSTGVGTMETIKEIRSRKERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISGF

Homology

[Close]

BLAST of Clc03G19190 vs. NCBI nr
Match: KAG6588594.1 (hypothetical protein SDJN03_17159, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020542.1 hypothetical protein SDJN02_17228, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 1  METLRRHSGAASC--RSSTGVGTMETIKEIRSRKERVVEATKSSKKSMEKWWNDPENKRK 60
          ME  RR S AA+   RSS  VG+METIKE RS K+RVVEA    KKS+EKWW   E KRK
Sbjct: 1  MEAGRRRSAAAAAGGRSSGFVGSMETIKERRSGKQRVVEA----KKSVEKWWKGSETKRK 60

Query: 61 RRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISGF 96
          RRVAKYKFYAV+ K+K SI +GF+W+KK+C+KII GF
Sbjct: 61 RRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 93

[Close]

BLAST of Clc03G19190 vs. NCBI nr
Match: KAG6588612.1 (hypothetical protein SDJN03_17177, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-20
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 5  RRHSGAASCRSSTGVGTMETIKEIRSRKERVVEATKSSKKSMEKWWNDPENKRKRRVAKY 64
          RR + AA  RSS  VG+METIKE RS K+RVVEA    KKS+EKWW   E KRKRRVAKY
Sbjct: 6  RRSAAAAGGRSSGFVGSMETIKERRSGKQRVVEA----KKSVEKWWKGSETKRKRRVAKY 65

Query: 65 KFYAVDAKVKNSIKEGFKWMKKKCSKIISGF 96
          KFYAV+ K+K SI +GF+W+KK+C+KII GF
Sbjct: 66 KFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 92

[Close]

BLAST of Clc03G19190 vs. NCBI nr
Match: KAA0050944.1 (hypothetical protein E6C27_scaffold761G00710 [Cucumis melo var. makuwa] >TYK10291.1 hypothetical protein E5676_scaffold16G004420 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 8.4e-15
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  METLRRHSGAASCRSSTGVGTMETIKEIRSRKERVVEATKSSKKSMEKWWNDPE-NKRK- 60
          ME  +R SGA S +    +GT+ETIKE+RSR+ERVVE TK  K+S++KWWN+ E NKRK 
Sbjct: 1  MEAAQRWSGATSGQRPRRMGTLETIKEVRSRRERVVETTKMWKESVKKWWNNGEMNKRKG 60

Query: 61 RRVAKYKFYAVD-AKVKNSIKEGFKWMK-KKCSKIISGF 96
           RVAKYKFY ++ +K+K SI  GFKWMK  K    +S F
Sbjct: 61 GRVAKYKFYCLNSSKLKVSINNGFKWMKINKSDNSVSSF 99

[Close]

BLAST of Clc03G19190 vs. NCBI nr
Match: KAG7031408.1 (hypothetical protein SDJN02_05448, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 36/64 (56.25%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 32  KERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKI 91
           K ++++ ++SSK+S   WW +P+ KR+RRVAKY+FY V+ KVK+SIK+G KW+K KCS+I
Sbjct: 49  KRQIIKTSESSKRSTRSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRI 108

Query: 92  ISGF 96
           I GF
Sbjct: 109 IFGF 112

[Close]

BLAST of Clc03G19190 vs. NCBI nr
Match: XP_022151002.1 (uncharacterized protein LOC111019023 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-12
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 30  SRKERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCS 89
           ++++ + + ++SSK S++ WW +PE KR+RRVAKYK Y V+ KVKNSIK+G KW K +CS
Sbjct: 45  TKRQAIKKPSESSKSSVKSWWKNPEMKRRRRVAKYKLYTVEGKVKNSIKKGIKWFKTRCS 104

Query: 90  KIISGF 96
           +I+SGF
Sbjct: 105 RIMSGF 110

[Close]

BLAST of Clc03G19190 vs. ExPASy TrEMBL
Match: A0A5D3CEU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004420 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  METLRRHSGAASCRSSTGVGTMETIKEIRSRKERVVEATKSSKKSMEKWWNDPE-NKRK- 60
          ME  +R SGA S +    +GT+ETIKE+RSR+ERVVE TK  K+S++KWWN+ E NKRK 
Sbjct: 1  MEAAQRWSGATSGQRPRRMGTLETIKEVRSRRERVVETTKMWKESVKKWWNNGEMNKRKG 60

Query: 61 RRVAKYKFYAVD-AKVKNSIKEGFKWMK-KKCSKIISGF 96
           RVAKYKFY ++ +K+K SI  GFKWMK  K    +S F
Sbjct: 61 GRVAKYKFYCLNSSKLKVSINNGFKWMKINKSDNSVSSF 99

[Close]

BLAST of Clc03G19190 vs. ExPASy TrEMBL
Match: A0A7J7D0P0 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G01113 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 32  KERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKI 91
           KER ++  KSS    + WWNDPE KRK+RV KYK YAV+ KVK+SIK G++W+K+KCSK+
Sbjct: 52  KERNIKTHKSS--DTKSWWNDPEMKRKKRVVKYKLYAVEGKVKSSIKNGYRWLKRKCSKM 111

Query: 92  ISGF 96
           + GF
Sbjct: 112 VHGF 113

[Close]

BLAST of Clc03G19190 vs. ExPASy TrEMBL
Match: A0A6J1DCB3 (uncharacterized protein LOC111019023 OS=Momordica charantia OX=3673 GN=LOC111019023 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 30  SRKERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCS 89
           ++++ + + ++SSK S++ WW +PE KR+RRVAKYK Y V+ KVKNSIK+G KW K +CS
Sbjct: 45  TKRQAIKKPSESSKSSVKSWWKNPEMKRRRRVAKYKLYTVEGKVKNSIKKGIKWFKTRCS 104

Query: 90  KIISGF 96
           +I+SGF
Sbjct: 105 RIMSGF 110

[Close]

BLAST of Clc03G19190 vs. ExPASy TrEMBL
Match: A0A2P5D158 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_106230 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 35/62 (56.45%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 32  KERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKI 91
           K+RV++A KS+ +S++ WWNDPE KR+RR++KYK Y+ +A VK S K+G +W++KKCS I
Sbjct: 48  KKRVLKAPKSATQSLKWWWNDPEMKRQRRISKYKLYSAEANVKRSFKKGLRWLRKKCSMI 107

Query: 92  IS 94
           IS
Sbjct: 108 IS 109

[Close]

BLAST of Clc03G19190 vs. ExPASy TrEMBL
Match: A0A2P5EVE2 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_146600 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 35/62 (56.45%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 32  KERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKI 91
           K+RV++A KS+ +S++ WWNDPE KR+RR++KYK Y+ +A VK S K+G +W++KKCS I
Sbjct: 48  KKRVLKAPKSATQSLKWWWNDPEMKRQRRISKYKLYSAEANVKRSFKKGLRWLRKKCSMI 107

Query: 92  IS 94
           IS
Sbjct: 108 IS 109

[Close]

BLAST of Clc03G19190 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 30  SRKERVVEATKSSKKS--MEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKK 89
           S K+  V   +SS  S   + WWNDPE KRKRRVAKYK Y+ + K+K ++++ +KW+K +
Sbjct: 57  SYKDMPVRPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQ 116

Query: 90  CSKIISG 95
           CSKII G
Sbjct: 117 CSKIIHG 123

[Close]

BLAST of Clc03G19190 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-08
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 51  NDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISGF 96
           +D E KRK+R+A+YK Y V+ KVK+++K GF+W+K KC +I+  F
Sbjct: 66  SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of Clc03G19190 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-07
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 52  DPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISG 95
           D E KRK+R+A YK YA++ KVK+++K+GF W+K + S II G
Sbjct: 68  DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of Clc03G19190 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 50.8 bits (120), Expect = 6.9e-07
Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 30  SRKERVVEATKSSKKSMEKWW--NDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKK 89
           +R+  + +  K    +  K W   DPE +RK+RVA YK Y V+ KVK S +  F+W+K++
Sbjct: 37  TRENNIYDVKKEKSIARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQR 96

Query: 90  CSKIISGF 96
            ++++ G+
Sbjct: 97  YTQVVYGW 104

[Close]

BLAST of Clc03G19190 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-06
Identity = 22/56 (39.29%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 40  KSSKKSMEKWWN--DPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIIS 94
           K  + S    W   DP+ +RK+RV  Y+ Y V+ K+K S ++ FKW+K KC+K+++
Sbjct: 61  KKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

The following BLAST results are available for this feature:

BLAST of Clc03G19190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588594.1	1.0e-20	64.95	hypothetical protein SDJN03_17159, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588612.1	1.7e-20	65.93	hypothetical protein SDJN03_17177, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0050944.1	8.4e-15	56.57	hypothetical protein E6C27_scaffold761G00710 [Cucumis melo var. makuwa] >TYK1029...	[more]
KAG7031408.1	2.3e-12	56.25	hypothetical protein SDJN02_05448, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022151002.1	3.0e-12	54.55	uncharacterized protein LOC111019023 [Momordica charantia]	[more]

BLAST of Clc03G19190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G19190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CEU1	4.1e-15	56.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7J7D0P0	1.4e-12	59.38	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G01113 ...	[more]
A0A6J1DCB3	1.4e-12	54.55	uncharacterized protein LOC111019023 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A2P5D158	1.6e-11	56.45	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_106230 PE...	[more]
A0A2P5EVE2	1.6e-11	56.45	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_146600 PE=4 SV...	[more]

BLAST of Clc03G19190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05725.1	1.6e-11	50.75	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	3.6e-08	51.11	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	5.3e-07	53.49	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	6.9e-07	35.29	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	4.4e-06	39.29	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 50..94 e-value: 3.0E-22 score: 78.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 29..93
None	No IPR available	PANTHER	PTHR33193:SF48	SUBFAMILY NOT NAMED	coord: 29..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G19190.1	Clc03G19190.1	mRNA