Clc03G19100 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G19100
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Single-stranded DNA-binding protein
Location	ClcChr03: 31333311 .. 31337149 (-)
RNA-Seq Expression	Clc03G19100
Synteny	Clc03G19100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATAAATAAATAAGTAGTAAGGCGTAAAGCCCTACTTCTACCCTGATCGAATCGTCACTTCCATGTTTGCTATCTCTCGATCAACATGAACGCAGTCGCAATGAGATTCCTCAAGCGTTTCAGAATTTCTTCTTCAAATTTCCCCACATCTTCGTTTGGTACTCTCTCTCTCTCACTTTGTTAATTAAGGCGTATGTTCTTTCTGTTATACGAATTGCTTTCTGTTGAGACCTGAAGGAATTTCCCAAGACGTTTCTATGGTTAAGTGTCCAAAAGGTCCTTAGATTTTTTAACGCAGCTTTCCTACTTTTTGCAATTTTATTATCTTCGGGGTGCTTTTTATCAAATTCATGCTGGGAGAACTTGTTTATGTATGTTTTTTTTTTTTAATTTGACTGGCCCAACCAAGAACTTGGCTATTTTTATGTATTGGGTTTATCTAAGTATAATTTGTGTGCTGGAGGGATGGCTTGGATAATTTTTGAACGTTTGGTTGTAGTGGCAAGTGGGCAAGCAAGCTCGAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGATAGAGATGTTGACGAGAACAATGGAGAAGAAGAAGAATATGATGAATCTTTTAATGATAAAATTGAATTACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGTATCTGATCTTTGTCTATAGATGTGTTCCATTTTACCCAATAAGTCAATATCCTGTTCTTTTGATGGTACTTCGTGATTGTTTGGTGATTGTTTAACTTAACTTTTTTCAAATTTACAAACTATTCAAAAGTAAGGAAAAGCTTACATATTTTTGGTTCTTAGAAAATGTGCCTAGTGCCTTGCCTTCTTTTGTTGATGAGTTTTAAGGAAAGAGAAGCCTCGTGTCCTTTATGTATTTTAGAAAGAATAAGAAGGGGGTGTAGCGATTTAGTGAGATATTGTTGTGAGCAAGGGCAAGGGCAAAAACGAGAACTTATGTGTCTAGAGCTTGAACTTCTAAATATGGTGTAAGAGAGTAGGATATATGGTATATGCGTTTGATGTATTGTAAAATTTCAGGTGAGCAAGTACGGCGAGCAAGTACGATGACTAGTTTCTTGGCTAGGAAAGTCTTATAAGAATCTTGTAAAGGAGACTTGAGTTTGGGAGAAACCCAAACCTCAGGAATTTTGGTTGTACTGGAATCTGTCACCGGTAGTGAAAGAGTTACTCACATGATAATTGGACTCATAATCAGCTATTTATAGACAAATTATGCTGCTTAATTAACGTTAGTAGAAAGCCTAATTAATCAGCTGAACTAAATAGCTAACTAAATTTCTTCTAGGGCATGGTTGCCTCTACCTCGGTCCTCTAGGGTTGTCTACTCTCATCTTTTGTGGAAGTTACCTTTCTCTGTATGTTATCCAAAAAAGGAATATATATATATCAGGCAAGAGTTTCCTCTCTTTGGCAACTGATCAAATATTTTCCTTGGAGGAGGGTTAATATTAAGTCCCACCCCAACTAAGCAAAAGAAATTGTCTTTAATTCAGGTGATAAGGTTATGTGAAAATGAGGGGAAAACCACAGAAATCATGTCTCTTCAAATTTGTTATTCTTCTGCAGGGAAAGAAGGGGTCAGCGATCCCCAACATGATGTCTTATTCTGTTTTAAAATGTGATCAAATGTTTACAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGCACGATAACAATCTTGACAGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAATCACTTGGTGCTCTTGCAGTTCAACAACTTGTTAAAAAGTATGATTTGAACATCTCATAAAAGCTAGTTTGTCTGTATGATTTCACTGATTCTTTGTGAAACTGTCAGTGCATCAGTTTATATTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATGTTCCAGAAATATGTGTTCGACGCGATGGTATTTCAACACATACTATTCTTTTTTTATTTCCTTTTCAATGTTTCTCTGAAATTAGTTGAACACTGAATTAATATGTAGTCATCATCTGATACTTCCTGTGCTTTCTGCATCTACTTCATTATTTCTTAAATGTCATTTTAAGCATATAAAAGGGTGTTCTTGGATGTTCATAACCATTATGGGTTGGCGTAGTGATAGTGGGAATATCTTAAAAAAGTCAAAGGGCCAGTGGGTTATGAGTTCAATCCATGGGGGCCACCTACCTAGGATTTAATATCCTACGGGTTTCGTTGACACTCAAATGTTGTAGGGTCAGGTGGGTTGTCTCGTGGGATAAGTCGAGGTGCACGTAAGCTGGCCTAGACACTCACGTATATCCAAAAAAAAAAAAAAAATTAACTCCTACAATTTTAGAAGTTCCAATCTGGCCCCTTTTATTTTGTTTGATTTTCCAAACAAAAAGTTGACAATATTACATTTTACGTTTTCTTTGGACATAACACATTTTCTTTTGGTGTGATAGAGAGGTGATGAGTTGGTGTCTAAAGAATATGTATCAAGTAAGAAAATGACAGGCTTCGAATCACTAAAGTGTATGTTAGTAAGAGAGGGAGGAAAGGAGAGGGTGAAATCGGGTAAGAGAATATAGTTAGTTATTGTGGGGGCCCAAAGGAATATTGTTAGTTAAGGGCCCTTGAGGAAGGGGTATGTATTGGGTGAGATGTGTGAGTGAAGGATCATCTTGAGATCGTTGTTAATATTCTCTATATGAGACTTAGGAGAGGAATTGGGAGCTCTGGAATTCTCCCAAACTGTTGATAAATAAAATTGATACGCCCAAAGTGCCAGCATATGGTAAACTCAAGTGTTTTGAGATATTTATCAGTCATTTTGACCCAAGTTGAAATTCTTGAAGCCATAGGAACGGATTGAAGGGGAAAAGAACAAACAATAGAAACAAAAATGGTAATTTATCCTAATTGTAATATAGTACGGACATAAAATTATTTACAACCATGCACAGATGATACTTTTGTTACAAGTTTCAATTTGATCTGTGGAAGAACTTATTCGGGACTCCTTTAACTCCCATGCTTCATTTTTGCAGGGAGGATTCGCCTTTTGAAGCCTGGAGAAAGTGCCAGCAATATTTATCTGAACGATTTAAGTGAGTTTGCCTGTTAACTATTTTGTTTATATGATTATCATCAAACATAGTAACAATCCAATGCATGGCAACTTTTTCATTCTTTCTCGCAATCTGACGTGCTATTTTTTTGCTGGTTTTGTGACTGACAGAAAGGTTGTTTCAGGATGAGACATAAAATGTTGCCTTGAAGTTTGTGTAGCTTTGTAATTTGGACAAGAGAGAGGGGGGCCGTTAATTGCCATTAAACTATTGAGCCATAGTTGAGCACTGAACCACCAGTCCCCCATAATTCTCTTCCTGTTATTGTTTATTAACATTGTAGCATTTTCTTCTTCAAGGCTTTAAGCCAGTTTTGTGTTGGATTGGCAAGGGAATATTATAGGTACACAAGTCTTTAATCTCCTTTAAATGCACTTCATGCATCATAATTTTGAAGTCCACAGATGAAATATAGTTCATAGTCTTGTAGCTGTTCATTGTTATTAAGTGTTGCTTGATAACCCCGGTTTATAGATGGTCCCTATTTCAGAGGAGATTATAACAATCTTTCCTTTCATTCCCTATTTCCATTCAAATTAATGTTTAGGAAAAGTATTTTGTTT

mRNA sequence

ATTAATAAATAAATAAGTAGTAAGGCGTAAAGCCCTACTTCTACCCTGATCGAATCGTCACTTCCATGTTTGCTATCTCTCGATCAACATGAACGCAGTCGCAATGAGATTCCTCAAGCGTTTCAGAATTTCTTCTTCAAATTTCCCCACATCTTCGTTTGTGGCAAGTGGGCAAGCAAGCTCGAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGATAGAGATGTTGACGAGAACAATGGAGAAGAAGAAGAATATGATGAATCTTTTAATGATAAAATTGAATTACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGCACGATAACAATCTTGACAGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAATCACTTGGTGCTCTTGCAGTTCAACAACTTGTTAAAAATGCATCAGTTTATATTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATGTTCCAGAAATATGTGTTCGACGCGATGGGAGGATTCGCCTTTTGAAGCCTGGAGAAAGTGCCAGCAATATTTATCTGAACGATTTAAAAAGGTTGTTTCAGGATGAGACATAAAATGTTGCCTTGAAGTTTGTGTAGCTTTGTAATTTGGACAAGAGAGAGGGGGGCCGTTAATTGCCATTAAACTATTGAGCCATAGTTGAGCACTGAACCACCAGTCCCCCATAATTCTCTTCCTGTTATTGTTTATTAACATTGTAGCATTTTCTTCTTCAAGGCTTTAAGCCAGTTTTGTGTTGGATTGGCAAGGGAATATTATAGGTACACAAGTCTTTAATCTCCTTTAAATGCACTTCATGCATCATAATTTTGAAGTCCACAGATGAAATATAGTTCATAGTCTTGTAGCTGTTCATTGTTATTAAGTGTTGCTTGATAACCCCGGTTTATAGATGGTCCCTATTTCAGAGGAGATTATAACAATCTTTCCTTTCATTCCCTATTTCCATTCAAATTAATGTTTAGGAAAAGTATTTTGTTT

Coding sequence (CDS)

ATGAACGCAGTCGCAATGAGATTCCTCAAGCGTTTCAGAATTTCTTCTTCAAATTTCCCCACATCTTCGTTTGTGGCAAGTGGGCAAGCAAGCTCGAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGATAGAGATGTTGACGAGAACAATGGAGAAGAAGAAGAATATGATGAATCTTTTAATGATAAAATTGAATTACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGCACGATAACAATCTTGACAGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAATCACTTGGTGCTCTTGCAGTTCAACAACTTGTTAAAAATGCATCAGTTTATATTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATGTTCCAGAAATATGTGTTCGACGCGATGGGAGGATTCGCCTTTTGAAGCCTGGAGAAAGTGCCAGCAATATTTATCTGAACGATTTAAAAAGGTTGTTTCAGGATGAGACATAA

Protein sequence

MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDESFNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQRIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNVPEICVRRDGRIRLLKPGESASNIYLNDLKRLFQDET

Homology

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BLAST of Clc03G19100 vs. NCBI nr
Match: XP_038878660.1 (single-stranded DNA-binding protein, mitochondrial [Benincasa hispida])

HSP 1 Score: 378.6 bits (971), Expect = 3.5e-101
Identity = 189/217 (87.10%), Postives = 203/217 (93.55%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MNAVAMRFL RFRISSSNFPT+SFVAS Q S KLWLST ASESD DV++NNGEE+EYD+ 
Sbjct: 1   MNAVAMRFLNRFRISSSNFPTTSFVASRQTSWKLWLSTDASESDVDVEKNNGEEDEYDQF 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
           FN+K+ELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITI TVGTGGMFDQ
Sbjct: 61  FNEKVELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLP+PAQWHRIAVHNE LGA AVQQLVKNASVY+EGDIETRVYNDSI GEVKN+
Sbjct: 121 RIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSIGGEVKNI 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLKR-LFQDET 217
           PEICVRRDG++RLLKPGESASNI L+DLK  LFQ+ET
Sbjct: 181 PEICVRRDGKLRLLKPGESASNISLDDLKEGLFQNET 217

[Close]

BLAST of Clc03G19100 vs. NCBI nr
Match: XP_022135640.1 (single-stranded DNA-binding protein, mitochondrial [Momordica charantia])

HSP 1 Score: 364.4 bits (934), Expect = 6.8e-97
Identity = 180/209 (86.12%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MN+VA+RF K FRI SS FP SSFVAS Q SSKLW STG SESD DV++NN EEEEYD+ 
Sbjct: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
           F+DK+ELQPQGVDPRRGWG+RGVHKAIICGRVGQAPVQKILRNGRTITI TVGTGGMFDQ
Sbjct: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNE LGA AVQQLVK+ASVY+EGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLK 210
           PEICVRRDG+IRLLKP ESASNI L+DLK
Sbjct: 181 PEICVRRDGKIRLLKPAESASNISLDDLK 209

[Close]

BLAST of Clc03G19100 vs. NCBI nr
Match: XP_022968788.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_022968789.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 364.0 bits (933), Expect = 8.9e-97
Identity = 188/217 (86.64%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MNAVAMRFLK FRIS      SSFVAS Q SSKLWLSTGAS S  DV++NNGEEEEYD+ 
Sbjct: 1   MNAVAMRFLKHFRIS------SSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWG+RGVHKAIICGR+GQAPVQKILRNGRTITI TVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNE LGA AVQQLVKNASVY+EGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLKR-LFQDET 217
           PEICVRRDG+IRLLK GESASNI L+DLK  LFQ+ET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLFQNET 211

[Close]

BLAST of Clc03G19100 vs. NCBI nr
Match: XP_023516115.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95
Identity = 186/217 (85.71%), Postives = 196/217 (90.32%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MNAVAMRFLK FRIS      SSFVAS Q SSKLWLST AS S  DV++NNG+EEEYD+ 
Sbjct: 1   MNAVAMRFLKDFRIS------SSFVASRQTSSKLWLSTSASGSGIDVEKNNGDEEEYDDF 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWG+RGVHKAIICGR+GQAPVQKILRNGRTITI TVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNE LGA AVQQLVKNASVY+EGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLKR-LFQDET 217
           PEICVRRDG+IRLLK GESASNI L+DLK  LFQ+ET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNICLDDLKEGLFQNET 211

[Close]

BLAST of Clc03G19100 vs. NCBI nr
Match: KAG7024011.1 (Single-stranded DNA-binding protein, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95
Identity = 186/217 (85.71%), Postives = 195/217 (89.86%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MNAVAMRFLK FRIS      SSFVAS Q SSKLWLST AS S  DV++NNGEEEEYD+ 
Sbjct: 1   MNAVAMRFLKHFRIS------SSFVASRQTSSKLWLSTSASGSGIDVEKNNGEEEEYDDL 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWG+RGVHKAIICGR+GQAPVQKILRNGRTITI TVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNE LGA AVQQLVKNASVY+EGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLKR-LFQDET 217
           PEICVRRDG+IRLLK GESASNI L+DLK  LF +ET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNICLDDLKEGLFDNET 211

[Close]

BLAST of Clc03G19100 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 8.2e-69
Identity = 132/209 (63.16%), Postives = 163/209 (77.99%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MN++A+R  K  R SS     S    S +  SK W STG       +DE  G EE+++E+
Sbjct: 1   MNSLAIRVSKVLRSSS----ISPLAISAERGSKSWFSTG------PIDE--GVEEDFEEN 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
             ++ ELQP GVDPR+GWG+RGVH+AIICG+VGQAP+QKILRNGRT+TI TVGTGGMFDQ
Sbjct: 61  VTERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           R+V A + PKPAQWHRIAVHNE LG+ AVQ+L KN+SVY+EGDIETRVYNDSI+ EVK++
Sbjct: 121 RLVGATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSI 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLK 210
           PEICVRRDG+IR++K GES S I  ++LK
Sbjct: 181 PEICVRRDGKIRMIKYGESISKISFDELK 197

[Close]

BLAST of Clc03G19100 vs. ExPASy Swiss-Prot
Match: P18022 (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 GN=ssb PE=3 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-10
Identity = 37/114 (32.46%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 81  RGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQRIVEAKDLPKPAQWHRIAVH 140
           RG++K I+ GR+G  P  + + NG  +  L V T   +  R  +  ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESW--RDKQTGEMREQTEWHRVVLF 63

Query: 141 NESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNVPEICVRRDGRIRLL 195
            + L  +A + L K A VYIEG + TR ++D  NG  + + EI V+  G +++L
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQML 112

[Close]

BLAST of Clc03G19100 vs. ExPASy Swiss-Prot
Match: P28045 (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 GN=ssb PE=3 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-10
Identity = 37/114 (32.46%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 81  RGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQRIVEAKDLPKPAQWHRIAVH 140
           RG++K I+ GR+G  P  + + NG  +  L V T   +  R  +  ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESW--RDKQTGEMREQTEWHRVVLF 63

Query: 141 NESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNVPEICVRRDGRIRLL 195
            + L  +A + L K A VYIEG + TR ++D  NG  + + EI V+  G +++L
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQML 112

[Close]

BLAST of Clc03G19100 vs. ExPASy Swiss-Prot
Match: Q9ZAQ8 (Single-stranded DNA-binding protein OS=Rhodobacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.) OX=272943 GN=ssb PE=3 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 33/104 (31.73%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 83  VHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQRIVEAKDLPKPAQWHRIAVHNE 142
           V+K II G +G+ P  +  +NG  +  L + T   +  R   + +  +  +WH +A+ +E
Sbjct: 5   VNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDR--ASGERKERTEWHSVAIFDE 64

Query: 143 SLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNVPEICVR 187
           +L  +A Q L K ++VYIEG +ETR + D  +G+ +   E+ +R
Sbjct: 65  NLARVAEQYLRKGSTVYIEGQLETRKWQDQ-SGQDRYSTEVVLR 105

[Close]

BLAST of Clc03G19100 vs. ExPASy Swiss-Prot
Match: Q92G30 (Single-stranded DNA-binding protein OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=ssb PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 31/120 (25.83%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 83  VHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQRIVEAKDLPKPAQWHRIAVHNE 142
           ++K I+ G VG+ P  +    G+ I  L++ T   +  RI   +   +  +WHR+ + +E
Sbjct: 5   LNKVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDRITSER--KERTEWHRVVIFSE 64

Query: 143 SLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNVPEICVRRDGRIRLLKPGESASN 202
            L ++  + + K + +YIEG ++TR +ND+ +G+ K   E+ ++      +L   ++++N
Sbjct: 65  GLVSVVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILLDSKNSNN 121

[Close]

BLAST of Clc03G19100 vs. ExPASy TrEMBL
Match: A0A6J1C1K4 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007549 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.3e-97
Identity = 180/209 (86.12%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MN+VA+RF K FRI SS FP SSFVAS Q SSKLW STG SESD DV++NN EEEEYD+ 
Sbjct: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
           F+DK+ELQPQGVDPRRGWG+RGVHKAIICGRVGQAPVQKILRNGRTITI TVGTGGMFDQ
Sbjct: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNE LGA AVQQLVK+ASVY+EGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLK 210
           PEICVRRDG+IRLLKP ESASNI L+DLK
Sbjct: 181 PEICVRRDGKIRLLKPAESASNISLDDLK 209

[Close]

BLAST of Clc03G19100 vs. ExPASy TrEMBL
Match: A0A6J1HZ42 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467920 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.3e-97
Identity = 188/217 (86.64%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MNAVAMRFLK FRIS      SSFVAS Q SSKLWLSTGAS S  DV++NNGEEEEYD+ 
Sbjct: 1   MNAVAMRFLKHFRIS------SSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWG+RGVHKAIICGR+GQAPVQKILRNGRTITI TVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNE LGA AVQQLVKNASVY+EGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLKR-LFQDET 217
           PEICVRRDG+IRLLK GESASNI L+DLK  LFQ+ET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLFQNET 211

[Close]

BLAST of Clc03G19100 vs. ExPASy TrEMBL
Match: A0A6J1HCE9 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462062 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.4e-95
Identity = 184/217 (84.79%), Postives = 196/217 (90.32%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MNAVAMRF+K FRIS      SSFVAS Q SSKLWLST AS S  DV++NNG+EEEYD+ 
Sbjct: 1   MNAVAMRFVKHFRIS------SSFVASRQTSSKLWLSTSASGSGIDVEKNNGDEEEYDDF 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWG+RGVHKAIICGR+GQAPVQKILRNGRTITI TVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNE LGA AVQQLVKNASVY+EGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLKR-LFQDET 217
           PEICVRRDG+IRLLK GESASNI L+DLK  LF++ET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNICLDDLKEGLFENET 211

[Close]

BLAST of Clc03G19100 vs. ExPASy TrEMBL
Match: A0A0A0LVY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568540 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.5e-92
Identity = 174/217 (80.18%), Postives = 191/217 (88.02%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MN+VAMRFL RFR  SSNFPTSSFVAS Q SSK WLSTGASE D DV++N+GEE++YD  
Sbjct: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
            N   ELQPQGVDP RGWGYRGVHKAIICGRVGQAPVQKILRNGRTITI TVGTGGM+DQ
Sbjct: 61  SN---ELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RI + +DLPKPAQWHRIAVHNE LGA AVQ+L +NASVY+EGDIETRVYNDSINGEVKN+
Sbjct: 121 RIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNI 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLKR-LFQDET 217
           PEICVRRDG +RLLKPGESASNI L+DLK  LF ++T
Sbjct: 181 PEICVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT 214

[Close]

BLAST of Clc03G19100 vs. ExPASy TrEMBL
Match: A0A1S3BQI7 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492127 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.7e-89
Identity = 170/217 (78.34%), Postives = 189/217 (87.10%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MN+V +R L RFRI SSN PTSSFVAS Q SSK WLSTGASESD D+++N+G +++YD  
Sbjct: 1   MNSVTVRLLNRFRIPSSNSPTSSFVASTQTSSKFWLSTGASESDVDIEKNDGGDDDYDAF 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
            N   ELQPQGVDP RGWGYRGVHKAIICGRVGQAPVQKILRNGRTITI TVGTGGM+DQ
Sbjct: 61  SN---ELQPQGVDPSRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           RIV+ + LPKPAQWHRIAVHNE LGA AVQ+L KNASVY+EGDIETRVYNDSINGEVKN+
Sbjct: 121 RIVDGRGLPKPAQWHRIAVHNELLGAYAVQKLCKNASVYVEGDIETRVYNDSINGEVKNI 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLK-RLFQDET 217
           PEICVRRDG + LLKPGESASN+ L+DLK RLF +ET
Sbjct: 181 PEICVRRDGMLHLLKPGESASNLSLDDLKERLFSNET 214

[Close]

BLAST of Clc03G19100 vs. TAIR 10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein )

HSP 1 Score: 261.5 bits (667), Expect = 5.8e-70
Identity = 132/209 (63.16%), Postives = 163/209 (77.99%), Query Frame = 0


Query: 1   MNAVAMRFLKRFRISSSNFPTSSFVASGQASSKLWLSTGASESDRDVDENNGEEEEYDES 60
           MN++A+R  K  R SS     S    S +  SK W STG       +DE  G EE+++E+
Sbjct: 1   MNSLAIRVSKVLRSSS----ISPLAISAERGSKSWFSTG------PIDE--GVEEDFEEN 60

Query: 61  FNDKIELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQ 120
             ++ ELQP GVDPR+GWG+RGVH+AIICG+VGQAP+QKILRNGRT+TI TVGTGGMFDQ
Sbjct: 61  VTERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNV 180
           R+V A + PKPAQWHRIAVHNE LG+ AVQ+L KN+SVY+EGDIETRVYNDSI+ EVK++
Sbjct: 121 RLVGATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSI 180

Query: 181 PEICVRRDGRIRLLKPGESASNIYLNDLK 210
           PEICVRRDG+IR++K GES S I  ++LK
Sbjct: 181 PEICVRRDGKIRMIKYGESISKISFDELK 197

[Close]

BLAST of Clc03G19100 vs. TAIR 10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 102.4 bits (254), Expect = 4.5e-22
Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 82  GVHKAIICGRVGQAPVQKILRNGRTITILTVGTGGMFDQRIVEAKDLPK------PAQWH 141
           G+ KAI+ G+VGQ P+QK L++GRT+T+ +VGTGG+ + R     + P+        QWH
Sbjct: 79  GIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQWH 138

Query: 142 RIAVHNESLGALAVQQLVKNASVYIEGDIETRVYNDSINGEVKNVPEICVRRDGRIRLL 195
           R++V+ E L  L ++ +     +Y+EG++ET+++ D + G V+ + E+ +RR+GR+  L
Sbjct: 139 RVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFL 197

The following BLAST results are available for this feature:

BLAST of Clc03G19100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878660.1	3.5e-101	87.10	single-stranded DNA-binding protein, mitochondrial [Benincasa hispida]	[more]
XP_022135640.1	6.8e-97	86.12	single-stranded DNA-binding protein, mitochondrial [Momordica charantia]	[more]
XP_022968788.1	8.9e-97	86.64	single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_022968...	[more]
XP_023516115.1	1.7e-95	85.71	single-stranded DNA-binding protein, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
KAG7024011.1	1.7e-95	85.71	Single-stranded DNA-binding protein, mitochondrial [Cucurbita argyrosperma subsp...	[more]

BLAST of Clc03G19100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	8.2e-69	63.16	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P18022	3.0e-10	32.46	Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 G...	[more]
P28045	3.0e-10	32.46	Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 G...	[more]
Q9ZAQ8	4.3e-09	31.73	Single-stranded DNA-binding protein OS=Rhodobacter sphaeroides (strain ATCC 1702...	[more]
Q92G30	4.3e-09	25.83	Single-stranded DNA-binding protein OS=Rickettsia conorii (strain ATCC VR-613 / ...	[more]

BLAST of Clc03G19100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1K4	3.3e-97	86.12	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]
A0A6J1HZ42	4.3e-97	86.64	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1HCE9	2.4e-95	84.79	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita moschata OX=3662...	[more]
A0A0A0LVY2	5.5e-92	80.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568540 PE=4 SV=1	[more]
A0A1S3BQI7	5.7e-89	78.34	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Clc03G19100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11060.1	5.8e-70	63.16	mitochondrially targeted single-stranded DNA binding protein	[more]
AT3G18580.1	4.5e-22	37.82	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 82..195 e-value: 1.6E-18 score: 68.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..62
None	No IPR available	PANTHER	PTHR10302:SF13	SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL	coord: 1..210
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 83..186 e-value: 3.0E-21 score: 75.4
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 83..192 score: 12.214489
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 87..187 e-value: 4.09563E-15 score: 66.4818
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 1..210
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 81..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G19100.1	Clc03G19100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001732	formation of cytoplasmic translation initiation complex
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003743	translation initiation factor activity