Clc03G19045 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G19045
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
LocationClcChr03: 31277217 .. 31279510 (+)
RNA-Seq ExpressionClc03G19045
SyntenyClc03G19045
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGAACAGAATCTTGGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGGGACTTTCCCGACCTGGATTCCTATCAAACATACTATGGATGATGGAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAAAGACAGTACAGCGCGATCGCTAAAATGTTGGGTCCAGGCTGTAGTGGGTTTGGGTGGAATGCGAAGCGCAAATGTATTGATTGTGAGGCAGAGATATTTGACGCATGGGTCAAGGTAATTTAATTACATGTTTTATTTATTTCTTCTTCGTTTAAATTTGTATAGGCCCTAACATAACACAAGTCACCTTTAACAGAGTCATCCGAGTGCAAAAGAATTGCGCCATATTCCATACTATGATGAATTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTTATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAAGGAGTACATCCTGAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATTCACCTTTTGCTAGCTCGCCCCTGTCAGAGGACTTTTCGACTACCCCAGCGGTAGAGGGTCTAGGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCGAAGTTCATCGATTGGAGAGTACAGCGAGGTGGTTCGTAAGGGATTCCAACTTCTGACGAAGTCTATTGACGACATTGCACAGTGGCCTGTCATGAACGAGGACCTGGCAAGACGTCGTTGTCGAGAACTATACGCCGAGCTGCAATCCATTCCTGGTCTATCGGTACATGATGGATTGACTGTTGCATGGTCATTGCTTGCAGATCCAATGTTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTATGACTATTGCATGCAAGTCCTCGGGCAACGACGGGATCCAGCACCATGACTATATTTTTTCTCCCTTCAATTTGCAACCCTAGTTACTTTATGGTTAAGGAACTTTATCTTTCCATGATGTTGTTTGTAATTTGAATTATGTGTACTTTTTTTCGAACTTTAATTTTATATCGTTGTCCTTCTATTATATACTAACATTATTTTACTTTTAATTCTAACATATTGTGATAGTTGAAATAGATGTACAAAAAAAAAAAAAACAGTCGAAATAATACTTCAAGAAAAAGTAGTCAATATTATAATATAACATGATAATTTGAAATAATATTTAAAAAGAAAAAAAATCAAAATCAGTCTTATAGTATGGTAGTTTAATTTTGTATAGTATGAACAAATAAAATTCAAAATACTATCATGGTTAAAAAAGATGTAGAAAAAAAACAGTGAAAATAATATTTTTTTAAAAAAAAGTTCAAAATACTATTTAAAAAGAAAAAAAATCATAATTATAATATAGTATGATAGTTTCATTTTCTATGGTATGAACAAATATAGTTTAAAATATATGATGCTTAAAACAAATCTAGAAAAAAAATTACTAAAAATAATATTAAAAAAATAAAAACAGTCAAAATAATATTTAAAAGAAAAAAAATCAAAATTATAATATACTATGATAGTTTAATTTTCTATAGTATGAACCGACAAATTTCAACTTATATTATGCTTAAAACAGATGTAGAAAAAAAAAACAACCATAAAAATATTAAAAGAAAAAAAAAACAGCCAAACCCAACCCAAACCCAACCTGCAATCCAAACACTGTAATCAGAAACGCAGCCAATCCAACCCTGCCCTCCAAACACCGTAATCAGATTCCAGTGTATTCCAATTCCAGACAACAAAACCTATCGTAATCAAATTCCCAGTAATCTGATTACAATCCAGCACCCCAAATACCCCGTAAATGTTGAATATTTAAAAAGGAAAAAAAATCCTCAAAATTATTAAACTATTTAAAATTAGAAAGAAAAAATTACACGATCCGTAAGTTTAGCTATGTCCGATTTTCTTTTCTCAGAAGAAGAATAATAAAGGAAGCAACGAAACTAAAAATCCAAGGGGCAGTTTCTTCCGACCTCCATGTCTCCGAAGACCACTTCTCCATCTTCTTCCCCACGATTTACAGCCCTTCTCTTTCTCTTTTAACTTACTTTTCTTCTGTTGGTTTTCAAATGCAGCATAATCCTTCCTCAGATTTCCTTTCAGGCAAGTTCTTTCTCTCCCTCGCTCTGTTGCTTCCCTGTTTCTGCATTTCAAAAAATGGTTCAAATTGCGGAGAAGGGGAAAGATGTTGTATTCTTTTGA

mRNA sequence

ATGAGGAGAACAGAATCTTGGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGGGACTTTCCCGACCTGGATTCCTATCAAACATACTATGGATGATGGAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAAAGACAGTACAGCGCGATCGCTAAAATGTTGGGTCCAGGCTGTAGTGGGTTTGGGTGGAATGCGAAGCGCAAATGTATTGATTGTGAGGCAGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAGAATTGCGCCATATTCCATACTATGATGAATTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTTATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAAGGAGTACATCCTGAACAACCACATAATCCTTCCTCAGATTTCCTTTCAGGCAAGTTCTTTCTCTCCCTCGCTCTGTTGCTTCCCTGTTTCTGCATTTCAAAAAATGGTTCAAATTGCGGAGAAGGGGAAAGATGTTGTATTCTTTTGA

Coding sequence (CDS)

ATGAGGAGAACAGAATCTTGGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGGGACTTTCCCGACCTGGATTCCTATCAAACATACTATGGATGATGGAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAAAGACAGTACAGCGCGATCGCTAAAATGTTGGGTCCAGGCTGTAGTGGGTTTGGGTGGAATGCGAAGCGCAAATGTATTGATTGTGAGGCAGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAGAATTGCGCCATATTCCATACTATGATGAATTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTTATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAAGGAGTACATCCTGAACAACCACATAATCCTTCCTCAGATTTCCTTTCAGGCAAGTTCTTTCTCTCCCTCGCTCTGTTGCTTCCCTGTTTCTGCATTTCAAAAAATGGTTCAAATTGCGGAGAAGGGGAAAGATGTTGTATTCTTTTGA

Protein sequence

MRRTESWWSVWSSVCSLDTGELITGLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKELRHIPYYDELAIVFGKDRATGSYATTTAEVGSEPVMEEEKEYILNNHIILPQISFQASSFSPSLCCFPVSAFQKMVQIAEKGKDVVFF
Homology
[Close]
BLAST of Clc03G19045 vs. NCBI nr
Match: KAA0064810.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-31
Identity = 64/117 (54.70%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIAKM GP CSGFGWN +
Sbjct: 38  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAKMRGPACSGFGWNDE 97

Query: 85  RKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG+DRATG +A T A+VGS
Sbjct: 98  EKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGS 154

[Close]
BLAST of Clc03G19045 vs. NCBI nr
Match: KAA0067583.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-31
Identity = 64/117 (54.70%), Postives = 88/117 (75.21%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN +
Sbjct: 38  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE 97

Query: 85  RKCIDCEAEIFDAWVKSHPSAKELRHIP--YYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AKEL + P  YYDEL  VFG+DRATG +A T A+VGS
Sbjct: 98  EKCIVAEKELFDNWVRSHPAAKELLNKPFSYYDELTYVFGRDRATGRFAETFADVGS 154

[Close]
BLAST of Clc03G19045 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-31
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN +
Sbjct: 38  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE 97

Query: 85  RKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG+DRATG +A T A+VGS
Sbjct: 98  EKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGS 154

[Close]
BLAST of Clc03G19045 vs. NCBI nr
Match: KAA0065477.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-31
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN +
Sbjct: 14  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE 73

Query: 85  RKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG+DRATG +A T A+VGS
Sbjct: 74  EKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGS 130

[Close]
BLAST of Clc03G19045 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-31
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN +
Sbjct: 38  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE 97

Query: 85  RKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG+DRATG +A T A+VGS
Sbjct: 98  EKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGS 154

[Close]
BLAST of Clc03G19045 vs. ExPASy TrEMBL
Match: A0A5A7VCA3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001180 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.7e-32
Identity = 64/117 (54.70%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIAKM GP CSGFGWN +
Sbjct: 38  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAKMRGPACSGFGWNDE 97

Query: 85  RKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG+DRATG +A T A+VGS
Sbjct: 98  EKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGS 154

[Close]
BLAST of Clc03G19045 vs. ExPASy TrEMBL
Match: A0A5A7VHM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00480 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 7.5e-32
Identity = 64/117 (54.70%), Postives = 88/117 (75.21%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN +
Sbjct: 38  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE 97

Query: 85  RKCIDCEAEIFDAWVKSHPSAKELRHIP--YYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AKEL + P  YYDEL  VFG+DRATG +A T A+VGS
Sbjct: 98  EKCIVAEKELFDNWVRSHPAAKELLNKPFSYYDELTYVFGRDRATGRFAETFADVGS 154

[Close]
BLAST of Clc03G19045 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.7e-31
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN +
Sbjct: 38  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE 97

Query: 85  RKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG+DRATG +A T A+VGS
Sbjct: 98  EKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGS 154

[Close]
BLAST of Clc03G19045 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.7e-31
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN +
Sbjct: 38  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE 97

Query: 85  RKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG+DRATG +A T A+VGS
Sbjct: 98  EKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGS 154

[Close]
BLAST of Clc03G19045 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.7e-31
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 25  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAK 84
           G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN +
Sbjct: 38  GTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDE 97

Query: 85  RKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFGKDRATGSYATTTAEVGS 140
            KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG+DRATG +A T A+VGS
Sbjct: 98  EKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGS 154

[Close]
BLAST of Clc03G19045 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 5.0e-04
Identity = 25/105 (23.81%), Postives = 46/105 (43.81%), Query Frame = 0 

Query: 54  LESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAK--ELRHI 113
           L  R   L + Y  +  +L     GF W+  R  I  +  ++D+++K HP A+   ++ +
Sbjct: 223 LRHRYNKLLKYYKDMEAILKE--DGFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSL 282

Query: 114 PYYDELAIVF------GKDRATGSYATTTAEVGSEPVMEEEKEYI 151
           P Y++L  +F      G D      A  T+E  +      ++  I
Sbjct: 283 PSYNDLDTIFACQAEQGTDHRDDGSAAQTSETKASQEQNSDRTRI 325

[Close]
BLAST of Clc03G19045 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 5.0e-04
Identity = 25/105 (23.81%), Postives = 46/105 (43.81%), Query Frame = 0 

Query: 54  LESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAK--ELRHI 113
           L  R   L + Y  +  +L     GF W+  R  I  +  ++D+++K HP A+   ++ +
Sbjct: 223 LRHRYNKLLKYYKDMEAILKE--DGFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSL 282

Query: 114 PYYDELAIVF------GKDRATGSYATTTAEVGSEPVMEEEKEYI 151
           P Y++L  +F      G D      A  T+E  +      ++  I
Sbjct: 283 PSYNDLDTIFACQAEQGTDHRDDGSAAQTSETKASQEQNSDRTRI 325

The following BLAST results are available for this feature:
BLAST of Clc03G19045 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0064810.11.2e-3154.70retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0067583.11.6e-3154.70retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0038975.13.5e-3153.85retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065477.13.5e-3153.85retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ96194.13.5e-3153.85retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p... [more]
BLAST of Clc03G19045 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc03G19045 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VCA35.7e-3254.70Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VHM37.5e-3254.70Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CWL21.7e-3153.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRV11.7e-3153.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DCZ11.7e-3153.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Clc03G19045 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G24960.15.0e-0423.81unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.25.0e-0423.81unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 28..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G19045.1Clc03G19045.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane