Clc03G18570 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G18570
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Nuclear transcription factor Y subunit B
Location	ClcChr03: 30877028 .. 30877486 (-)
RNA-Seq Expression	Clc03G18570
Synteny	Clc03G18570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTAATGCAAGACTCATATTAGATCAAAAAAGAATACATTGAGGTTAAGAATGGGAGATCAGCATAATGGGGATGAGTTTGTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGACGACAATGCAAGAATGTGCAAGTGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAAATGTCACAAAGAGAATCGAAGAACTCTGAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTATGCTGAGATTTCTGAAAAGTACTTGCTCAAGTATAGGGAAGTTGAGAGAATCAAGGCTGATCAATATAAATGCAAAATTACTCAACAACTACAACAAGGAGAAGAAGAAGATGATGATGATGATGATGAACAAGAACACAATAATCAATTTTAA

mRNA sequence

ATGAGAATGGGAGATCAGCATAATGGGGATGAGTTTGTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGACGACAATGCAAGAATGTGCAAGTGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAAATGTCACAAAGAGAATCGAAGAACTCTGAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTATGCTGAGATTTCTGAAAAGTACTTGCTCAAGTATAGGGAAGTTGAGAGAATCAAGGCTGATCAATATAAATGCAAAATTACTCAACAACTACAACAAGGAGAAGAAGAAGATGATGATGATGATGATGAACAAGAACACAATAATCAATTTTAA

Coding sequence (CDS)

ATGAGAATGGGAGATCAGCATAATGGGGATGAGTTTGTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGACGACAATGCAAGAATGTGCAAGTGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAAATGTCACAAAGAGAATCGAAGAACTCTGAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTATGCTGAGATTTCTGAAAAGTACTTGCTCAAGTATAGGGAAGTTGAGAGAATCAAGGCTGATCAATATAAATGCAAAATTACTCAACAACTACAACAAGGAGAAGAAGAAGATGATGATGATGATGATGAACAAGAACACAATAATCAATTTTAA

Protein sequence

MRMGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEEDDDDDDEQEHNNQF

Homology

[Close]

BLAST of Clc03G18570 vs. NCBI nr
Match: KAA0050890.1 (nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 102/133 (76.69%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAK TMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+  KYLLKYREVERIK D+YKCKITQ+L      
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLL----P 120

Query: 123 DDDDDDEQEHNNQ 136
            DDDD EQE N++
Sbjct: 121 QDDDDKEQEDNHR 129

[Close]

BLAST of Clc03G18570 vs. NCBI nr
Match: XP_008451142.1 (PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo] >TYK10242.1 nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-45
Identity = 101/133 (75.94%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAK TMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+  KYL KYREVERIK D+YKCKITQ+L      
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLL----P 120

Query: 123 DDDDDDEQEHNNQ 136
            DDDD EQE N++
Sbjct: 121 QDDDDKEQEDNHR 129

[Close]

BLAST of Clc03G18570 vs. NCBI nr
Match: XP_022961414.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-41
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEE 123
           RRTLNGDDICWAFGS+GLDNYAE S KYLLKYR+VERI A Q+K  I  + Q+ ++E
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPEQQKHDQE 117

[Close]

BLAST of Clc03G18570 vs. NCBI nr
Match: XP_022968852.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita maxima])

HSP 1 Score: 178.7 bits (452), Expect = 3.4e-41
Identity = 93/131 (70.99%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQ-GEEEDD 125
           RRTLNGDDICWAFGS+GLDNYAE S KYLLKYR++ERI A Q+K  I ++ Q+ G+E + 
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINA-QFKTNIAREQQEHGQEREQ 122

Query: 126 DDDDEQEHNNQ 136
           + + EQE   +
Sbjct: 123 EQEQEQEQEQE 131

[Close]

BLAST of Clc03G18570 vs. NCBI nr
Match: KAG6590402.1 (Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.9 bits (450), Expect = 5.7e-41
Identity = 90/121 (74.38%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEEDDD 125
           RRTLNGDDICWAFGS+GLDNYAE S KYLLKYR+VERI A Q+K  I  + Q+ ++E + 
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPEQQKHDQEQEQ 121

Query: 126 D 127
           +
Sbjct: 123 E 121

[Close]

BLAST of Clc03G18570 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-29
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANVGRIMK ILP  AK+SKEAK TMQEC SEFISFVT EA+ KCHKE R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 75  CWAFGSYGLDNYAEISEKYLLKYREVERIKADQY 109
           CWA  + G D+YA   +KYL +YR +E  K + +
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHH 149

[Close]

BLAST of Clc03G18570 vs. ExPASy Swiss-Prot
Match: O04027 (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.8e-28
Identity = 70/127 (55.12%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 10  DEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTL 69
           DE   LPIANVGR+MK+ILP  AKISKEAK T+QECA+EFISFVT EA++KCH+ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 70  NGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEEDDDDDDE 129
           NGDDI WA  + GLDNYA+   ++L KYRE ER + +  K          E+E +   D 
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNK---GSNDSGNEKETNTRSDV 122

Query: 130 QEHNNQF 137
           Q  + +F
Sbjct: 123 QNQSTKF 126

[Close]

BLAST of Clc03G18570 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-25
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANV RIMKK LP  AKISK+AK TMQEC SEFISFVT EA+ KC KE R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 75  CWAFGSYGLDNYAEISEKYLLKYREVE 102
            WA  + G ++Y E  + YL ++RE+E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of Clc03G18570 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANV RIMKK LP  AKISK+AK T+QEC SEFISF+T EA+ KC +E R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 75  CWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEE 123
            WA  + G ++Y E  + YL KYREVE  K        T   +QG++E
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVEGEKT-------TTAGRQGDKE 126

[Close]

BLAST of Clc03G18570 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 4   GDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHK 63
           G     D F  LPIAN+ RIMKK +P   KI+K+AK T+QEC SEFISF+TSEA+ KC +
Sbjct: 27  GSVREQDRF--LPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQR 86

Query: 64  ENRRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVE 102
           E R+T+NGDD+ WA  + G ++Y E  + YL KYRE+E
Sbjct: 87  EKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 122

[Close]

BLAST of Clc03G18570 vs. ExPASy TrEMBL
Match: A0A5A7U6S7 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00150 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.5e-47
Identity = 102/133 (76.69%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAK TMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+  KYLLKYREVERIK D+YKCKITQ+L      
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLL----P 120

Query: 123 DDDDDDEQEHNNQ 136
            DDDD EQE N++
Sbjct: 121 QDDDDKEQEDNHR 129

[Close]

BLAST of Clc03G18570 vs. ExPASy TrEMBL
Match: A0A5D3CG76 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003890 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.9e-46
Identity = 101/133 (75.94%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAK TMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+  KYL KYREVERIK D+YKCKITQ+L      
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLL----P 120

Query: 123 DDDDDDEQEHNNQ 136
            DDDD EQE N++
Sbjct: 121 QDDDDKEQEDNHR 129

[Close]

BLAST of Clc03G18570 vs. ExPASy TrEMBL
Match: A0A1S3BRX1 (nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC103492518 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.9e-46
Identity = 101/133 (75.94%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAK TMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+  KYL KYREVERIK D+YKCKITQ+L      
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLL----P 120

Query: 123 DDDDDDEQEHNNQ 136
            DDDD EQE N++
Sbjct: 121 QDDDDKEQEDNHR 129

[Close]

BLAST of Clc03G18570 vs. ExPASy TrEMBL
Match: A0A6J1HDY6 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN=LOC111461996 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.5e-42
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEE 123
           RRTLNGDDICWAFGS+GLDNYAE S KYLLKYR+VERI A Q+K  I  + Q+ ++E
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPEQQKHDQE 117

[Close]

BLAST of Clc03G18570 vs. ExPASy TrEMBL
Match: A0A6J1HUN8 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=LOC111467987 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.6e-41
Identity = 93/131 (70.99%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQ-GEEEDD 125
           RRTLNGDDICWAFGS+GLDNYAE S KYLLKYR++ERI A Q+K  I ++ Q+ G+E + 
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINA-QFKTNIAREQQEHGQEREQ 122

Query: 126 DDDDEQEHNNQ 136
           + + EQE   +
Sbjct: 123 EQEQEQEQEQE 131

[Close]

BLAST of Clc03G18570 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-30
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANVGRIMK ILP  AK+SKEAK TMQEC SEFISFVT EA+ KCHKE R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 75  CWAFGSYGLDNYAEISEKYLLKYREVERIKADQY 109
           CWA  + G D+YA   +KYL +YR +E  K + +
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHH 149

[Close]

BLAST of Clc03G18570 vs. TAIR 10
Match: AT1G09030.1 (nuclear factor Y, subunit B4 )

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-29
Identity = 70/127 (55.12%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 10  DEFVELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTL 69
           DE   LPIANVGR+MK+ILP  AKISKEAK T+QECA+EFISFVT EA++KCH+ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 70  NGDDICWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEEDDDDDDE 129
           NGDDI WA  + GLDNYA+   ++L KYRE ER + +  K          E+E +   D 
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNK---GSNDSGNEKETNTRSDV 122

Query: 130 QEHNNQF 137
           Q  + +F
Sbjct: 123 QNQSTKF 126

[Close]

BLAST of Clc03G18570 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-26
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANV RIMKK LP  AKISK+AK TMQEC SEFISFVT EA+ KC KE R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 75  CWAFGSYGLDNYAEISEKYLLKYREVE 102
            WA  + G ++Y E  + YL ++RE+E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of Clc03G18570 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 114.4 bits (285), Expect = 7.2e-26
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANV RIMKK LP  AKISK+AK T+QEC SEFISF+T EA+ KC +E R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 75  CWAFGSYGLDNYAEISEKYLLKYREVERIKADQYKCKITQQLQQGEEE 123
            WA  + G ++Y E  + YL KYREVE  K        T   +QG++E
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVEGEKT-------TTAGRQGDKE 126

[Close]

BLAST of Clc03G18570 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIAN+ RIMKK LP   KI K+AK T+QEC SEFISF+TSEA+ KC KE R+T+NGDD+
Sbjct: 26  LPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDL 85

Query: 75  CWAFGSYGLDNYAEISEKYLLKYREVE 102
            WA  + G ++Y E  + YL +YRE+E
Sbjct: 86  LWAMATLGFEDYLEPLKIYLARYRELE 112

The following BLAST results are available for this feature:

BLAST of Clc03G18570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050890.1	1.6e-46	76.69	nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]	[more]
XP_008451142.1	1.0e-45	75.94	PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo] >TYK10242.1...	[more]
XP_022961414.1	2.0e-41	76.92	nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]	[more]
XP_022968852.1	3.4e-41	70.99	nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]	[more]
KAG6590402.1	5.7e-41	74.38	Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Clc03G18570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82248	3.1e-29	65.96	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O04027	9.8e-28	55.12	Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	2.1e-25	63.22	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	1.0e-24	55.56	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
P25209	1.0e-24	55.10	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]

BLAST of Clc03G18570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6S7	7.5e-47	76.69	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CG76	4.9e-46	75.94	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BRX1	4.9e-46	75.94	nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC1034925...	[more]
A0A6J1HDY6	9.5e-42	76.92	nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HUN8	1.6e-41	70.99	nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Clc03G18570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47810.1	2.2e-30	65.96	nuclear factor Y, subunit B5	[more]
AT1G09030.1	7.0e-29	55.12	nuclear factor Y, subunit B4	[more]
AT5G47640.1	1.5e-26	63.22	nuclear factor Y, subunit B2	[more]
AT4G14540.1	7.2e-26	55.56	nuclear factor Y, subunit B3	[more]
AT2G38880.2	1.2e-25	59.77	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 80..98 score: 27.75 coord: 42..60 score: 50.84 coord: 61..79 score: 27.27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..136
None	No IPR available	PANTHER	PTHR11064:SF83	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4	coord: 15..132
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 14..77 e-value: 4.7E-26 score: 90.8
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..136 e-value: 1.3E-39 score: 137.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 14..131
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 15..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G18570.2	Clc03G18570.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0048046	apoplast
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0004565	beta-galactosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding