Clc03G18390 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G18390
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Signal peptidase complex subunit 3
Location	ClcChr03: 30758416 .. 30760854 (+)
RNA-Seq Expression	Clc03G18390
Synteny	Clc03G18390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCTTTTGGTTATCGAGCCAATGCTTTGGTCACTTTCGCCGTCACCATTCTCGTAATTATGTGCGCCATGGCCTCCTTCTCCGATAACTTCAACTCTCCCTCTCCCACTGCCAGTGTTCAGGTCCACCATTCTTTTTCTCCTTGCTCTCTTTTTATTCTTTTCGGTTCTTTTTTTCTTTTTTTCCTTATGTTAGATCTATGGCTTGGACGTTTAGGGTTTTGCTCTGATTTCTGGGAGAGCCTGAATTTTGTCTGCATTTTGTTTGTTCTGATTGTTTTCTGTGGGTTTTAGGTGTTGAATATCAATTGGTTTCAGAAGCAGCTTCATGGAAATGACGAGGTATATTGTTGGAGATTCGTGTTTTGCTCGATTGTTTAATAGAATGCTGCAGATTATTTCTTTTATCTGATTGTATTTTGATTTTGTTTGGTCGAAGTCTATTTTGGGGTCTGATTCTGATGAATCTAGGGAATCTAGTGGAGAATGACATCTGAGTTTGTTTTCTTGCTAGTTACATTTTGATACGAGTATATTGATTGAAAGAATGGAAGTAGAGAAATGATGAATGCCCGTCCACTAATAGTTTCCTAAAATCCTTAGTCATGCGATCTTCATGTCAAATACCACCTCCAGTTCAACATTGGAGAAATGATAGAAATGTCCCTTTTTTTTTTTGTTTAGATGATATAATATTAAATATATCTTCACCAATCAACATAAGCTTTTAGGTCAATTGGTGATTTAACATGGAGTATTTGGTTTGAGGTGAATAAGAGAATTTTTAGATGGAGTGAGATTAGTTATCTCCATGGTGGAGATTAGTTAGCTTCAGTGCTTCTTTGTGGCTGTCCTCTGTCCTCTTTCAAGGATTTTTCTACGTATCATAGGCCTTCTTCTGGAGCCCTTTTTCTAATCTAGGGGGTATGGTGTAGGTTTGTCATTTTGACCCTTCTTTGGTTGGCTTTTCCTTCTGTAGGTGTTCTTATATTGTAAGTACAGTCTTGTTCTGAAAAGATAGAAAGAGAGAGAGAGAGAAAAAGGATATTTGTATAGGCTCTATTTTGCCCCCTCTCCAACAAGATCATGAAATATTTATGGAGGTTTCTATTAACCATCTTCAAATTTGCTTGAAATTTGGAAAAGTTTCAAATTGTTCTTTTCCTCATGCTCTGTAATCAGCTTTGTTCGTCAAAATTGTGAAAAGAGAGCAATACTCTTGAATGGGAGCACTCATTTAAAACTTAGCTCAGAAAACACTGTAGAGGACACATTGAAAGAGGCCACTAGGCAACTCATATTACTGAAAGGATGCTATCATGATCATGGTGGTAGTGCAATGTGATTCTTTGGATTGCTAGACATGCATCACTTAATTCTCTAGCCTGAGTTTACAATAGTTGAGCTAGGAAAGGGATTTCAAGTTGGTATCAAGTATCAAATAGTTGTTGTTCAGTTATTTCCAAACTCATGCAATATCGATAATTTCTTGGTTGATTTTTGGATGTTAATTGCATTACTAACGAGGATAGTCATTCATCCAACGGTGTTGATATTTATTATAGCCTTATACTATACAGTCTGTACTGAAAACCATTAACTGTGCAGGTCAGCATGACCTTAAATATCTCGGTGGACTTGCAGTCACTATTTACATGGAACACAAAGCAGGTATGGCAATAACCTATTTTATAATTTCCCTTTTCCCTTTGTGATTTTTGTGGCATTTCAGTGCCTTTTGAGATATTGAATACTGGAGCTCGAGTTATTGTGTTGAGGATCCAACTTGAAATCAATGACTTTTGCTATTTTTCATTGATTTGGAATATGGACACAAACACCAGTCAGCTGTACTTGTGTTTGGTTTAATATACTATACTACTTATTTCAACTGCAGTTTTCTCATCTTGTTTCTGGTTTCGGCTGTTTGTTTTCATATTATGACTAGCTGACTGAAATGAATGGCTTATTAGACTTTAACACAAGTTTACAGGTTTTTGTTTTTGTAGCTGCTGAGTATGAGACTCCTAAGAATTCCTTGAACCAGGTAAGCTCCATCAATACATGTTCTGGATTTCTAATCCTGCTGCTTATCTTATTCAGTTGTTATGACGTTGTCTTTCAGATCTCACTGTGGGATGGTATAATACCTTCCAAAGAAAACGCCAAATTTTCGATTCACACTTCAAACAAGTATCGTTTCATTGATCAGGTGACCTAGCTACATTCCATGATTAACAATTTAAAGATGAATTTACGTTTTTCATTTACACGAACCTTATCTTGTTATATCCCTTTTTTGTTTTGTAGGGAAGTAATCTCAAAGGTAAAGAATTCAACTTGACACTGCATTGGCATGTAATGCCGAAGACCGGTAAAATGTTCGCCGATAAGATAGTGATGACTGGGTATCGCTTACCGGAGGACTATCGATGA

mRNA sequence

ATGCATTCTTTTGGTTATCGAGCCAATGCTTTGGTCACTTTCGCCGTCACCATTCTCGTAATTATGTGCGCCATGGCCTCCTTCTCCGATAACTTCAACTCTCCCTCTCCCACTGCCAGTGTTCAGGTGTTGAATATCAATTGGTTTCAGAAGCAGCTTCATGGAAATGACGAGTCTGTACTGAAAACCATTAACTGTGCAGGTCAGCATGACCTTAAATATCTCGGTGGACTTGCAGTCACTATTTACATGGAACACAAAGCAGACTTTAACACAAGTTTACAGGTTTTTGTTTTTGTAGCTGCTGAGTATGAGACTCCTAAGAATTCCTTGAACCAGATCTCACTGTGGGATGGTATAATACCTTCCAAAGAAAACGCCAAATTTTCGATTCACACTTCAAACAAGTATCGTTTCATTGATCAGGGAAGTAATCTCAAAGGTAAAGAATTCAACTTGACACTGCATTGGCATGTAATGCCGAAGACCGGTAAAATGTTCGCCGATAAGATAGTGATGACTGGGTATCGCTTACCGGAGGACTATCGATGA

Coding sequence (CDS)

ATGCATTCTTTTGGTTATCGAGCCAATGCTTTGGTCACTTTCGCCGTCACCATTCTCGTAATTATGTGCGCCATGGCCTCCTTCTCCGATAACTTCAACTCTCCCTCTCCCACTGCCAGTGTTCAGGTGTTGAATATCAATTGGTTTCAGAAGCAGCTTCATGGAAATGACGAGTCTGTACTGAAAACCATTAACTGTGCAGGTCAGCATGACCTTAAATATCTCGGTGGACTTGCAGTCACTATTTACATGGAACACAAAGCAGACTTTAACACAAGTTTACAGGTTTTTGTTTTTGTAGCTGCTGAGTATGAGACTCCTAAGAATTCCTTGAACCAGATCTCACTGTGGGATGGTATAATACCTTCCAAAGAAAACGCCAAATTTTCGATTCACACTTCAAACAAGTATCGTTTCATTGATCAGGGAAGTAATCTCAAAGGTAAAGAATTCAACTTGACACTGCATTGGCATGTAATGCCGAAGACCGGTAAAATGTTCGCCGATAAGATAGTGATGACTGGGTATCGCTTACCGGAGGACTATCGATGA

Protein sequence

MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESVLKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGIIPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPEDYR

Homology

[Close]

BLAST of Clc03G18390 vs. NCBI nr
Match: XP_038878575.1 (signal peptidase complex subunit 3B-like [Benincasa hispida])

HSP 1 Score: 292.7 bits (748), Expect = 2.1e-75
Identity = 148/183 (80.87%), Postives = 159/183 (86.89%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDE V
Sbjct: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N              +++ ++    +NT  QVFVFVAAEYETPKNSLNQISLWDGI
Sbjct: 61  SMTLN--------------ISVDLQSLFTWNTK-QVFVFVAAEYETPKNSLNQISLWDGI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSK+NAKF+IHTSNKYRFIDQGSNL+GKEFNLTLHWHVMPKTGKMFADKIVM+GYRLPE
Sbjct: 121 IPSKDNAKFTIHTSNKYRFIDQGSNLRGKEFNLTLHWHVMPKTGKMFADKIVMSGYRLPE 167

Query: 181 DYR 184
           DYR
Sbjct: 181 DYR 167

[Close]

BLAST of Clc03G18390 vs. NCBI nr
Match: XP_008450666.1 (PREDICTED: signal peptidase complex subunit 3B-like [Cucumis melo] >TYK10227.1 signal peptidase complex subunit 3B-like [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 2.4e-74
Identity = 150/183 (81.97%), Postives = 156/183 (85.25%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANAL TFAVTILVIMCAMASFSD FN+PSPTA V+VLNINWFQKQLHGNDE V
Sbjct: 1   MHSFGYRANALATFAVTILVIMCAMASFSDTFNTPSPTARVEVLNINWFQKQLHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N +   DL+ L              +NT  QVFVFVAAEYETPKNSLNQISLWDGI
Sbjct: 61  SMTLNISA--DLQSL------------FTWNTK-QVFVFVAAEYETPKNSLNQISLWDGI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE
Sbjct: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 167

Query: 181 DYR 184
           DYR
Sbjct: 181 DYR 167

[Close]

BLAST of Clc03G18390 vs. NCBI nr
Match: XP_004135628.1 (signal peptidase complex subunit 3B [Cucumis sativus] >KAE8653375.1 hypothetical protein Csa_007160 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-73
Identity = 148/183 (80.87%), Postives = 156/183 (85.25%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANAL TFA+TILVIMCAMASFSD FN+PSPTASV+VLNINWFQKQLHGNDE V
Sbjct: 1   MHSFGYRANALATFAITILVIMCAMASFSDTFNTPSPTASVKVLNINWFQKQLHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N +   DL+ L              +NT  QVFVFVAAEYETPKNSLNQISLWDGI
Sbjct: 61  SMTLNISA--DLQSL------------FTWNTK-QVFVFVAAEYETPKNSLNQISLWDGI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMF +KIVMTGYRLPE
Sbjct: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFTNKIVMTGYRLPE 167

Query: 181 DYR 184
           DYR
Sbjct: 181 DYR 167

[Close]

BLAST of Clc03G18390 vs. NCBI nr
Match: XP_022131260.1 (signal peptidase complex subunit 3B-like [Momordica charantia])

HSP 1 Score: 279.3 bits (713), Expect = 2.5e-71
Identity = 141/183 (77.05%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANA+VTFAVTIL IMCAMASFSDNFNSPSPTA +QVLNI WFQKQLHGNDE V
Sbjct: 1   MHSFGYRANAVVTFAVTILAIMCAMASFSDNFNSPSPTAHIQVLNIKWFQKQLHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N              ++  M+    +NT  QVFVFVAAEYETPKNSLNQISLWD I
Sbjct: 61  SMTLN--------------ISADMQSLFTWNTK-QVFVFVAAEYETPKNSLNQISLWDAI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSKENA+FSIHT NKYRFIDQGSNL+GKEFN+TLHWHVMPKTGKMFADKIVM+GYRLPE
Sbjct: 121 IPSKENARFSIHTVNKYRFIDQGSNLRGKEFNMTLHWHVMPKTGKMFADKIVMSGYRLPE 167

Query: 181 DYR 184
           +YR
Sbjct: 181 EYR 167

[Close]

BLAST of Clc03G18390 vs. NCBI nr
Match: XP_022961511.1 (signal peptidase complex subunit 3B-like [Cucurbita moschata] >XP_022968805.1 signal peptidase complex subunit 3B-like [Cucurbita maxima] >XP_023515502.1 signal peptidase complex subunit 3B-like [Cucurbita pepo subsp. pepo] >KAG6590382.1 Signal peptidase complex subunit 3B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023945.1 Signal peptidase complex subunit 3B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.3 bits (708), Expect = 9.3e-71
Identity = 143/183 (78.14%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANALVTFAVTIL IMC MASFSDNFNSPSPTA VQVL+IN FQKQ+HGNDE V
Sbjct: 1   MHSFGYRANALVTFAVTILAIMCTMASFSDNFNSPSPTARVQVLSINRFQKQIHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N              +++ ++    +NT  QVFVFVAAEYETPKNSLNQISLWDGI
Sbjct: 61  TMTLN--------------ISMDLQSLFTWNTK-QVFVFVAAEYETPKNSLNQISLWDGI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSKENAKFSIHTSNKYRFIDQGSNL+GKEFNLTLHWHVMPKTGKM ADKIVMTGYRLP 
Sbjct: 121 IPSKENAKFSIHTSNKYRFIDQGSNLRGKEFNLTLHWHVMPKTGKMSADKIVMTGYRLPV 167

Query: 181 DYR 184
           DYR
Sbjct: 181 DYR 167

[Close]

BLAST of Clc03G18390 vs. ExPASy Swiss-Prot
Match: Q53YF3 (Signal peptidase complex subunit 3B OS=Arabidopsis thaliana OX=3702 GN=At5g27430 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.1e-64
Identity = 123/183 (67.21%), Postives = 143/183 (78.14%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANAL+TFAVTIL  +CA+ASFSDNF++ +P+A +Q+LNINWFQKQ HGNDE V
Sbjct: 1   MHSFGYRANALLTFAVTILAFICAIASFSDNFSNQNPSAQIQILNINWFQKQPHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N              +T  ++    +NT  QVF FVAAEYET KN+LNQ+SLWD I
Sbjct: 61  SLTLN--------------ITADLQSLFTWNTK-QVFAFVAAEYETSKNALNQVSLWDAI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IP KE+AKF I  SNKYRFIDQG NL+GK+FNLTLHWHVMPKTGKMFADKIVM+GYRLP 
Sbjct: 121 IPEKEHAKFWIQISNKYRFIDQGHNLRGKDFNLTLHWHVMPKTGKMFADKIVMSGYRLPN 167

Query: 181 DYR 184
            YR
Sbjct: 181 AYR 167

[Close]

BLAST of Clc03G18390 vs. ExPASy Swiss-Prot
Match: Q9MA96 (Signal peptidase complex subunit 3A OS=Arabidopsis thaliana OX=3702 GN=At3g05230 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-61
Identity = 117/183 (63.93%), Postives = 140/183 (76.50%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MH+FGYRANAL+TFAVT L  +CA+ASFSD F++ +P+A +Q+LNIN F+KQ HGNDE  
Sbjct: 1   MHTFGYRANALLTFAVTALAFICAIASFSDKFSNQNPSAEIQILNINRFKKQSHGNDEVS 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
           L                L ++  ++    +NT  QVFVFVAAEYETPKNSLNQ+SLWD I
Sbjct: 61  LT---------------LDISADLQSLFTWNTK-QVFVFVAAEYETPKNSLNQVSLWDAI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IP+KE+AKF I  SNKYRFIDQG NL+GK+FNLTLHWHVMPKTGKMFADKIV+ GY LP+
Sbjct: 121 IPAKEHAKFRIQVSNKYRFIDQGQNLRGKDFNLTLHWHVMPKTGKMFADKIVLPGYSLPD 167

Query: 181 DYR 184
            YR
Sbjct: 181 AYR 167

[Close]

BLAST of Clc03G18390 vs. ExPASy Swiss-Prot
Match: Q9LGB4 (Probable signal peptidase complex subunit 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0131800 PE=3 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 7.5e-31
Identity = 73/182 (40.11%), Postives = 93/182 (51.10%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHS+  R     T A  +L+  C  AS  D F+ PS  A   V  IN F KQL+GND   
Sbjct: 1   MHSWVQRLLTTATTAALLLLAACCAASALDAFHVPSVQAQAHVTKINRFHKQLNGND--- 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
                                             +VFVF+ AEYE  KNSLNQ+SLWD I
Sbjct: 61  ----------------------------------KVFVFLTAEYENSKNSLNQVSLWDHI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IP K+ A   +   +KY  IDQGS+L+GK+  L LHWHVMPK G M  D++ ++ + LP+
Sbjct: 121 IPDKDKANLQVEVKSKYPLIDQGSSLRGKKVQLVLHWHVMPKAGVMIRDRMALSEFNLPD 145

Query: 181 DY 183
            Y
Sbjct: 181 SY 145

[Close]

BLAST of Clc03G18390 vs. ExPASy Swiss-Prot
Match: Q9VCA9 (Signal peptidase complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=Spase22-23 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 53/189 (28.04%), Postives = 88/189 (46.56%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MH+   R NA V + +++L  +      S  F      A++  + +             +
Sbjct: 1   MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRV-------------L 60

Query: 61  LKTINCAGQHDLKY-LGGLAVTIYMEHKADFNTSL-QVFVFVAAEYETPKNSLNQISLWD 120
           +K +   G    K+ LG +   +       FN ++ Q+F+++ AEY+TP N LNQ+ LWD
Sbjct: 61  VKNVPDYGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWD 120

Query: 121 GIIPSKENAKFSIHTSN-KYRFIDQGSNLK-GKEFNLTLHWHVMPKTGKMFADKIVMTG- 180
            II   +NA       N KY F D G+ LK  +  +L L W+++P  G +    +  TG 
Sbjct: 121 KIILRGDNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNIIPNAGLL--PSVQATGK 174

Query: 181 --YRLPEDY 183
             ++ P DY
Sbjct: 181 HLFKFPADY 174

[Close]

BLAST of Clc03G18390 vs. ExPASy Swiss-Prot
Match: Q3SZU5 (Signal peptidase complex subunit 3 OS=Bos taurus OX=9913 GN=SPCS3 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-11
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 7   RANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESVLKTI-N 66
           RAN+L  F+++++  +      +  F   S    + V  I             +LK + +
Sbjct: 7   RANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRI-------------MLKNVED 66

Query: 67  CAGQHDLKYLGGLA--VTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGIIPS 126
             G  +   LG +   +T  +E+  D+N   Q+F++++AEY T  N+LNQ+ LWD I+  
Sbjct: 67  FTGPRERSDLGFITFDITADLENIFDWNVK-QLFLYLSAEYSTKNNALNQVVLWDKIVLR 126

Query: 127 KENAKFSI-HTSNKYRFIDQGSNLKG-KEFNLTLHWHVMPKTG 165
            +N K  +     KY F D G+ LKG +   LTL W+V+P  G
Sbjct: 127 GDNPKLLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAG 155

[Close]

BLAST of Clc03G18390 vs. ExPASy TrEMBL
Match: A0A5D3CE33 (Signal peptidase complex subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003740 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 150/183 (81.97%), Postives = 156/183 (85.25%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANAL TFAVTILVIMCAMASFSD FN+PSPTA V+VLNINWFQKQLHGNDE V
Sbjct: 1   MHSFGYRANALATFAVTILVIMCAMASFSDTFNTPSPTARVEVLNINWFQKQLHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N +   DL+ L              +NT  QVFVFVAAEYETPKNSLNQISLWDGI
Sbjct: 61  SMTLNISA--DLQSL------------FTWNTK-QVFVFVAAEYETPKNSLNQISLWDGI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE
Sbjct: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 167

Query: 181 DYR 184
           DYR
Sbjct: 181 DYR 167

[Close]

BLAST of Clc03G18390 vs. ExPASy TrEMBL
Match: A0A1S3BQR8 (Signal peptidase complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103492185 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 150/183 (81.97%), Postives = 156/183 (85.25%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANAL TFAVTILVIMCAMASFSD FN+PSPTA V+VLNINWFQKQLHGNDE V
Sbjct: 1   MHSFGYRANALATFAVTILVIMCAMASFSDTFNTPSPTARVEVLNINWFQKQLHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N +   DL+ L              +NT  QVFVFVAAEYETPKNSLNQISLWDGI
Sbjct: 61  SMTLNISA--DLQSL------------FTWNTK-QVFVFVAAEYETPKNSLNQISLWDGI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE
Sbjct: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 167

Query: 181 DYR 184
           DYR
Sbjct: 181 DYR 167

[Close]

BLAST of Clc03G18390 vs. ExPASy TrEMBL
Match: A0A6J1BP73 (Signal peptidase complex subunit 3 OS=Momordica charantia OX=3673 GN=LOC111004516 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.2e-71
Identity = 141/183 (77.05%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANA+VTFAVTIL IMCAMASFSDNFNSPSPTA +QVLNI WFQKQLHGNDE V
Sbjct: 1   MHSFGYRANAVVTFAVTILAIMCAMASFSDNFNSPSPTAHIQVLNIKWFQKQLHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N              ++  M+    +NT  QVFVFVAAEYETPKNSLNQISLWD I
Sbjct: 61  SMTLN--------------ISADMQSLFTWNTK-QVFVFVAAEYETPKNSLNQISLWDAI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSKENA+FSIHT NKYRFIDQGSNL+GKEFN+TLHWHVMPKTGKMFADKIVM+GYRLPE
Sbjct: 121 IPSKENARFSIHTVNKYRFIDQGSNLRGKEFNMTLHWHVMPKTGKMFADKIVMSGYRLPE 167

Query: 181 DYR 184
           +YR
Sbjct: 181 EYR 167

[Close]

BLAST of Clc03G18390 vs. ExPASy TrEMBL
Match: A0A6J1HY85 (Signal peptidase complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111467933 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.5e-71
Identity = 143/183 (78.14%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANALVTFAVTIL IMC MASFSDNFNSPSPTA VQVL+IN FQKQ+HGNDE V
Sbjct: 1   MHSFGYRANALVTFAVTILAIMCTMASFSDNFNSPSPTARVQVLSINRFQKQIHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N              +++ ++    +NT  QVFVFVAAEYETPKNSLNQISLWDGI
Sbjct: 61  TMTLN--------------ISMDLQSLFTWNTK-QVFVFVAAEYETPKNSLNQISLWDGI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSKENAKFSIHTSNKYRFIDQGSNL+GKEFNLTLHWHVMPKTGKM ADKIVMTGYRLP 
Sbjct: 121 IPSKENAKFSIHTSNKYRFIDQGSNLRGKEFNLTLHWHVMPKTGKMSADKIVMTGYRLPV 167

Query: 181 DYR 184
           DYR
Sbjct: 181 DYR 167

[Close]

BLAST of Clc03G18390 vs. ExPASy TrEMBL
Match: A0A6J1HAK0 (Signal peptidase complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111462065 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.5e-71
Identity = 143/183 (78.14%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANALVTFAVTIL IMC MASFSDNFNSPSPTA VQVL+IN FQKQ+HGNDE V
Sbjct: 1   MHSFGYRANALVTFAVTILAIMCTMASFSDNFNSPSPTARVQVLSINRFQKQIHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N              +++ ++    +NT  QVFVFVAAEYETPKNSLNQISLWDGI
Sbjct: 61  TMTLN--------------ISMDLQSLFTWNTK-QVFVFVAAEYETPKNSLNQISLWDGI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IPSKENAKFSIHTSNKYRFIDQGSNL+GKEFNLTLHWHVMPKTGKM ADKIVMTGYRLP 
Sbjct: 121 IPSKENAKFSIHTSNKYRFIDQGSNLRGKEFNLTLHWHVMPKTGKMSADKIVMTGYRLPV 167

Query: 181 DYR 184
           DYR
Sbjct: 181 DYR 167

[Close]

BLAST of Clc03G18390 vs. TAIR 10
Match: AT5G27430.1 (Signal peptidase subunit )

HSP 1 Score: 245.4 bits (625), Expect = 3.7e-65
Identity = 123/183 (67.21%), Postives = 143/183 (78.14%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MHSFGYRANAL+TFAVTIL  +CA+ASFSDNF++ +P+A +Q+LNINWFQKQ HGNDE V
Sbjct: 1   MHSFGYRANALLTFAVTILAFICAIASFSDNFSNQNPSAQIQILNINWFQKQPHGNDE-V 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
             T+N              +T  ++    +NT  QVF FVAAEYET KN+LNQ+SLWD I
Sbjct: 61  SLTLN--------------ITADLQSLFTWNTK-QVFAFVAAEYETSKNALNQVSLWDAI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IP KE+AKF I  SNKYRFIDQG NL+GK+FNLTLHWHVMPKTGKMFADKIVM+GYRLP 
Sbjct: 121 IPEKEHAKFWIQISNKYRFIDQGHNLRGKDFNLTLHWHVMPKTGKMFADKIVMSGYRLPN 167

Query: 181 DYR 184
            YR
Sbjct: 181 AYR 167

[Close]

BLAST of Clc03G18390 vs. TAIR 10
Match: AT3G05230.1 (Signal peptidase subunit )

HSP 1 Score: 235.7 bits (600), Expect = 2.9e-62
Identity = 117/183 (63.93%), Postives = 140/183 (76.50%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MH+FGYRANAL+TFAVT L  +CA+ASFSD F++ +P+A +Q+LNIN F+KQ HGNDE  
Sbjct: 1   MHTFGYRANALLTFAVTALAFICAIASFSDKFSNQNPSAEIQILNINRFKKQSHGNDEVS 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
           L                L ++  ++    +NT  QVFVFVAAEYETPKNSLNQ+SLWD I
Sbjct: 61  LT---------------LDISADLQSLFTWNTK-QVFVFVAAEYETPKNSLNQVSLWDAI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQGSNLKGKEFNLTLHWHVMPKTGKMFADKIVMTGYRLPE 180
           IP+KE+AKF I  SNKYRFIDQG NL+GK+FNLTLHWHVMPKTGKMFADKIV+ GY LP+
Sbjct: 121 IPAKEHAKFRIQVSNKYRFIDQGQNLRGKDFNLTLHWHVMPKTGKMFADKIVLPGYSLPD 167

Query: 181 DYR 184
            YR
Sbjct: 181 AYR 167

[Close]

BLAST of Clc03G18390 vs. TAIR 10
Match: AT3G05230.2 (Signal peptidase subunit )

HSP 1 Score: 161.4 bits (407), Expect = 6.9e-40
Identity = 84/142 (59.15%), Postives = 103/142 (72.54%), Query Frame = 0


Query: 1   MHSFGYRANALVTFAVTILVIMCAMASFSDNFNSPSPTASVQVLNINWFQKQLHGNDESV 60
           MH+FGYRANAL+TFAVT L  +CA+ASFSD F++ +P+A +Q+LNIN F+KQ HGNDE  
Sbjct: 1   MHTFGYRANALLTFAVTALAFICAIASFSDKFSNQNPSAEIQILNINRFKKQSHGNDEVS 60

Query: 61  LKTINCAGQHDLKYLGGLAVTIYMEHKADFNTSLQVFVFVAAEYETPKNSLNQISLWDGI 120
           L                L ++  ++    +NT  QVFVFVAAEYETPKNSLNQ+SLWD I
Sbjct: 61  LT---------------LDISADLQSLFTWNTK-QVFVFVAAEYETPKNSLNQVSLWDAI 120

Query: 121 IPSKENAKFSIHTSNKYRFIDQ 143
           IP+KE+AKF I  SNKYRFIDQ
Sbjct: 121 IPAKEHAKFRIQVSNKYRFIDQ 126

The following BLAST results are available for this feature:

BLAST of Clc03G18390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878575.1	2.1e-75	80.87	signal peptidase complex subunit 3B-like [Benincasa hispida]	[more]
XP_008450666.1	2.4e-74	81.97	PREDICTED: signal peptidase complex subunit 3B-like [Cucumis melo] >TYK10227.1 s...	[more]
XP_004135628.1	1.2e-73	80.87	signal peptidase complex subunit 3B [Cucumis sativus] >KAE8653375.1 hypothetical...	[more]
XP_022131260.1	2.5e-71	77.05	signal peptidase complex subunit 3B-like [Momordica charantia]	[more]
XP_022961511.1	9.3e-71	78.14	signal peptidase complex subunit 3B-like [Cucurbita moschata] >XP_022968805.1 si...	[more]

BLAST of Clc03G18390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q53YF3	5.1e-64	67.21	Signal peptidase complex subunit 3B OS=Arabidopsis thaliana OX=3702 GN=At5g27430...	[more]
Q9MA96	4.1e-61	63.93	Signal peptidase complex subunit 3A OS=Arabidopsis thaliana OX=3702 GN=At3g05230...	[more]
Q9LGB4	7.5e-31	40.11	Probable signal peptidase complex subunit 3 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9VCA9	1.3e-11	28.04	Signal peptidase complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=Spase22...	[more]
Q3SZU5	3.0e-11	30.06	Signal peptidase complex subunit 3 OS=Bos taurus OX=9913 GN=SPCS3 PE=2 SV=1	[more]

BLAST of Clc03G18390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CE33	1.1e-74	81.97	Signal peptidase complex subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BQR8	1.1e-74	81.97	Signal peptidase complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103492185 PE=3 ...	[more]
A0A6J1BP73	1.2e-71	77.05	Signal peptidase complex subunit 3 OS=Momordica charantia OX=3673 GN=LOC11100451...	[more]
A0A6J1HY85	4.5e-71	78.14	Signal peptidase complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111467933 P...	[more]
A0A6J1HAK0	4.5e-71	78.14	Signal peptidase complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111462065...	[more]

BLAST of Clc03G18390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27430.1	3.7e-65	67.21	Signal peptidase subunit	[more]
AT3G05230.1	2.9e-62	63.93	Signal peptidase subunit	[more]
AT3G05230.2	6.9e-40	59.15	Signal peptidase subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007653	Signal peptidase complex subunit 3	PFAM	PF04573	SPC22	coord: 6..180 e-value: 2.6E-37 score: 127.9
IPR007653	Signal peptidase complex subunit 3	PIRSF	PIRSF016089	SPC3	coord: 80..183 e-value: 5.7E-23 score: 79.2 coord: 1..67 e-value: 0.0051 score: 14.2
IPR007653	Signal peptidase complex subunit 3	PANTHER	PTHR12804	MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23	coord: 1..183
None	No IPR available	PANTHER	PTHR12804:SF11	SIGNAL PEPTIDASE COMPLEX SUBUNIT 3	coord: 1..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G18390.2	Clc03G18390.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045047	protein targeting to ER
biological_process	GO:0006465	signal peptide processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005787	signal peptidase complex
molecular_function	GO:0004252	serine-type endopeptidase activity