Clc03G18030 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G18030
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Defensin-like family protein, putative
Location	ClcChr03: 30386227 .. 30386760 (-)
RNA-Seq Expression	Clc03G18030
Synteny	Clc03G18030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGAATTACAGGGAGTTTGAATACAAGTGCTCAATTGTGTTGCAACAATCATCCAAAGTTGGGGGCTTGCAAGCCTGGAGTAGATGATCAGGGAGATGGAAAGTGTTGGCTTCACTGCATTTCTGGTTGTGAGAAAGGTGGATTTTGTAAACAAGTTGGGAATGGACATGTTTGTCATTGTTATTGTTGATTTCATGTATTTGCTTCCTTTTCAAGTACCTTTGGCTCTATGTATGCAATGTCATGCATTGCTCCCTATAATAATTGATGTCTTTAATAATAAGAATCAAATAATATAATAAGAATGAAATGACCAATATAATGTTATTTTCCTCTATGCTAAAATAAAATAACATTAAAGGAAATTAATTATGAAAGAAACACTGAAATAGTAAGGATTATTTCCAACTCTTTTAAAATTTCACATCATTCTTTGGATAGGGACTCCATAAACAAGAAATTCATGAAGATGGAAATACAATCCAATCATCTCTTTTTCCTTTTCTTTGTCTAGATGACTGAACCATAA

mRNA sequence

ATGGGTAGAATTACAGGGAGTTTGAATACAAGTGCTCAATTGTGTTGCAACAATCATCCAAAGTTGGGGGCTTGCAAGCCTGGAGTAGATGATCAGGGAGATGGAAAGTGTTGGCTTCACTGCATTTCTGGTTGTGAGAAAGGTGGATTTTGTAAACAAGTTGGGAATGGACATATGACTGAACCATAA

Coding sequence (CDS)

ATGGGTAGAATTACAGGGAGTTTGAATACAAGTGCTCAATTGTGTTGCAACAATCATCCAAAGTTGGGGGCTTGCAAGCCTGGAGTAGATGATCAGGGAGATGGAAAGTGTTGGCTTCACTGCATTTCTGGTTGTGAGAAAGGTGGATTTTGTAAACAAGTTGGGAATGGACATATGACTGAACCATAA

Protein sequence

MGRITGSLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGNGHMTEP

Homology

[Close]

BLAST of Clc03G18030 vs. NCBI nr
Match: TYK10190.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 6.3e-19
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 5  TGSLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQV 55
          +GS NT+AQLCCNNHP+LG+C+PGVDD  DGKCWLHCI+GCEKGGFCKQ+
Sbjct: 20 SGSKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGCEKGGFCKQL 69

[Close]

BLAST of Clc03G18030 vs. NCBI nr
Match: TYK10191.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 8.2e-19
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 7   SLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGN 57
           S NT+AQLCCNNHP+LG+C+PGVDD  DGKCWLHCI+GCEKGGFCKQ+ N
Sbjct: 74  SKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGCEKGGFCKQLSN 123

[Close]

BLAST of Clc03G18030 vs. NCBI nr
Match: KGN66136.1 (hypothetical protein Csa_007074 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 9.0e-18
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 5  TGSLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGN 57
          +GS+NT+AQLCCNNHP+LG C+ GVDD  DGKCWLHCI+GCEKGGFCK + +
Sbjct: 20 SGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSD 71

[Close]

BLAST of Clc03G18030 vs. NCBI nr
Match: KGN66133.1 (hypothetical protein Csa_007601 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-17
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 6  GSLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGNGHM 60
          GS+NT+AQLCCNNH +LG+C PGVDD  DGKCW HCI GCE+GGFCK++  GH+
Sbjct: 21 GSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKLWYGHV 74

[Close]

BLAST of Clc03G18030 vs. NCBI nr
Match: TYK10192.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 5.0e-16
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 7  SLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGNGHM 60
          SLNT+AQLCC NHP+ GAC PGVDD  DG+CW  CI GCEKGGFCK+VG  H+
Sbjct: 38 SLNTNAQLCCINHPEWGACWPGVDDATDGRCWRRCIGGCEKGGFCKRVGRKHV 90

[Close]

BLAST of Clc03G18030 vs. ExPASy Swiss-Prot
Match: Q2V2S1 (Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-11
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 14 LCCNNHPKLGACKPGVDD--QGDGKCWLHCISGCEKGGFCKQVGNGHM 60
          +CC  HP +G C PG+DD  + DGKCW  CI GCE GGFCK   + H+
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCKLFEHKHI 83

[Close]

BLAST of Clc03G18030 vs. ExPASy Swiss-Prot
Match: P0CAX9 (Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.0e-11
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 14 LCCNNHPKLGACKPGVDDQGD--GKCWLHCISGCEKGGFCKQVGNGHM 60
          +CC  HP +G C P +DD  +  GKCW  CI GCE GGFCK  G+ H+
Sbjct: 40 ICCKEHPSVGRCLPNIDDSAEKGGKCWKFCIEGCETGGFCKLFGHKHI 87

[Close]

BLAST of Clc03G18030 vs. ExPASy Swiss-Prot
Match: Q2V391 (Defensin-like protein 22 OS=Arabidopsis thaliana OX=3702 GN=At5g08315 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-07
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 7  SLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCE--KGGFCKQVGNG 58
          ++     LCCNNHPK G C    DDQ   +C   C++GC+  KGG+CK + +G
Sbjct: 26 NVENGGSLCCNNHPKFGKCNTKNDDQ---RCNSWCLNGCDNGKGGYCKSMSHG 75

[Close]

BLAST of Clc03G18030 vs. ExPASy Swiss-Prot
Match: Q2V392 (Putative defensin-like protein 25 OS=Arabidopsis thaliana OX=3702 GN=At5g08055 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.0e-05
Identity = 20/51 (39.22%), Postives = 28/51 (54.90%), Query Frame = 0


Query: 7  SLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGNG 58
          ++ +   LCCNNHPK G C    D+Q   + W H   G  KG +CK + +G
Sbjct: 25 NVESGGSLCCNNHPKFGKCNTNNDNQRCNR-WCHNGCGNGKGDYCKAMSHG 74

[Close]

BLAST of Clc03G18030 vs. ExPASy Swiss-Prot
Match: Q2V364 (Putative defensin-like protein 23 OS=Arabidopsis thaliana OX=3702 GN=At5g19315 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.1e-05
Identity = 21/50 (42.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 10 TSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCE--KGGFCKQVGNG 58
          + + LCCN H K GAC    D +   +C   C+ GC+  KGGFCK+   G
Sbjct: 26 SGSSLCCNTHAKFGACNTYQDRK---RCNKWCLDGCDNKKGGFCKRFAGG 72

[Close]

BLAST of Clc03G18030 vs. ExPASy TrEMBL
Match: A0A5D3CFQ3 (Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003350 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 5  TGSLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQV 55
          +GS NT+AQLCCNNHP+LG+C+PGVDD  DGKCWLHCI+GCEKGGFCKQ+
Sbjct: 20 SGSKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGCEKGGFCKQL 69

[Close]

BLAST of Clc03G18030 vs. ExPASy TrEMBL
Match: A0A5D3CEJ1 (Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003360 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 7   SLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGN 57
           S NT+AQLCCNNHP+LG+C+PGVDD  DGKCWLHCI+GCEKGGFCKQ+ N
Sbjct: 74  SKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGCEKGGFCKQLSN 123

[Close]

BLAST of Clc03G18030 vs. ExPASy TrEMBL
Match: A0A0A0M1N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-18
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 5  TGSLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGN 57
          +GS+NT+AQLCCNNHP+LG C+ GVDD  DGKCWLHCI+GCEKGGFCK + +
Sbjct: 20 SGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSD 71

[Close]

BLAST of Clc03G18030 vs. ExPASy TrEMBL
Match: A0A0A0LYL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 5  TGSLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGNGHM 60
          +GSLNT+AQLCC NHP+ GACKPGVDD  DG+CWL CI GCEKGG CK+VG  H+
Sbjct: 20 SGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGCEKGGICKRVGKKHV 74

[Close]

BLAST of Clc03G18030 vs. ExPASy TrEMBL
Match: A0A0A0LWJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 6  GSLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGNGHM 60
          GS+NT+AQLCCNNH +LG+C PGVDD  DGKCW HCI GCE+GGFCK++  GH+
Sbjct: 21 GSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKLWYGHV 74

[Close]

BLAST of Clc03G18030 vs. TAIR 10
Match: AT5G52605.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-12
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 14 LCCNNHPKLGACKPGVDD--QGDGKCWLHCISGCEKGGFCKQVGNGHM 60
          +CC  HP +G C PG+DD  + DGKCW  CI GCE GGFCK   + H+
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCKLFEHKHI 83

[Close]

BLAST of Clc03G18030 vs. TAIR 10
Match: AT4G14276.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-12
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 14 LCCNNHPKLGACKPGVDDQGD--GKCWLHCISGCEKGGFCKQVGNGHM 60
          +CC  HP +G C P +DD  +  GKCW  CI GCE GGFCK  G+ H+
Sbjct: 40 ICCKEHPSVGRCLPNIDDSAEKGGKCWKFCIEGCETGGFCKLFGHKHI 87

[Close]

BLAST of Clc03G18030 vs. TAIR 10
Match: AT5G08315.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 7  SLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCE--KGGFCKQVGNG 58
          ++     LCCNNHPK G C    DDQ   +C   C++GC+  KGG+CK + +G
Sbjct: 26 NVENGGSLCCNNHPKFGKCNTKNDDQ---RCNSWCLNGCDNGKGGYCKSMSHG 75

[Close]

BLAST of Clc03G18030 vs. TAIR 10
Match: AT5G08055.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 47.4 bits (111), Expect = 5.0e-06
Identity = 20/51 (39.22%), Postives = 28/51 (54.90%), Query Frame = 0


Query: 7  SLNTSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCEKGGFCKQVGNG 58
          ++ +   LCCNNHPK G C    D+Q   + W H   G  KG +CK + +G
Sbjct: 25 NVESGGSLCCNNHPKFGKCNTNNDNQRCNR-WCHNGCGNGKGDYCKAMSHG 74

[Close]

BLAST of Clc03G18030 vs. TAIR 10
Match: AT5G19315.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 47.0 bits (110), Expect = 6.5e-06
Identity = 21/50 (42.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 10 TSAQLCCNNHPKLGACKPGVDDQGDGKCWLHCISGCE--KGGFCKQVGNG 58
          + + LCCN H K GAC    D +   +C   C+ GC+  KGGFCK+   G
Sbjct: 26 SGSSLCCNTHAKFGACNTYQDRK---RCNKWCLDGCDNKKGGFCKRFAGG 72

The following BLAST results are available for this feature:

BLAST of Clc03G18030 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10190.1	6.3e-19	80.00	putative defensin-like protein 20 [Cucumis melo var. makuwa]	[more]
TYK10191.1	8.2e-19	80.00	putative defensin-like protein 20 [Cucumis melo var. makuwa]	[more]
KGN66136.1	9.0e-18	73.08	hypothetical protein Csa_007074 [Cucumis sativus]	[more]
KGN66133.1	5.9e-17	70.37	hypothetical protein Csa_007601 [Cucumis sativus]	[more]
TYK10192.1	5.0e-16	71.70	putative defensin-like protein 20 [Cucumis melo var. makuwa]	[more]

BLAST of Clc03G18030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V2S1	2.9e-11	54.17	Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 P...	[more]
P0CAX9	5.0e-11	52.08	Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1	[more]
Q2V391	3.3e-07	43.40	Defensin-like protein 22 OS=Arabidopsis thaliana OX=3702 GN=At5g08315 PE=2 SV=1	[more]
Q2V392	7.0e-05	39.22	Putative defensin-like protein 25 OS=Arabidopsis thaliana OX=3702 GN=At5g08055 P...	[more]
Q2V364	9.1e-05	42.00	Putative defensin-like protein 23 OS=Arabidopsis thaliana OX=3702 GN=At5g19315 P...	[more]

BLAST of Clc03G18030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFQ3	3.0e-19	80.00	Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CEJ1	4.0e-19	80.00	Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0M1N0	4.4e-18	73.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=3 SV=1	[more]
A0A0A0LYL5	5.7e-18	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=3 SV=1	[more]
A0A0A0LWJ9	2.8e-17	70.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=3 SV=1	[more]

BLAST of Clc03G18030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52605.1	2.1e-12	54.17	Defensin-like (DEFL) family protein	[more]
AT4G14276.1	3.5e-12	52.08	Defensin-like (DEFL) family protein	[more]
AT5G08315.1	2.4e-08	43.40	Defensin-like (DEFL) family protein	[more]
AT5G08055.1	5.0e-06	39.22	Defensin-like (DEFL) family protein	[more]
AT5G19315.1	6.5e-06	42.00	Defensin-like (DEFL) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022618	Defensin-like protein 20-27	PFAM	PF10868	Defensin_like	coord: 14..59 e-value: 2.2E-11 score: 44.3
IPR022618	Defensin-like protein 20-27	PANTHER	PTHR34453	DEFENSIN-LIKE (DEFL) FAMILY PROTEIN-RELATED	coord: 9..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G18030.2	Clc03G18030.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005576	extracellular region