Clc03G16660 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G16660
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type E3 ubiquitin transferase
Location	ClcChr03: 28960018 .. 28960551 (+)
RNA-Seq Expression	Clc03G16660
Synteny	Clc03G16660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATTCTTCTTCAACCTCTTTTGCTCAGCCAACGCCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGCCTTGTGGTCATCGGAACGGCGGCGATTGTGTTGGTTCTTTACAATTTCATCATTATCAAGTGGTGCTCTGACAACCGCCACCGCCGTGCTTCCCCGGCGTTGGCTGGAAGTTATGCAGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCGTTGTGCAGCTTCAAATTCAAGAAGGGGTTCACGGCGGCGGCAGCGGCGGAAGAAAATGGGAATGGGAATGAATGTGCAGTTTGTTTGTCGGCGTTTGAGGATGGGGAAGAGGTTAAGAAACTGCCGAGATGCACACATATGTTTCATGCTTCTTGTATAGACATGTGGCTTTACTCTCACTCCGATTGCCCTCTCTGCCGCACTCCGGTGGTGGCGCCGGGGCTGAGCCAACACCAAACCACGGCGGAGCAACAGGAGAATTCAGGGCATGGTTTGTTGGATTCCGGCGAGTTGGTTTGA

mRNA sequence

ATGAGTGATTCTTCTTCAACCTCTTTTGCTCAGCCAACGCCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGCCTTGTGGTCATCGGAACGGCGGCGATTGTGTTGGTTCTTTACAATTTCATCATTATCAAGTGGTGCTCTGACAACCGCCACCGCCGTGCTTCCCCGGCGTTGGCTGGAAGTTATGCAGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCGTTGTGCAGCTTCAAATTCAAGAAGGGGTTCACGGCGGCGGCAGCGGCGGAAGAAAATGGGAATGGGAATGAATGTGCAGTTTGTTTGTCGGCGTTTGAGGATGGGGAAGAGGTTAAGAAACTGCCGAGATGCACACATATGTTTCATGCTTCTTGTATAGACATGTGGCTTTACTCTCACTCCGATTGCCCTCTCTGCCGCACTCCGGTGGTGGCGCCGGGGCTGAGCCAACACCAAACCACGGCGGAGCAACAGGAGAATTCAGGGCATGGTTTGTTGGATTCCGGCGAGTTGGTTTGA

Coding sequence (CDS)

ATGAGTGATTCTTCTTCAACCTCTTTTGCTCAGCCAACGCCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGCCTTGTGGTCATCGGAACGGCGGCGATTGTGTTGGTTCTTTACAATTTCATCATTATCAAGTGGTGCTCTGACAACCGCCACCGCCGTGCTTCCCCGGCGTTGGCTGGAAGTTATGCAGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCGTTGTGCAGCTTCAAATTCAAGAAGGGGTTCACGGCGGCGGCAGCGGCGGAAGAAAATGGGAATGGGAATGAATGTGCAGTTTGTTTGTCGGCGTTTGAGGATGGGGAAGAGGTTAAGAAACTGCCGAGATGCACACATATGTTTCATGCTTCTTGTATAGACATGTGGCTTTACTCTCACTCCGATTGCCCTCTCTGCCGCACTCCGGTGGTGGCGCCGGGGCTGAGCCAACACCAAACCACGGCGGAGCAACAGGAGAATTCAGGGCATGGTTTGTTGGATTCCGGCGAGTTGGTTTGA

Protein sequence

MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPALAGSYAEMMNSSRSFQSSLCSFKFKKGFTAAAAAEENGNGNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQTTAEQQENSGHGLLDSGELV

Homology

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BLAST of Clc03G16660 vs. NCBI nr
Match: XP_038879803.1 (RING-H2 finger protein ATL39-like [Benincasa hispida])

HSP 1 Score: 328.6 bits (841), Expect = 3.4e-86
Identity = 162/178 (91.01%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPA 60
           MSDSSSTSFAQPTPHPAKSSLPMLYYGLVV+GTAAIVLVLYNFI+IKWCSDNRHRRASPA
Sbjct: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSSLCSFKFKKGFT-AAAAAEENGNGNECAVCLSAFEDGEEVKKL 120
           LAGSYAEMMNSSRSF SSLCSFKFKKG T AAAAAEE G GNECAVCLSAFEDG+EVKKL
Sbjct: 61  LAGSYAEMMNSSRSFHSSLCSFKFKKGSTVAAAAAEEEGYGNECAVCLSAFEDGDEVKKL 120

Query: 121 PRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQTTAEQQENSGHGLLDSGELV 178
           PRCTHMFHASCIDMWL+SHSDCPLCR PVVA GLSQHQ  AEQ+ENSGHGLL+SG+LV
Sbjct: 121 PRCTHMFHASCIDMWLFSHSDCPLCRAPVVAQGLSQHQAMAEQEENSGHGLLESGDLV 178

[Close]

BLAST of Clc03G16660 vs. NCBI nr
Match: XP_022960602.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita moschata])

HSP 1 Score: 294.3 bits (752), Expect = 7.1e-76
Identity = 148/181 (81.77%), Postives = 155/181 (85.64%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPA 60
           MSDS+S  FAQPT HPAKSSLPMLYYGLVVIGTAAIVLVLYNFI+I WCSDNR  RASPA
Sbjct: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFKFKKGFTAAAAAEENGNGNECAVCLSAFEDGEEV 120
           LAGSYAEM+NSSRS QSS    LCSFKFKKG  AAAAAEE GNGNEC VCLSAFE+GEEV
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEV 120

Query: 121 KKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQTTAEQQENSGHGLLDSGEL 178
           KKLPRC HMFHA CIDMWL+SH DCPLCR PV  PGLS+ QT AEQQ NSGHGL +SG L
Sbjct: 121 KKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESGGL 180

[Close]

BLAST of Clc03G16660 vs. NCBI nr
Match: KAG6590024.1 (RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023686.1 RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.3 bits (739), Expect = 2.3e-74
Identity = 148/183 (80.87%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPA 60
           MSDS+S  FAQPT HPAKSSLPMLYYGLVVIGTAAIVLVLYNFI+I WCSDNR  RASPA
Sbjct: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFKFKKGFTAA--AAAEENGNGNECAVCLSAFEDGE 120
           LAGSYAEM+NSSRS QSS    LCSFKFKKG  AA  AAAEE GNGNEC VCLSAFE+GE
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAATAAAEEEGNGNECVVCLSAFEEGE 120

Query: 121 EVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQTTAEQQENSGHGLLDSG 178
           EVKKLPRC HMFHA CIDMWL+SH DCPLCR PV  PGLS+ QT AEQQ NSGHGL +SG
Sbjct: 121 EVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESG 180

[Close]

BLAST of Clc03G16660 vs. NCBI nr
Match: XP_022987479.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita maxima])

HSP 1 Score: 288.1 bits (736), Expect = 5.1e-74
Identity = 146/181 (80.66%), Postives = 155/181 (85.64%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPA 60
           MSDS+S  F+QPT HPAKSSLPMLYYGLVVIGTAAIVLVLYNFI+I WCSDNR  RASPA
Sbjct: 1   MSDSASNHFSQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFKFKKGFTAAAAAEENGNGNECAVCLSAFEDGEEV 120
           LAGSYAEM+NSSRS QSS    LCSFKFKKG +AAAA EE GNGNEC VCLSAFE+GEEV
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKG-SAAAAVEEEGNGNECVVCLSAFEEGEEV 120

Query: 121 KKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQTTAEQQENSGHGLLDSGEL 178
           KKLPRC HMFHA CIDMWL+SH DCPLCR PV  PGLS+ QT AEQQ NSGHGL +SG L
Sbjct: 121 KKLPRCLHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESGGL 180

[Close]

BLAST of Clc03G16660 vs. NCBI nr
Match: XP_023516728.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 8.7e-74
Identity = 147/184 (79.89%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPA 60
           MSDS+S  FAQPT HPAKSSLPMLYYGLVVIGTAAIVLVLYNFI+I WCSDNR  RASPA
Sbjct: 1   MSDSASNYFAQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFKFKKGFTAAAAA---EENGNGNECAVCLSAFEDG 120
           LAG+YAEM+NSSRS QSS    LCSFKFKKG  AAAAA   EE GNGNEC VCLSAFE+G
Sbjct: 61  LAGNYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAAVVEEEGNGNECVVCLSAFEEG 120

Query: 121 EEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQTTAEQQENSGHGLLDS 178
           EEVKKLPRC HMFHA CIDMWL+SH DCPLCR PV  PGLS+ QT AEQQ NSGHGL +S
Sbjct: 121 EEVKKLPRCMHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTVAEQQGNSGHGLPES 180

[Close]

BLAST of Clc03G16660 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-17
Identity = 62/172 (36.05%), Postives = 78/172 (45.35%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYN--FIIIKWCSDNRHRRAS 60
           M +SSS+S   P   PA     M   G+  +    IV       F++++   D R R  +
Sbjct: 12  MDESSSSSSPSPVSAPA-GQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVT 71

Query: 61  PALAGSYAEMMNSSRSFQS----------------SLCSFKFKKGFTAAAA---AEENGN 120
                         R   S                SL    + +   AAAA    EE+ +
Sbjct: 72  TTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDD 131

Query: 121 GNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAP 152
           G ECAVCL+  EDGEE + LPRC H FHA C+DMWL SHS CPLCR  VV P
Sbjct: 132 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVP 182

[Close]

BLAST of Clc03G16660 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.0e-17
Identity = 60/180 (33.33%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 6   STSFAQPT-PHPAKS--SLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSD-------NRHR 65
           ST+F  P  P  + S  + P+L   ++ I   A +LV Y   +IK C +        R R
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 66  RAS---PALAGSYAEMMNS-SRSFQSSLCSFKFKKGFTAAAAAEENGNGNECAVCLSAFE 125
           R+S   P +  S  E+      S   ++  FKFKK    A   +++ N  EC+VCL+ F+
Sbjct: 83  RSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQ 142

Query: 126 DGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPG---LSQHQTTAEQQENSGH 169
           + E+++ +P C H+FH  CID+WL  +++CPLCRT V       L      +  +ENS H
Sbjct: 143 EDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPH 202

[Close]

BLAST of Clc03G16660 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-16
Identity = 58/170 (34.12%), Postives = 82/170 (48.24%), Query Frame = 0


Query: 8   SFAQPTPHP-------AKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWC----------- 67
           SF  P P P         +S P+L   ++ I   A +LV Y   +IK C           
Sbjct: 14  SFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGR 73

Query: 68  -SDNRHRRASPALAGSYAEMMNS---SRSFQSSLCSFKFKKG-------FTAAAAAEENG 127
            S +R RR        Y+  + S     S   ++  FKFKK        FT     EE  
Sbjct: 74  FSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEK 133

Query: 128 NGNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPV 149
              EC+VCLS F+D E+++ +P C+H+FH  CID+WL ++++CPLCRT V
Sbjct: 134 RSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of Clc03G16660 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-16
Identity = 64/185 (34.59%), Postives = 89/185 (48.11%), Query Frame = 0


Query: 3   DSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPAL- 62
           DSSS+S          SS   L   L+ I T+A++LV Y  +I K+C  +    +S  L 
Sbjct: 46  DSSSSS----------SSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLN 105

Query: 63  -----AGSYAEMMNSS-------RSFQSSLCSFKFKKGFTAAAAAEENGNGNECAVCLSA 122
                 G ++     S        S   S+  +K+K G       +   +G++C+VCLS 
Sbjct: 106 LNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSG-------DGFVDGSDCSVCLSE 165

Query: 123 FEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCR---TPVVAPGLSQHQTTA---EQQ 169
           FE+ E ++ LP+C H FH  CID WL SHS+CPLCR   T V  P  S  Q  +     Q
Sbjct: 166 FEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQ 213

[Close]

BLAST of Clc03G16660 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-14
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 78  SLCSFKFKKGFTAAAAAEENGNGNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYS 137
           SL    F    + + AA E G+  ECA+CL+ F DGEE++ LP C H FH  CID WL S
Sbjct: 77  SLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVS 136

Query: 138 HSDCPLCR---TPVVAPGLSQHQTTAEQQENS 167
            S CP CR   TPV       H +TAE ++ +
Sbjct: 137 RSSCPSCRRILTPVRCDRCG-HASTAEMKDQA 167

[Close]

BLAST of Clc03G16660 vs. ExPASy TrEMBL
Match: A0A6J1H7W2 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461337 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.5e-76
Identity = 148/181 (81.77%), Postives = 155/181 (85.64%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPA 60
           MSDS+S  FAQPT HPAKSSLPMLYYGLVVIGTAAIVLVLYNFI+I WCSDNR  RASPA
Sbjct: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFKFKKGFTAAAAAEENGNGNECAVCLSAFEDGEEV 120
           LAGSYAEM+NSSRS QSS    LCSFKFKKG  AAAAAEE GNGNEC VCLSAFE+GEEV
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAEEEGNGNECVVCLSAFEEGEEV 120

Query: 121 KKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQTTAEQQENSGHGLLDSGEL 178
           KKLPRC HMFHA CIDMWL+SH DCPLCR PV  PGLS+ QT AEQQ NSGHGL +SG L
Sbjct: 121 KKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESGGL 180

[Close]

BLAST of Clc03G16660 vs. ExPASy TrEMBL
Match: A0A6J1JJ05 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.5e-74
Identity = 146/181 (80.66%), Postives = 155/181 (85.64%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPA 60
           MSDS+S  F+QPT HPAKSSLPMLYYGLVVIGTAAIVLVLYNFI+I WCSDNR  RASPA
Sbjct: 1   MSDSASNHFSQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFKFKKGFTAAAAAEENGNGNECAVCLSAFEDGEEV 120
           LAGSYAEM+NSSRS QSS    LCSFKFKKG +AAAA EE GNGNEC VCLSAFE+GEEV
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKG-SAAAAVEEEGNGNECVVCLSAFEEGEEV 120

Query: 121 KKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQTTAEQQENSGHGLLDSGEL 178
           KKLPRC HMFHA CIDMWL+SH DCPLCR PV  PGLS+ QT AEQQ NSGHGL +SG L
Sbjct: 121 KKLPRCLHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESGGL 180

[Close]

BLAST of Clc03G16660 vs. ExPASy TrEMBL
Match: A0A6J1HZG2 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467629 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 147/186 (79.03%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPA 60
           M DS+ST  AQPT HPAKSSLPMLYYGLVVIGTA IVLVLYN IIIKWCSDN H +ASPA
Sbjct: 1   MGDSASTFIAQPTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFKFKKGFTAAAAA--EENGNGNECAVCLSAFEDGE 120
           LAGSYAEM+NSSRSFQSS    L SFKFKKG TA A A  EE G GNECAVCLSAFEDGE
Sbjct: 61  LAGSYAEMVNSSRSFQSSNRNLLSSFKFKKGSTAKATATIEEEGIGNECAVCLSAFEDGE 120

Query: 121 EVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQT---TAEQQENSGHGLL 178
           EVKKLPRCTHMFHA CIDMWLYSHSDCPLCR P +AP L Q  T    AEQQ NSGHGLL
Sbjct: 121 EVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPAMAPALCQRHTAEDAAEQQVNSGHGLL 180

[Close]

BLAST of Clc03G16660 vs. ExPASy TrEMBL
Match: A0A6J1D0Z7 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111016600 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.2e-70
Identity = 145/182 (79.67%), Postives = 154/182 (84.62%), Query Frame = 0


Query: 2   SDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPAL 61
           S SSST F QPTPHPAKSSLPMLYYGLVV+GTAAIVLV+YNFI+I+WCSD R  R SP +
Sbjct: 4   SYSSSTPFTQPTPHPAKSSLPMLYYGLVVVGTAAIVLVVYNFIVIRWCSD-RRGRGSPGM 63

Query: 62  AGSYAEMMNSSRSFQSS----LCSFKFKKGFTAAAA-AEENGNGNECAVCLSAFEDGEEV 121
           A SYAEMM+SS SFQSS    L SF+FKKG  AAAA AEE GNG ECAVCLSAFEDGEEV
Sbjct: 64  ARSYAEMMSSSGSFQSSSRNLLSSFRFKKGTKAAAATAEEEGNGLECAVCLSAFEDGEEV 123

Query: 122 KKLPRCTHMFHASCIDMWLYSHSDCPLCRTPV-VAPGLSQHQTTAEQQENSGHGLLDSGE 178
           KKLPRCTHMFHA CIDMWLYSHSDCPLCR PV +APGL QH T AEQ ENSGHGLL+SG 
Sbjct: 124 KKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVALAPGLCQHHTAAEQPENSGHGLLESGG 183

[Close]

BLAST of Clc03G16660 vs. ExPASy TrEMBL
Match: A0A5A7UKT6 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001780 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 138/173 (79.77%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPA 60
           MSDSS++     TPHPAKSSLPMLYYGLVV+GTAAIVLVLYNFI+IKWCSD+RHRR    
Sbjct: 1   MSDSSTS-----TPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDSRHRR---R 60

Query: 61  LAGSYAEMMNSSRSFQSSLCSFKFKKGFTAAAAAEENGNGNECAVCLSAFEDGEEVKKLP 120
           +A SY EMMNSSRSFQSSL SFKFKK   A A AEE GNGNECAVCLSAFEDGEEVKKLP
Sbjct: 61  MAVSYEEMMNSSRSFQSSLSSFKFKKVAAATATAEE-GNGNECAVCLSAFEDGEEVKKLP 120

Query: 121 RCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQ-TTAEQQENSGHGLLD 173
           RCTH FHASCIDMWLYSHSDCPLCR PV  PG+S+H+ TTAEQ ENSGH LL+
Sbjct: 121 RCTHTFHASCIDMWLYSHSDCPLCRAPVAVPGVSRHETTTAEQDENSGHVLLE 164

[Close]

BLAST of Clc03G16660 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-18
Identity = 60/180 (33.33%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 6   STSFAQPT-PHPAKS--SLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSD-------NRHR 65
           ST+F  P  P  + S  + P+L   ++ I   A +LV Y   +IK C +        R R
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 66  RAS---PALAGSYAEMMNS-SRSFQSSLCSFKFKKGFTAAAAAEENGNGNECAVCLSAFE 125
           R+S   P +  S  E+      S   ++  FKFKK    A   +++ N  EC+VCL+ F+
Sbjct: 83  RSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQ 142

Query: 126 DGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPG---LSQHQTTAEQQENSGH 169
           + E+++ +P C H+FH  CID+WL  +++CPLCRT V       L      +  +ENS H
Sbjct: 143 EDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPH 202

[Close]

BLAST of Clc03G16660 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-17
Identity = 58/170 (34.12%), Postives = 82/170 (48.24%), Query Frame = 0


Query: 8   SFAQPTPHP-------AKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWC----------- 67
           SF  P P P         +S P+L   ++ I   A +LV Y   +IK C           
Sbjct: 14  SFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGR 73

Query: 68  -SDNRHRRASPALAGSYAEMMNS---SRSFQSSLCSFKFKKG-------FTAAAAAEENG 127
            S +R RR        Y+  + S     S   ++  FKFKK        FT     EE  
Sbjct: 74  FSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEK 133

Query: 128 NGNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPV 149
              EC+VCLS F+D E+++ +P C+H+FH  CID+WL ++++CPLCRT V
Sbjct: 134 RSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of Clc03G16660 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-17
Identity = 64/185 (34.59%), Postives = 89/185 (48.11%), Query Frame = 0


Query: 3   DSSSTSFAQPTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPAL- 62
           DSSS+S          SS   L   L+ I T+A++LV Y  +I K+C  +    +S  L 
Sbjct: 46  DSSSSS----------SSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLN 105

Query: 63  -----AGSYAEMMNSS-------RSFQSSLCSFKFKKGFTAAAAAEENGNGNECAVCLSA 122
                 G ++     S        S   S+  +K+K G       +   +G++C+VCLS 
Sbjct: 106 LNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSG-------DGFVDGSDCSVCLSE 165

Query: 123 FEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCR---TPVVAPGLSQHQTTA---EQQ 169
           FE+ E ++ LP+C H FH  CID WL SHS+CPLCR   T V  P  S  Q  +     Q
Sbjct: 166 FEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQ 213

[Close]

BLAST of Clc03G16660 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 78  SLCSFKFKKGFTAAAAAEENGNGNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYS 137
           SL    F    + + AA E G+  ECA+CL+ F DGEE++ LP C H FH  CID WL S
Sbjct: 77  SLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVS 136

Query: 138 HSDCPLCR---TPVVAPGLSQHQTTAEQQENS 167
            S CP CR   TPV       H +TAE ++ +
Sbjct: 137 RSSCPSCRRILTPVRCDRCG-HASTAEMKDQA 167

[Close]

BLAST of Clc03G16660 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-15
Identity = 52/169 (30.77%), Postives = 76/169 (44.97%), Query Frame = 0


Query: 12  PTPHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIIIKWCSDNRHRRASPALAGSYAE---- 71
           P P P +    +L   + V+G+  + L L  F+ +      R   AS     +  +    
Sbjct: 30  PPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQEDED 89

Query: 72  -----------------MMNSSRSFQSSLCSFKFKKGFTAAAAAEENGNGNECAVCLSAF 131
                             +   RS  +S+    FKKG       E   +G EC+VCL+ F
Sbjct: 90  ETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKG-------EGIIDGTECSVCLNEF 149

Query: 132 EDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRTPVVAPGLSQHQTT 160
           E+ E ++ LP+C+H FH +CID WL SH +CPLCR PV+      HQ T
Sbjct: 150 EEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQET 191

The following BLAST results are available for this feature:

BLAST of Clc03G16660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879803.1	3.4e-86	91.01	RING-H2 finger protein ATL39-like [Benincasa hispida]	[more]
XP_022960602.1	7.1e-76	81.77	E3 ubiquitin-protein ligase EL5-like [Cucurbita moschata]	[more]
KAG6590024.1	2.3e-74	80.87	RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_022987479.1	5.1e-74	80.66	E3 ubiquitin-protein ligase EL5-like [Cucurbita maxima]	[more]
XP_023516728.1	8.7e-74	79.89	E3 ubiquitin-protein ligase EL5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc03G16660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRB7	3.5e-17	36.05	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
P93823	6.0e-17	33.33	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9LSW9	3.0e-16	34.12	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q9LF64	5.0e-16	34.59	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
O22755	2.1e-14	44.57	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]

BLAST of Clc03G16660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7W2	3.5e-76	81.77	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461337...	[more]
A0A6J1JJ05	2.5e-74	80.66	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 P...	[more]
A0A6J1HZG2	1.1e-71	79.03	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467629 P...	[more]
A0A6J1D0Z7	2.2e-70	79.67	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101660...	[more]
A0A5A7UKT6	1.3e-67	79.77	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of Clc03G16660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04360.1	4.2e-18	33.33	RING/U-box superfamily protein	[more]
AT5G43420.1	2.1e-17	34.12	RING/U-box superfamily protein	[more]
AT5G17600.1	3.6e-17	34.59	RING/U-box superfamily protein	[more]
AT2G17450.1	1.5e-15	44.57	RING-H2 finger A3A	[more]
AT5G10380.1	2.6e-15	30.77	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 103..144 e-value: 5.0E-6 score: 36.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..145 e-value: 1.4E-13 score: 51.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 103..145 score: 12.223724
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 63..150 e-value: 4.7E-21 score: 76.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..177
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 6..172
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 103..145 e-value: 4.47118E-18 score: 71.5723
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 88..151
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 6..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G16660.1	Clc03G16660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane