Clc03G15945 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G15945
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	arabinogalactan peptide 13-like
Location	ClcChr03: 28205531 .. 28208582 (-)
RNA-Seq Expression	Clc03G15945
Synteny	Clc03G15945

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAATGAAGTTTCAAGCTTTGATGGTGATAATGGTGGTTGTTTTAATGGCTTTCTCATCCTCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTGCTTCTGATGCTCCAATTTCTCTTCCAGCTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTGGATTCTTCCTCTAAATTCTTCCACCTTTTTTTTTTTTTTTTTTTTAATTTCACTCACCATTTATATAGTAATTTCTAATGGATATATTAATATGTGTGTGTTCTTTAAACCCATGTCTAGAAATTATGAAATGTCTATGAAGGAAGGAAATGGAGAGATGGGTTGGTGGTTTTTTTTTTTTTTTTAGGGTTATTAATTGTGAGGTGATGGTTGAATTTGTTTGGGTGTGATTTGGGATTATTAATTTTATGTATATTTTCCATATTTAATGTTATGTTATTATTATTTTTTATATCCTCTTCTTTCTGGTAATGTTCTTATCCTTTTGCTATTTTACATGTGTCTTTCACTTAGCAATTAAAGTCATTTACTTCTTAAGTAGAAAATAATTGAATTTTTAACTCAAGAAACAAAATCATTATTCATTTTTTAAACAATCAAATTGTTTTTCTTAGAATTTAATGTTTAAATACTACTTCGGTCTCCGTATTTTTTACTTTGATTCATTTTAATCTTTATATATTTTTAACTTTTGTTCATTTTTGTCCTTTAACTTTAGAAAAGTGACTATTTTGATCTCTTAAAAATGAAGTAAAAATGAGAATGAAGAGACCAAAATGGTCAATTTTGAAAGTACAAGAACCAAAATGAATATTTTGAAAGTATATGAACCAAAATTGAAAATATAGGGTCGAAAATGAACATTTTTTAAAGTATAAGGATTAAAATAAACGAAAACAAAAAGTACAGATATCAAAGTAATATTTAAACTTAAATTTAATACATAATTTTTTTTTTTATGTATATAACATATTAAATGTTGGCTAGTCATTGCATAATAAAAGTTTGCTTCTTATATTAATGTTACTATGCAAATAGGTATTCCATTTTGAAATTATAAGGACTAATATTAGTAAAATTTGAAAGTGTATGGAAACACCAAAATATATGGCCTAAAAAAATAGGTTTGAGAAATGAAAATATTATTTAAACTTACATTTTAGTTTTTAAAATTTTTAAGAGATGAAAATATGAATATATAGAAATTTCAAAATATGAAAAACATGTTTGAGACAAAATCAAGACTTAGCACATGGGAGGTCAGTGATTGAGATTGAGCTGTGGCTTTACAAGGCAGAGACTCCATTATTTGTAAAACTTTCAAACCCAAACTTTAGGTTAATTAAATGGAAAATGTATATGGTGAATGGTGATGATATTGAGACCAAGCAAATTTGAATGTCAAATAATCTACATTACTACCCAAGCAAACTTAGCTCAACGGTAACTAATATAACATTTTATCATAGAAGTTGAAGATTTGATCTTCCATCTTACAATTGTTGTATTAAAAAAAATATTTTACGTTAATTTTAAAAATTCAGGACAAATTACAAAATCACCCCTAAAGTATAGTAGTAGTTGCTATCAAGCTTACAATAATCGTAAAAATTGAACCCTCAAACTTATACAATTATTATAATTTACACAATTATGTAAGTTTGAGGGTCCAATTTTAACCATCGGATAAGGTTGACGGCTCAATTTTTAAATTTGAAAGTTTAAGGGTACAATGGCAACTATCATCATACTATAAGGATGGGTTTTTGTGATTTGTCCTTAAATTTATATCTATTTAGTCCCTTGATTTAAATTTTTTTTCTTTTCTGAGAGTTCTTTCTTAAACGTTTCATCTTTTTTGTCCAATAAATTTCTAATATTTAACTTTTGTATCTAATAGGTTATTGACGTATTTGACAATTTTCAAAATTGATGGACTCACCGGATACTAAATTAAAAGTTTAGGTTTCTAATAGATATAAAATTCAATTTTATATTGAATAGATCGGTTATTTTTTAAAGACTTTCAATATGTTAAAATAAAAAAAATAGAAAATGTGGAGACCTATCATACACTTTGAAAGTTCATCAACTAAATTTCTAACTTATCCAATAAATTAGACCCTTTTCAATAACCATTTGGCTTTTGAAAATTAAGCCTTAATTATTACTTCCACTTATAAGTTTTTATTTTTATTTTTATTTTGTTATCCACCTTTCATCGATAGAACACGAATAGATGTCTATCTAGGTCTATCGCGGTCTATCACAGATAGAAAATAAAATTTTGTTGTAAATAGTTTGATATTTTTTCTATTTATAATAATTTTCCTAATATTAGAAATTACACTCTCTATTAGTAATTTATAATTATTTTCACTCAATTTCATTTAAAATAAGCTCAAAACCACTTAAATAAAATGATTGTTTTCAAATATAGCAAAATGAGTTAAACTATTTACAAATATAGAAAATTTTCACTGTTTATCAACGATATCACTGATAAACAATAAAATTTTTCGATATTTGTAAATAGTTCGATATATTTTCTATTTATAAATAATTTTTCTAAATAAAATCATTATTCTTCTCCATTTCTACCAAAGTAGCAAGAAAGATATTATGGAATTCTTCTTAAAAATAAAAGATGATCGAAAAAAATGAAGAACTATTCATATTATAAATAAAAAGTTGCTTTTATTTATTTAAACCAACATTTTTCTCTGATATTATATTACTACAAACATTTTAAAGAAGTCTATGTATGTGTAAACATTATGAATTAACGATTTTAAATCGAAATTTCAATGAAAAATACAAATAGATTTTTAATTAATAAGTTATTACTTTCTCAGCCAAAATTAGGAGTACAAATTGATTTTTTCCCTACTAATATTTATTAATAAATATCAACCAATGAAACACATATTAAATAAGAAAAAAAAAAAAAAAAAAAAACAATTGTAAGATCCTAAGTAGAGTTCATGTTGATAGGACACTTCAAAATTCCACCTTGGAATGAAGAATGGCCACATTTTCCTTTAG

mRNA sequence

ATGGAAGCAATGAAGTTTCAAGCTTTGATGGTGATAATGGTGGTTGTTTTAATGGCTTTCTCATCCTCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTGCTTCTGATGCTCCAATTTCTCTTCCAGCTTTAATGGCTTCTCTTGCTCCTCTTGACACTTCAAAATTCCACCTTGGAATGAAGAATGGCCACATTTTCCTTTAG

Coding sequence (CDS)

ATGGAAGCAATGAAGTTTCAAGCTTTGATGGTGATAATGGTGGTTGTTTTAATGGCTTTCTCATCCTCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTGCTTCTGATGCTCCAATTTCTCTTCCAGCTTTAATGGCTTCTCTTGCTCCTCTTGACACTTCAAAATTCCACCTTGGAATGAAGAATGGCCACATTTTCCTTTAG

Protein sequence

MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPLDTSKFHLGMKNGHIFL

Homology

[Close]

BLAST of Clc03G15945 vs. NCBI nr
Match: KAG7022018.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          M AMKF+ALMV MVV +MAFSSSIVAAQEAPAPSPASDAP+SLP LMASLAPL
Sbjct: 1  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPL 53

[Close]

BLAST of Clc03G15945 vs. NCBI nr
Match: XP_022988237.1 (arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMKFQALM+ MVV  MA SS+IVAAQEAPAPSPASDAP+SLP LMASLAPL
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPL 53

[Close]

BLAST of Clc03G15945 vs. NCBI nr
Match: XP_038879727.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 3.5e-10
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MEAMKFQAL-MVIMVVVLMAF-SSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMK QAL M+IMVVVLMAF SSSIVAAQEAPAPSPASDAPISLP LMASLAPL
Sbjct: 1  MEAMKSQALMMMIMVVVLMAFSSSSIVAAQEAPAPSPASDAPISLPTLMASLAPL 55

[Close]

BLAST of Clc03G15945 vs. NCBI nr
Match: KAG7023913.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMKFQALM+ MVV  MA SS+IVAAQEAPAPSPASDA +SLP LMASLAPL
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPL 53

[Close]

BLAST of Clc03G15945 vs. NCBI nr
Match: KAE8653471.1 (hypothetical protein Csa_007150 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 3  AMKFQALMV-IMVVVLMAFSSS--IVAAQEAPAPSPASDAPISLPALMASLAPLDTSKFH 61
          A +FQ LMV +MVVVL+A SSS  IVAAQEAPAPSPASDA +S+P LMAS  PL T K H
Sbjct: 5  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLGT-KDH 64

[Close]

BLAST of Clc03G15945 vs. ExPASy Swiss-Prot
Match: Q9C8A4 (Arabinogalactan protein 21 OS=Arabidopsis thaliana OX=3702 GN=AGP21 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.6e-04
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1  MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMK + +MV ++VV +AFS++  A  EAPAPSP SDA + +PAL AS+  L
Sbjct: 1  MEAMKMK-MMVFIMVVAVAFSAATAATVEAPAPSPTSDAAMFVPALFASVVAL 52

[Close]

BLAST of Clc03G15945 vs. ExPASy TrEMBL
Match: A0A6J1JCI6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMKFQALM+ MVV  MA SS+IVAAQEAPAPSPASDAP+SLP LMASLAPL
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPL 53

[Close]

BLAST of Clc03G15945 vs. ExPASy TrEMBL
Match: A0A0A0LWU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 3  AMKFQALMV-IMVVVLMAFSSS--IVAAQEAPAPSPASDAPISLPALMASLAPL 54
          A +FQ LMV +MVVVL+A SSS  IVAAQEAPAPSPASDA +S+P LMAS  PL
Sbjct: 5  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 58

[Close]

BLAST of Clc03G15945 vs. TAIR 10
Match: AT1G55330.1 (arabinogalactan protein 21 )

HSP 1 Score: 44.3 bits (103), Expect = 4.7e-05
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1  MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMK + +MV ++VV +AFS++  A  EAPAPSP SDA + +PAL AS+  L
Sbjct: 1  MEAMKMK-MMVFIMVVAVAFSAATAATVEAPAPSPTSDAAMFVPALFASVVAL 52

[Close]

BLAST of Clc03G15945 vs. TAIR 10
Match: AT3G13520.1 (arabinogalactan protein 12 )

HSP 1 Score: 41.6 bits (96), Expect = 3.0e-04
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  MEAMKFQALMVIMVVVLMAFSS--SIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          ME+MK + L+V+++V ++AFS+  ++ A  EAPAPSP SDA + +PAL AS+A L
Sbjct: 1  MESMKMK-LIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAAL 54

[Close]

BLAST of Clc03G15945 vs. TAIR 10
Match: AT4G26320.1 (arabinogalactan protein 13 )

HSP 1 Score: 40.4 bits (93), Expect = 6.7e-04
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MEAMKFQALMVIMVVVLMAFSS-SIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMK + L V ++V  MAFS+    AA EAPAPSP SDA +++PA  AS+A L
Sbjct: 1  MEAMKMR-LFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATL 53

The following BLAST results are available for this feature:

BLAST of Clc03G15945 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022018.1	1.4e-11	86.79	Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022988237.1	1.2e-10	84.91	arabinogalactan peptide 13-like [Cucurbita maxima]	[more]
XP_038879727.1	3.5e-10	90.91	arabinogalactan protein 13-like [Benincasa hispida]	[more]
KAG7023913.1	1.0e-09	83.02	Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAE8653471.1	1.2e-05	70.49	hypothetical protein Csa_007150 [Cucumis sativus]	[more]

BLAST of Clc03G15945 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C8A4	6.6e-04	54.72	Arabinogalactan protein 21 OS=Arabidopsis thaliana OX=3702 GN=AGP21 PE=1 SV=1	[more]

BLAST of Clc03G15945 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JCI6	5.8e-11	84.91	arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3...	[more]
A0A0A0LWU9	2.8e-05	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1	[more]

BLAST of Clc03G15945 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55330.1	4.7e-05	54.72	arabinogalactan protein 21	[more]
AT3G13520.1	3.0e-04	50.91	arabinogalactan protein 12	[more]
AT4G26320.1	6.7e-04	55.56	arabinogalactan protein 13	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34114:SF18	ARABINOGALACTAN PEPTIDE 13-LIKE	coord: 1..53
IPR039281	Arabinogalactan protein 3/12/13/14/21	PANTHER	PTHR34114	ARABINOGALACTAN PEPTIDE 1	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G15945.1	Clc03G15945.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane