Clc03G15600 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G15600
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L30
LocationClcChr03: 27853818 .. 27855659 (-)
RNA-Seq ExpressionClc03G15600
SyntenyClc03G15600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGAGTAACCCTTAGGCGCTCTATATATACTTCAAGAATTAGGGTTTTTTTGGCTGTTCAGTCGGCGAATTCAGCTTCTCTCAGCTTCCATCATGGTGACCGCCAAGAAGACGGTCAGTTTCTTCTTCCATTCCCGGCGATTTTGTGTTTTTTTCTTCCATTTTCGTTTCGAGTGTTGTGATTCTGACAGTTTTCTTTCTTGTTACCTTTAACAGAAGAAGACTCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGGTAAACCATTGAACGAACTTTCATCTCTGTGTTATTGATTTGATCTCTAGACTTAGCATCAACGGATGTTTGGCTGATCCCTTATCATTGTTGATATTCGGCTTATTTTTGAATTGATCAGTTTTAGCTGAAATTACTGAAAGTTTCGATAAGCTGGAGAGAATGAAAGTGTTGTATGCTGCCGATCTGAAACTTTGTTTAGCCGATTTAGGTTACTAATTTGTGTTATCCCCATTATATGAAACTACTATATTAGCGTTTTTTCTTTGAGCAGTAAAGGGATCTGTAGTTTCTGATTTATTTTGTTGTCCATGCTTTCTTGTAGCGTTTAGTATCTGCATTTTGTGGGTGTATCTGATTTTTGTTTGGTTTGCAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAATCCGAGATCGAATACTATGCGATGTTGGCGAAGGTTGGAGTTCACCATTACAACGGAAGTACGTTTCTAACCTTTTAAAAACAGGATTGGCCTTTTTTTGGTACTAGGTTTTCATTTATTTGCCCTTTAGAATTAGACCATGTATCTATATCTACCTGCATTTTGTGACTTGAGTGAAAATTTCACATTGTTTCGATTCTTGGTTGCTGGATTTGTGTGATTTCTTATTGGCTTTTCCCTATGTAACTAAATCACTTGCTTCGTTTCATGATTATGTTCATACCTTTGACTCTTTGTCATTTTTTTGAACAAGAAATGGTGAGTGCAATAGAAAAAACCAGGCGGAAGGTCACTAAAGAACAACCTAGGGGCCGAGTAGAGATAACCCCAATCCAGAAAGCCAAAGAATACGAGCCTATTAATTGTTTAGGAAACAAAAGAATTTAAGATAGTCTTTTAACACTTTACCCTTATCATTCTAGGATAGTGCTTCTGGTTGTTCTGCATTCAAAGTTGATTATCGTATTGGACTTCTCATGATCAAACCTTTCTTTTGTATGTTATCAGGCAATGTAGACCTCGGAACTGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGTATTCTTCTCGAAAATCCACTCTTCTACTTTTGGATTACTGCCTGAACATAATATTCTGATTAAGGTATTTTAATGTATTCTTAGGTGATTCGGATATTATCAAGAGCATGCCTGGAGAAAGTTAGGTTGCAGCTTCCTCTCATCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTTAATCCACTTGATTTTGGGTTGAACGTAATGATGTGTTTTGCTTGTGAGGCATGATATTATTGAACGAATGGTTTCATTATAAACCCTTTCCTTATTTATGTTCGAGATCATCTTATTCCAGAAATCTTTCATATCATAATTTTGGTGTTCTTACCTCAACTGTTAACAAAACAAGCATGTTGTCTCCAACTATTTATTTTATCGTGTCAACTTATCTGTTCTTATTTTGGAACAAAATCTGTCATTTTTGTTAAGTAAGACACAATTAACTAAGTAATTTAC

mRNA sequence

TTAGAGTAACCCTTAGGCGCTCTATATATACTTCAAGAATTAGGGTTTTTTTGGCTGTTCAGTCGGCGAATTCAGCTTCTCTCAGCTTCCATCATGGTGACCGCCAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGTTTTAGCTGAAATTACTGAAAGTTTCGATAAGCTGGAGAGAATGAAAGTGTTGTATGCTGCCGATCTGAAACTTTGTTTAGCCGATTTAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAATCCGAGATCGAATACTATGCGATGTTGGCGAAGACCTCGGAACTGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGTATTCTTCTCGAAAATCCACTCTTCTACTTTTGGATTACTGCCTGAACATAATATTCTGATTAAGGTGATTCGGATATTATCAAGAGCATGCCTGGAGAAAGTTAGGTTGCAGCTTCCTCTCATCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTTAATCCACTTGATTTTGGGTTGAACGTAATGATGTGTTTTGCTTGTGAGGCATGATATTATTGAACGAATGGTTTCATTATAAACCCTTTCCTTATTTATGTTCGAGATCATCTTATTCCAGAAATCTTTCATATCATAATTTTGGTGTTCTTACCTCAACTGTTAACAAAACAAGCATGTTGTCTCCAACTATTTATTTTATCGTGTCAACTTATCTGTTCTTATTTTGGAACAAAATCTGTCATTTTTGTTAAGTAAGACACAATTAACTAAGTAATTTAC

Coding sequence (CDS)

ATGGTGACCGCCAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGTTTTAGCTGAAATTACTGAAAGTTTCGATAAGCTGGAGAGAATGAAAGTGTTGTATGCTGCCGATCTGAAACTTTGTTTAGCCGATTTAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAATCCGAGATCGAATACTATGCGATGTTGGCGAAGACCTCGGAACTGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGTATTCTTCTCGAAAATCCACTCTTCTACTTTTGGATTACTGCCTGAACATAATATTCTGATTAAGGTGATTCGGATATTATCAAGAGCATGCCTGGAGAAAGTTAGGTTGCAGCTTCCTCTCATCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTTAATCCACTTGATTTTGGGTTGAACGTAATGATGTGTTTTGCTTGTGAGGCATGA

Protein sequence

MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVLYAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAKTSELLVANTTEYAASALSILVFFSKIHSSTFGLLPEHNILIKVIRILSRACLEKVRLQLPLISDHRFLFQSFFFNPLDFGLNVMMCFACEA
Homology
[Close]
BLAST of Clc03G15600 vs. NCBI nr
Match: XP_039052569.1 (60S ribosomal protein L30-like [Hibiscus syriacus])

HSP 1 Score: 124.8 bits (312), Expect = 8.0e-25
Identity = 71/99 (71.72%), Postives = 79/99 (79.80%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV  KKTKKTHESINNRL LVMKSGKYTLGYKTVLK+LRNSKVL +     ++L+ M  L
Sbjct: 1  MVATKKTKKTHESINNRLTLVMKSGKYTLGYKTVLKSLRNSKVL-DSAAHIEQLQMMGFL 60

Query: 61 -YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
           +  ++KL    LGKLIIIANNCPPLRKSEIEYYAML K
Sbjct: 61 FFHGEVKLNGFHLGKLIIIANNCPPLRKSEIEYYAMLCK 98

[Close]
BLAST of Clc03G15600 vs. NCBI nr
Match: KAF2300088.1 (hypothetical protein GH714_008128 [Hevea brasiliensis])

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-24
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSG+YTLGYKTVLK+LRNSK           LE M +L
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGRYTLGYKTVLKSLRNSK----------DLEEMNLL 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
               K  + ++ KL+IIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 LVFKSKTLIGEVRKLVIIANNCPPLRKSEIEYYAMLAK 88

[Close]
BLAST of Clc03G15600 vs. NCBI nr
Match: KCW87293.1 (hypothetical protein EUGRSUZ_B03786 [Eucalyptus grandis])

HSP 1 Score: 117.9 bits (294), Expect = 9.8e-23
Identity = 67/98 (68.37%), Postives = 69/98 (70.41%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKV+                
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVVLS-------------- 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKL+IIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 ------------GKLVIIANNCPPLRKSEIEYYAMLAK 72

[Close]
BLAST of Clc03G15600 vs. NCBI nr
Match: XP_004251199.1 (60S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal protein L30 [Solanum pennellii] >XP_016548732.1 PREDICTED: 60S ribosomal protein L30 [Capsicum annuum])

HSP 1 Score: 115.2 bits (287), Expect = 6.3e-22
Identity = 67/98 (68.37%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLIIIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 ------------GKLIIIANNCPPLRKSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. NCBI nr
Match: XP_008451087.1 (PREDICTED: 60S ribosomal protein L30 [Cucumis melo] >KAA0055665.1 60S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09919.1 60S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 6.3e-22
Identity = 67/98 (68.37%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLIIIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 ------------GKLIIIANNCPPLRKSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.2e-24
Identity = 65/98 (66.33%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SK                  
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLIIIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 ------------GKLIIIANNCPPLRKSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.6e-22
Identity = 61/98 (62.24%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LR++K                  
Sbjct: 1  MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLIIIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 ------------GKLIIIANNCPPLRKSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-20
Identity = 57/98 (58.16%), Postives = 66/98 (67.35%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SK                  
Sbjct: 1  MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLI+I++NCPPLR+SEIEYYAMLAK
Sbjct: 61 ------------GKLILISSNCPPLRRSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. ExPASy Swiss-Prot
Match: Q9SDG6 (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-20
Identity = 57/100 (57.00%), Postives = 65/100 (65.00%), Query Frame = 0 

Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
           MV AKKTKK+ ++INN+L LVMKSGKYTLGYKTVL+TLRNSK                  
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSK------------------ 60

Query: 61  YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAKTS 101
                        KL+II+NNCPPLRKSEIEYYAMLAK +
Sbjct: 61  ------------AKLVIISNNCPPLRKSEIEYYAMLAKVT 70

[Close]
BLAST of Clc03G15600 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-20
Identity = 57/98 (58.16%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MVT KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SK                  
Sbjct: 1  MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLI+I+ NCPPLR+SEIEYYAMLAK
Sbjct: 61 ------------GKLILISTNCPPLRRSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. ExPASy TrEMBL
Match: A0A6A6LIK2 (Ribosomal_L7Ae domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_008128 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSG+YTLGYKTVLK+LRNSK           LE M +L
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGRYTLGYKTVLKSLRNSK----------DLEEMNLL 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
               K  + ++ KL+IIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 LVFKSKTLIGEVRKLVIIANNCPPLRKSEIEYYAMLAK 88

[Close]
BLAST of Clc03G15600 vs. ExPASy TrEMBL
Match: A0A059D972 (Ribosomal_L7Ae domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03786 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.7e-23
Identity = 67/98 (68.37%), Postives = 69/98 (70.41%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKV+                
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVVLS-------------- 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKL+IIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 ------------GKLVIIANNCPPLRKSEIEYYAMLAK 72

[Close]
BLAST of Clc03G15600 vs. ExPASy TrEMBL
Match: A0A1S3X2T9 (60S ribosomal protein L30-like OS=Nicotiana tabacum OX=4097 GN=LOC107760678 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-22
Identity = 67/98 (68.37%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLIIIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 ------------GKLIIIANNCPPLRKSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. ExPASy TrEMBL
Match: A0A5D3CI16 (60S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00350 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-22
Identity = 67/98 (68.37%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLIIIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 ------------GKLIIIANNCPPLRKSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. ExPASy TrEMBL
Match: A0A6J1JJ11 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-22
Identity = 67/98 (68.37%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLIIIANNCPPLRKSEIEYYAMLAK
Sbjct: 61 ------------GKLIIIANNCPPLRKSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-21
Identity = 57/98 (58.16%), Postives = 66/98 (67.35%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV AKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SK                  
Sbjct: 1  MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLI+I++NCPPLR+SEIEYYAMLAK
Sbjct: 61 ------------GKLILISSNCPPLRRSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-21
Identity = 57/98 (58.16%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MVT KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SK                  
Sbjct: 1  MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLI+I+ NCPPLR+SEIEYYAMLAK
Sbjct: 61 ------------GKLILISTNCPPLRRSEIEYYAMLAK 68

[Close]
BLAST of Clc03G15600 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-20
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 1  MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITESFDKLERMKVL 60
          MV  KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SK                  
Sbjct: 1  MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSK------------------ 60

Query: 61 YAADLKLCLADLGKLIIIANNCPPLRKSEIEYYAMLAK 99
                      GKLI+I++NCPPLR+SEIEYYAMLAK
Sbjct: 61 ------------GKLILISSNCPPLRRSEIEYYAMLAK 68

The following BLAST results are available for this feature:
BLAST of Clc03G15600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_039052569.18.0e-2571.7260S ribosomal protein L30-like [Hibiscus syriacus][more]
KAF2300088.12.3e-2469.39hypothetical protein GH714_008128 [Hevea brasiliensis][more]
KCW87293.19.8e-2368.37hypothetical protein EUGRSUZ_B03786 [Eucalyptus grandis][more]
XP_004251199.16.3e-2268.3760S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal p... [more]
XP_008451087.16.3e-2268.37PREDICTED: 60S ribosomal protein L30 [Cucumis melo] >KAA0055665.1 60S ribosomal ... [more]
BLAST of Clc03G15600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O498849.2e-2466.3360S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
Q9M5M66.6e-2262.2460S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1[more]
Q9C8F72.8e-2058.16Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
Q9SDG63.6e-2057.0060S ribosomal protein L30 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL30 PE=3... [more]
Q8VZ194.7e-2058.1660S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
BLAST of Clc03G15600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A6LIK21.1e-2469.39Ribosomal_L7Ae domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_... [more]
A0A059D9724.7e-2368.37Ribosomal_L7Ae domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRS... [more]
A0A1S3X2T93.1e-2268.3760S ribosomal protein L30-like OS=Nicotiana tabacum OX=4097 GN=LOC107760678 PE=3... [more]
A0A5D3CI163.1e-2268.3760S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1JJ113.1e-2268.3760S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 ... [more]
BLAST of Clc03G15600 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G36240.12.0e-2158.16Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G77940.13.3e-2158.16Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT3G18740.12.8e-2056.12Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 6..125
e-value: 1.7E-26
score: 93.9
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 6..106
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 60..99
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 1..63
NoneNo IPR availablePANTHERPTHR11449:SF2360S RIBOSOMAL PROTEIN L30coord: 60..99
coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G15600.2Clc03G15600.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome