Clc03G15530 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G15530
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	lamin-like protein
Location	ClcChr03: 27766693 .. 27767953 (-)
RNA-Seq Expression	Clc03G15530
Synteny	Clc03G15530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAATTGTATGGTCTCTCAACCTCCATTGCATGAAAAAAAATGCATGAGATTTTTGTTGCACTTTCAAAACACAATTTTGGCCTTTTTTTCCCCTTCTTTTTTAGGGTTCTCCTTCCTTCTTCAATTTCAATTCAAGCAGCTGAAAATGCTCGGGATGGCGGCGGAGGCAGTGACAACCATGGCGGTCGTGGCGGTGGCCGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAGGGTTGGAGGAGGAAAATATACTTGGACACCTAATATTAACTTCACTGATTGGTCAATTCATGAACACTTTTATGTTGGTGATTGGCTTTGTAAGTTGTTCATTTTCTTTTCTTTTTGATGATTATATGAGATGGAAATTTTGGCAATGGGATTGTGTTATCTAAACAGTACTAGAGAATTTTGGTCAGGTTTTTCATATAAAGTTAGGGTTAAAAGAAGTCAAATTTTAGGGGTAATTTCCCATTTGTAAGGTAAAATATGTTTTCACCTAAGCTAATCATGTCCCTATTTTTCAATTGTATTTAAAATAATCATTAATTTTTAGTTCTTACTCCATTTCTTTTCATTTTGGGGTTTTCACCTTTTCAACTCTTTTTCAAATAACATATATATGATCATTAAAGTCAAAGAAAATCTCACATCTTAATATGAAAAACAAAATTTTAATTTGGCTCATATGTAGACACATATACATGAAGATCAATTATATTATATCATAAATGCGTTGTAGGCAACAAAATTGTTATTATTATTATTTTGAGTCCAAAAAAGGTGTATAATTTGATGAAGATTTGAATCTTTGATTACTTTTAAGAAGGTTTATAATCTTTTGTAGTTATAGACTTTTACGATTTTTCTAACTTTTTCTTCTTCTGGGGTTTCTTTTTTTTTTTTTTTTTTTTTTTAGATTTTGGGTTTGATAAACATATCTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGGGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGAGATGTGTTCAATCTAACAGAAGCAAAAACATATTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAGTACTCTCCTCCCATTTCACCACCAAATTTACCCAATACTTCTCCATCTTTACATTCATTAATATGGCCTTTCTCCCTCTTGCTATCCATCAACATTTCCATGGCTAATTCCTTCTTCTAA

mRNA sequence

ATGCAAATTCTGAAAATGCTCGGGATGGCGGCGGAGGCAGTGACAACCATGGCGGTCGTGGCGGTGGCCGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAGGGTTGGAGGAGGAAAATATACTTGGACACCTAATATTAACTTCACTGATTGGTCAATTCATGAACACTTTTATGTTGATTTTGGGTTTGATAAACATATCTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGGGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGAGATGTGTTCAATCTAACAGAAGCAAAAACATATTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAGTACTCTCCTCCCATTTCACCACCAAATTTACCCAATACTTCTCCATCTTTACATTCATTAATATGGCCTTTCTCCCTCTTGCTATCCATCAACATTTCCATGGCTAATTCCTTCTTCTAA

Coding sequence (CDS)

ATGCAAATTCTGAAAATGCTCGGGATGGCGGCGGAGGCAGTGACAACCATGGCGGTCGTGGCGGTGGCCGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAGGGTTGGAGGAGGAAAATATACTTGGACACCTAATATTAACTTCACTGATTGGTCAATTCATGAACACTTTTATGTTGATTTTGGGTTTGATAAACATATCTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGGGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGAGATGTGTTCAATCTAACAGAAGCAAAAACATATTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAGTACTCTCCTCCCATTTCACCACCAAATTTACCCAATACTTCTCCATCTTTACATTCATTAATATGGCCTTTCTCCCTCTTGCTATCCATCAACATTTCCATGGCTAATTCCTTCTTCTAA

Protein sequence

MQILKMLGMAAEAVTTMAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVDFGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSPPISPPNLPNTSPSLHSLIWPFSLLLSINISMANSFF

Homology

[Close]

BLAST of Clc03G15530 vs. NCBI nr
Match: XP_038880463.1 (lamin-like protein [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-67
Identity = 131/158 (82.91%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 6   MLGMAAEAVTTMAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVD 65
           M GMA EAVTT+  +AVAGWLLFG EGRQPVLHRVGGGKYTWT NINFTDWSIHEHFYV 
Sbjct: 1   MFGMAVEAVTTVVAMAVAGWLLFGAEGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVG 60

Query: 66  ----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCF 125
               FGFDKHIYNVLEVNKTSYE CNDK FIFN+TRGGRDVFNLTEAKTYYFLSGRGFCF
Sbjct: 61  DWLYFGFDKHIYNVLEVNKTSYESCNDKGFIFNLTRGGRDVFNLTEAKTYYFLSGRGFCF 120

Query: 126 QGMKVAVFVEEYSPPISPPNLPNT---SPSLHSLIWPF 157
           QGMKVAVFVEE  P +SPPNLPN    SPSL  LI+PF
Sbjct: 121 QGMKVAVFVEESPPIVSPPNLPNLPNHSPSLQPLIFPF 158

[Close]

BLAST of Clc03G15530 vs. NCBI nr
Match: XP_031736018.1 (lamin-like protein [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 2.5e-65
Identity = 132/169 (78.11%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 6   MLGMAAEAVTTMAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVD 65
           M GMAAEA+  M VV V GWLL GVEG+QPVLH VGGGKYTWT NINFTDWSIH+HFYV 
Sbjct: 1   MFGMAAEAMIVMTVVMVVGWLLSGVEGKQPVLHNVGGGKYTWTTNINFTDWSIHDHFYVG 60

Query: 66  ----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCF 125
               FGFDKHIYNVLEVNKTSYE CN+KDFIFNIT+GGRDVFNLTEAKTYYFLSGRGFCF
Sbjct: 61  DWLYFGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCF 120

Query: 126 QGMKVAVFVEEYSPP----ISPPNLP----NTSPSLHSLIWPFSLLLSI 163
           QGMKVAVFVEEYSPP    IS PNLP    N SPSL  L+ PFS  L I
Sbjct: 121 QGMKVAVFVEEYSPPPSTIISSPNLPKDNSNLSPSLKPLLIPFSFFLLI 169

[Close]

BLAST of Clc03G15530 vs. NCBI nr
Match: XP_008451094.1 (PREDICTED: lamin-like protein [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 7.1e-65
Identity = 134/169 (79.29%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 6   MLGMAAEAVTTMAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVD 65
           M GMAA+ V T  VV V GWLL GVEG+QPVLH VGGGKYTWT NINFTDWSIHEHFYV 
Sbjct: 1   MFGMAAKVVIT-TVVVVVGWLLCGVEGKQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVG 60

Query: 66  ----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCF 125
               FGFDKHIYNVLEVNKTSYE CNDKDFIFNIT+GGRDVFNLTEAKTYYFLSGRGFCF
Sbjct: 61  DWLYFGFDKHIYNVLEVNKTSYENCNDKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCF 120

Query: 126 QGMKVAVFVEEYSPP----ISPPNL----PNTSPSLHSLIWPFSLLLSI 163
           QGMKVAVFVEEYS P    ISPPNL    PN SPSL  L+ PFS LL I
Sbjct: 121 QGMKVAVFVEEYSTPPPTIISPPNLPKNNPNLSPSLKPLLIPFSFLLLI 168

[Close]

BLAST of Clc03G15530 vs. NCBI nr
Match: KAG7023887.1 (Lamin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.5 bits (589), Expect = 5.5e-57
Identity = 119/169 (70.41%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 6   MLGMAAEA--VTTMAV-VAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHF 65
           M GM AEA  VTT+AV V +AGWLL GVEGR+PVLHRVGGGKYTWT N+NFTDWSIHEHF
Sbjct: 1   MFGMTAEATTVTTVAVIVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHF 60

Query: 66  YVD----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRG 125
           YV     FGFDK IYNVL+VNKTSY+ CN+ DF+FN+TRGGRDVFNLT+AK YYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 126 FCFQGMKVAVFVEEYSPPISPPNLPNTSPSLHSLIWPFSLLLSINISMA 168
           FCFQGMKVA+FVE+ SPPIS P + N S S+  L    SL + I ++ A
Sbjct: 121 FCFQGMKVAIFVED-SPPISSPKVSNHSSSIQPLKPLSSLSVLITLAFA 168

[Close]

BLAST of Clc03G15530 vs. NCBI nr
Match: XP_022988228.1 (lamin-like protein [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 9.4e-57
Identity = 118/167 (70.66%), Postives = 130/167 (77.84%), Query Frame = 0


Query: 6   MLGMAAEAVTTMAVVAV---AGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHF 65
           M GM AE  T   VV V   AGWLL GV+GRQPVLHRVGGGKYTWT NINFTDWSIHEHF
Sbjct: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60

Query: 66  YVD----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRG 125
           YV     FGFDK IYNVL+VNKTSY+ CN+ DF+FN+TRGGRDVFNLT+AK YYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 126 FCFQGMKVAVFVEEYSPPISPPNLPNTSPSLHSLIWPFSLLLSINIS 166
           FCFQGMKVA+FVE+ SPPIS P + N S S+  L    SL L I I+
Sbjct: 121 FCFQGMKVAIFVED-SPPISSPKIANHSSSIQPLKPLSSLSLFITIA 166

[Close]

BLAST of Clc03G15530 vs. ExPASy Swiss-Prot
Match: Q39131 (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.6e-20
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 38  HRVGGGKYTWTPNINFTDWSIHEHFYVD----FGFDKHIYNVLEVNKTSYEGCNDKDFIF 97
           + VG  K+ W PNIN+T W+  +HFY+     F FD++ +N+LEVNKT YEGC     I 
Sbjct: 29  YTVGENKF-WNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIR 88

Query: 98  NITRG-GRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSPP 137
           N TRG GRD+  L + K YY L G+G C+ GMK++V VE+  PP
Sbjct: 89  NWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPP 131

[Close]

BLAST of Clc03G15530 vs. ExPASy Swiss-Prot
Match: Q9T076 (Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-05
Identity = 36/118 (30.51%), Postives = 56/118 (47.46%), Query Frame = 0


Query: 41  GGGKYTWTPNINFTDWS------IHEHFYVDFGFDKHIYNVLEVNKTSYEGCNDKDFIFN 100
           G G +   P  N+  WS      +H+  Y  F + K   +VLEVNK  Y+ CN K+ I  
Sbjct: 35  GSGAWVTNPPENYESWSGKNRFLVHDTLY--FSYAKGADSVLEVNKADYDACNTKNPIKR 94

Query: 101 ITRGGRDVFNLTEAKTYYFLSG-RGFCFQGMKVAVFVEEYSPPISPPNLPNTSPSLHS 152
           +  G  ++ +L     +YF+SG    C +G K+ V V           +P+T+ S H+
Sbjct: 95  VDDGDSEI-SLDRYGPFYFISGNEDNCKKGQKLNVVV-------ISARIPSTAQSPHA 142

[Close]

BLAST of Clc03G15530 vs. ExPASy TrEMBL
Match: A0A1S3BQT0 (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103492474 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.5e-65
Identity = 134/169 (79.29%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 6   MLGMAAEAVTTMAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVD 65
           M GMAA+ V T  VV V GWLL GVEG+QPVLH VGGGKYTWT NINFTDWSIHEHFYV 
Sbjct: 1   MFGMAAKVVIT-TVVVVVGWLLCGVEGKQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVG 60

Query: 66  ----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCF 125
               FGFDKHIYNVLEVNKTSYE CNDKDFIFNIT+GGRDVFNLTEAKTYYFLSGRGFCF
Sbjct: 61  DWLYFGFDKHIYNVLEVNKTSYENCNDKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCF 120

Query: 126 QGMKVAVFVEEYSPP----ISPPNL----PNTSPSLHSLIWPFSLLLSI 163
           QGMKVAVFVEEYS P    ISPPNL    PN SPSL  L+ PFS LL I
Sbjct: 121 QGMKVAVFVEEYSTPPPTIISPPNLPKNNPNLSPSLKPLLIPFSFLLLI 168

[Close]

BLAST of Clc03G15530 vs. ExPASy TrEMBL
Match: A0A6J1JLN0 (lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485528 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.5e-57
Identity = 118/167 (70.66%), Postives = 130/167 (77.84%), Query Frame = 0


Query: 6   MLGMAAEAVTTMAVVAV---AGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHF 65
           M GM AE  T   VV V   AGWLL GV+GRQPVLHRVGGGKYTWT NINFTDWSIHEHF
Sbjct: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60

Query: 66  YVD----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRG 125
           YV     FGFDK IYNVL+VNKTSY+ CN+ DF+FN+TRGGRDVFNLT+AK YYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 126 FCFQGMKVAVFVEEYSPPISPPNLPNTSPSLHSLIWPFSLLLSINIS 166
           FCFQGMKVA+FVE+ SPPIS P + N S S+  L    SL L I I+
Sbjct: 121 FCFQGMKVAIFVED-SPPISSPKIANHSSSIQPLKPLSSLSLFITIA 166

[Close]

BLAST of Clc03G15530 vs. ExPASy TrEMBL
Match: A0A6J1DWA4 (lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111024085 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 7.7e-57
Identity = 121/170 (71.18%), Postives = 134/170 (78.82%), Query Frame = 0


Query: 11  AEAVTTMAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVD----F 70
           AEAV  +A+    GWLL GVEGR P+LHRVGGGKYTW PN+NFTDWSIHEHFYV     F
Sbjct: 7   AEAVAMVAL----GWLLCGVEGRDPMLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYF 66

Query: 71  GFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCFQGMKV 130
           GFDKHIYNVLEVN+TSYE CN+KDFIFNITRGGRDVFNLT+AK YYFLSGRGFC+QGMK+
Sbjct: 67  GFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSGRGFCYQGMKL 126

Query: 131 AVFVEEYSPP--ISPPNLP---NTSPSLHSLIWPFSLLLSINISMANSFF 172
           AVFVEE SPP   SPPNLP   N SPS+   ++   LLL   I+   SFF
Sbjct: 127 AVFVEE-SPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIANFISFF 171

[Close]

BLAST of Clc03G15530 vs. ExPASy TrEMBL
Match: A0A6J1HAJ6 (lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461613 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 120/169 (71.01%), Postives = 137/169 (81.07%), Query Frame = 0


Query: 6   MLGMAAEA--VTTMA-VVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHF 65
           M GM  EA  VTT+A VV +AGWLL GVEGR+PVLHRVGGGKYTWT N+NFTDWSIHEHF
Sbjct: 1   MFGMTVEATTVTTVAVVVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHF 60

Query: 66  YVD----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRG 125
           YV     FGFDK IYNVL+VNKTSY+ CN+ DF+FN+TRGGRDVFNLT+AK YYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 126 FCFQGMKVAVFVEEYSPPISPPNLPNTSPSLHSLIWPFSLLLSINISMA 168
           FCFQGMKVA+FVE+ SPPIS P + N S S+  L  P S  LS+ I++A
Sbjct: 121 FCFQGMKVAIFVED-SPPISSPKISNHSSSIQPL-KPLS-SLSVLITLA 166

[Close]

BLAST of Clc03G15530 vs. ExPASy TrEMBL
Match: A0A371EID2 (Lamin-like protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_55505 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 4.0e-45
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 28  FGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVDFGFDKHIYNVLEVNKTSYEGCN 87
           + +EGR P+LHRVGGG+YTW P +NFT W+ HEHFY DFGFDK IYNVLEVNKT+YE CN
Sbjct: 20  YKIEGRDPILHRVGGGRYTWAPKVNFTKWASHEHFYKDFGFDKRIYNVLEVNKTNYENCN 79

Query: 88  DKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSPPISPPNLPN-TS 147
           D  FI NITRGGRDVF L EA+ YYFL G+GFCFQGMK+A+ VEE +P + PP L N T 
Sbjct: 80  DTSFIKNITRGGRDVFQLLEARAYYFLCGKGFCFQGMKIAINVEEAAPALPPPALSNKTL 139

Query: 148 PS 149
           PS
Sbjct: 140 PS 141

[Close]

BLAST of Clc03G15530 vs. TAIR 10
Match: AT2G27035.1 (early nodulin-like protein 20 )

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-35
Identity = 69/136 (50.74%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 18  AVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFY----VDFGFDKHIY 77
           A+V V   +L  V   +  LHRVGGG+YTW  ++NF+DW+ H+ FY    + FGF++  +
Sbjct: 8   ALVYVTVMILIIVVEVESSLHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRH 67

Query: 78  NVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEY 137
           N+L+VNK+SYE C D D+IFNITRGGRDVF L E K YYF+ GRG+C +GMK+A+ V   
Sbjct: 68  NILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEPKPYYFICGRGYCLKGMKLAITVLPQ 127

Query: 138 SPPISPPNLPNTSPSL 150
            PP +P N  +T+  L
Sbjct: 128 PPPSAPTNFTSTTTPL 143

[Close]

BLAST of Clc03G15530 vs. TAIR 10
Match: AT5G15350.1 (early nodulin-like protein 17 )

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-21
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 38  HRVGGGKYTWTPNINFTDWSIHEHFYVD----FGFDKHIYNVLEVNKTSYEGCNDKDFIF 97
           + VG  K+ W PNIN+T W+  +HFY+     F FD++ +N+LEVNKT YEGC     I 
Sbjct: 29  YTVGENKF-WNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIR 88

Query: 98  NITRG-GRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSPP 137
           N TRG GRD+  L + K YY L G+G C+ GMK++V VE+  PP
Sbjct: 89  NWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPP 131

[Close]

BLAST of Clc03G15530 vs. TAIR 10
Match: AT4G12880.1 (early nodulin-like protein 19 )

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-19
Identity = 53/107 (49.53%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 42  GGKYTWTPNINFTDWSIHEHFYVD----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNITR 101
           G K  W PNIN+T W+  +HFYV     F F +  +N+LEVNK  YE C     I N TR
Sbjct: 32  GDKKFWNPNINYTLWAQGKHFYVGDWLYFVFYRDQHNILEVNKADYEKCISNRPIRNYTR 91

Query: 102 G-GRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSPPISPPNLP 144
           G GRD+  L E + YY L GRG C QGMK+ V VE  +PP  PP  P
Sbjct: 92  GAGRDIVPLYETRRYYLLDGRGGCVQGMKLDVLVE--TPPPPPPFTP 136

[Close]

BLAST of Clc03G15530 vs. TAIR 10
Match: AT3G01070.1 (early nodulin-like protein 16 )

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-19
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 40  VGGGKYTWTPNINFTDWSIHEHFYVD----FGFDKHIYNVLEVNKTSYEGCNDKDFIFNI 99
           VG  K+ W PNIN+T W+  +HFY+D    F ++++ YNV+EVN+T+Y  CN  + I N 
Sbjct: 29  VGDNKF-WNPNINYTIWAQDKHFYLDDWLYFVYERNQYNVIEVNETNYISCNPNNPIANW 88

Query: 100 TRG-GRDVFNLTEAKTYYFLSGR-GFCFQGMKVAVFVEEYSPPISPPNLPN 145
           +RG GRD+ +L   + YY +SG  G C+ GMK+AV VE+  PP  P   PN
Sbjct: 89  SRGAGRDLVHLNVTRHYYLISGNGGGCYGGMKLAVLVEK--PPPPPAAAPN 136

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BLAST of Clc03G15530 vs. TAIR 10
Match: AT4G12880.2 (early nodulin-like protein 19 )

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-13
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 61  HFYVDFGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRG-GRDVFNLTEAKTYYFLSGRGF 120
           +F ++F F +  +N+LEVNK  YE C     I N TRG GRD+  L E + YY L GRG 
Sbjct: 17  NFSLNFVFYRDQHNILEVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDGRGG 76

Query: 121 CFQGMKVAVFVEEYSPPISPPNLP 144
           C QGMK+ V VE  +PP  PP  P
Sbjct: 77  CVQGMKLDVLVE--TPPPPPPFTP 98

The following BLAST results are available for this feature:

BLAST of Clc03G15530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880463.1	1.2e-67	82.91	lamin-like protein [Benincasa hispida]	[more]
XP_031736018.1	2.5e-65	78.11	lamin-like protein [Cucumis sativus]	[more]
XP_008451094.1	7.1e-65	79.29	PREDICTED: lamin-like protein [Cucumis melo]	[more]
KAG7023887.1	5.5e-57	70.41	Lamin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022988228.1	9.4e-57	70.66	lamin-like protein [Cucurbita maxima]	[more]

BLAST of Clc03G15530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39131	5.6e-20	49.04	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]
Q9T076	2.3e-05	30.51	Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 S...	[more]

BLAST of Clc03G15530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BQT0	3.5e-65	79.29	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103492474 PE=4 SV=1	[more]
A0A6J1JLN0	4.5e-57	70.66	lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485528 PE=4 SV=1	[more]
A0A6J1DWA4	7.7e-57	71.18	lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111024085 PE=4 SV=1	[more]
A0A6J1HAJ6	1.3e-56	71.01	lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461613 PE=4 SV=1	[more]
A0A371EID2	4.0e-45	69.67	Lamin-like protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_55505 PE=4 S...	[more]

BLAST of Clc03G15530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27035.1	4.8e-35	50.74	early nodulin-like protein 20	[more]
AT5G15350.1	4.0e-21	49.04	early nodulin-like protein 17	[more]
AT4G12880.1	1.3e-19	49.53	early nodulin-like protein 19	[more]
AT3G01070.1	2.8e-19	45.95	early nodulin-like protein 16	[more]
AT4G12880.2	4.0e-13	48.81	early nodulin-like protein 19	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 47..124 e-value: 1.6E-9 score: 37.7
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 36..132 score: 22.22644
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 36..134 e-value: 2.1E-16 score: 62.0
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 37..130
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 16..151
None	No IPR available	PANTHER	PTHR33021:SF262	EARLY NODULIN-LIKE PROTEIN 20	coord: 16..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G15530.2	Clc03G15530.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity