Clc03G15250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G15250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotransposable element Tf2
Location	ClcChr03: 27098055 .. 27098456 (+)
RNA-Seq Expression	Clc03G15250
Synteny	Clc03G15250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAGAAAACTACTCCATGGATATACAATTTGAACAGGTATCCAGGAGACGTCAAGGTTCTGCTCAAAGAACCCTAACTATTCAATCAGACCATTCGAGTCTTCCTCCAATTCCTTCAAACACCTTGTTACGACTTTCCGGGCCAACAACCCCAAATAAGCGTGCCGCTTCCCCAGCCGCTTCTTCCTCAAAGTCTGTAATTCCGAGGAATCCTTCCTCGTATTCTCAAATAGTCAGGCCAAAGGTATTCCAACCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTTCACGAAGTTTGCGATCAAATATTTCCTCACGGGTTTAACTTCTTACCTGAGGATCTTTAA

mRNA sequence

ATGAGTGCAGAAAACTACTCCATGGATATACAATTTGAACAGGTATCCAGGAGACGTCAAGGTTCTGCTCAAAGAACCCTAACTATTCAATCAGACCATTCGAGTCTTCCTCCAATTCCTTCAAACACCTTGTTACGACTTTCCGGGCCAACAACCCCAAATAAGCGTGCCGCTTCCCCAGCCGCTTCTTCCTCAAAGTCTGTAATTCCGAGGAATCCTTCCTCGTATTCTCAAATAGTCAGGCCAAAGGTATTCCAACCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTTCACGAAGTTTGCGATCAAATATTTCCTCACGGGTTTAACTTCTTACCTGAGGATCTTTAA

Coding sequence (CDS)

ATGAGTGCAGAAAACTACTCCATGGATATACAATTTGAACAGGTATCCAGGAGACGTCAAGGTTCTGCTCAAAGAACCCTAACTATTCAATCAGACCATTCGAGTCTTCCTCCAATTCCTTCAAACACCTTGTTACGACTTTCCGGGCCAACAACCCCAAATAAGCGTGCCGCTTCCCCAGCCGCTTCTTCCTCAAAGTCTGTAATTCCGAGGAATCCTTCCTCGTATTCTCAAATAGTCAGGCCAAAGGTATTCCAACCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTTCACGAAGTTTGCGATCAAATATTTCCTCACGGGTTTAACTTCTTACCTGAGGATCTTTAA

Protein sequence

MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASPAASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQIFPHGFNFLPEDL

Homology

[Close]

BLAST of Clc03G15250 vs. NCBI nr
Match: KAA0038028.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 245.7 bits (626), Expect = 2.2e-61
Identity = 123/133 (92.48%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKRAASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+SVIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSVIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

[Close]

BLAST of Clc03G15250 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 6.4e-61
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKRAASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+S IPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

[Close]

BLAST of Clc03G15250 vs. NCBI nr
Match: TYJ98086.1 (hypothetical protein E5676_scaffold565G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 6.4e-61
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKRAASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+S IPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

[Close]

BLAST of Clc03G15250 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 6.4e-61
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKRAASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+S IPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

[Close]

BLAST of Clc03G15250 vs. NCBI nr
Match: KAA0038025.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKR ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+S IPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

[Close]

BLAST of Clc03G15250 vs. ExPASy TrEMBL
Match: A0A5A7T5B0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 123/133 (92.48%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKRAASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+SVIPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSVIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

[Close]

BLAST of Clc03G15250 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.1e-61
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKRAASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+S IPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

[Close]

BLAST of Clc03G15250 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.1e-61
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKRAASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+S IPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

[Close]

BLAST of Clc03G15250 vs. ExPASy TrEMBL
Match: A0A5D3BG66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00190 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.1e-61
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKRAASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+S IPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

[Close]

BLAST of Clc03G15250 vs. ExPASy TrEMBL
Match: A0A5A7T975 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002220 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.0e-61
Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSAENYSMDIQFEQVSRRRQGSAQRTLTIQSDHSSLPPIPSNTLLRLSGPTTPNKRAASP 60
           MSAENY+MD+QFEQVSRRRQGSAQRTLTIQSD SSLPPIPS  LLR SGPTTPNKR ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASP 60

Query: 61  AASSSKSVIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCDQ 120
           AASSS+S IPRNPSSYSQIVRPK+FQPRPPINGYFTKTTMVDLTIEPEFDGPSV EVC Q
Sbjct: 61  AASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQ 120

Query: 121 IFPHGFNFLPEDL 134
           IFPHGFNFLPEDL
Sbjct: 121 IFPHGFNFLPEDL 133

The following BLAST results are available for this feature:

BLAST of Clc03G15250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038028.1	2.2e-61	92.48	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0063832.1	6.4e-61	91.73	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYJ98086.1	6.4e-61	91.73	hypothetical protein E5676_scaffold565G00190 [Cucumis melo var. makuwa]	[more]
KAA0056777.1	6.4e-61	91.73	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
KAA0038025.1	1.8e-60	90.98	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Clc03G15250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G15250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5B0	1.1e-61	92.48	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE...	[more]
A0A5A7UVN1	3.1e-61	91.73	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7V6D1	3.1e-61	91.73	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BG66	3.1e-61	91.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T975	9.0e-61	90.98	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]

BLAST of Clc03G15250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G15250.1	Clc03G15250.1	mRNA