Clc03G14120 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G14120
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationClcChr03: 25299508 .. 25301272 (+)
RNA-Seq ExpressionClc03G14120
SyntenyClc03G14120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAACAAAGAGAAAGAAATGAAGGAGGTGATGTTTGCATGCGGAAATCAAGAAAATGAATTTGCAATAAGTTTTCTTTTGGTTTTTCGTCTGCCATCCGTTTTTAGAATCAACAAGTGGAGTTCTATTGCTTCACACGTGTAGTCACAATTAGTTTACAATTATAATTGCAGCCAGAAGGAACATGGAAAGGTAGATTGATATTGGAGATGAAGCATTTGTCTATGCAGAAACCCTAGCTGCAAATAGTGAGAAGGCCATGAAAGCAAACACTGAGGATAAAGAAGACTAGGTGATTGACTCAGGTTGTACCTTTCACATGGCTTCTAATAAGAAGTGGTTTATACCCTATGAGAAATGGGATGGAGGCTCAGTGTTCATAGGAAATAACCATGGATGTAAAGTTGTGGGAATTGGGATTGTAATGCTTATGTTGCAAGACAATAGAGAAATATTGCTGAAGAATGTAAGGCATGTTCCAGAGATTAGGAGAAATCTAATTTATGTAGGAATGCTAGATGACATTAGATGTGTGATTGCTGTGAGTTGAGGATCTCTTAAGGTCCTAAAAGACACTAGAACAGTACTTGAAGCACCTAAGCAAAATGACTTGTATATTATCAAGATGGTTTAGTTTAAGGACCATGTGTTGATAGCTCAAAGTGGAAAATATGAAGAACTTGAGCTATGACATAGGAGATTATCTCACATCAGTGAAGGGGGACTGAAAGAACTTCTTAATTAGGGAATAATCAAGTCATGAGGTACTAAACGACTTAGCTTTTGTGAATACTGTGTATATGGAAAGTCTAAGAGACTTAAATTCACAAAAGGAGAGCACACTACGAAGGAGATCCTTGGATATATTCCTGCTTACCTATGGGTTCCTTCAAGGACACCATCATGTAGTGGCTCTAGATATTGTTTTGTGCCTGATTGATGACTATTCAAGAAAGGTATGGACTTGCGTTCTCAAATCAAAGGATCAGAGCTTCGAGAAGTTTAAAGAGTGGAAGGTGACAGTTGAAAATCAAACTGATAAGAGGGTAAAGCACTTGAGGACAGATAATGGTTTAGAGTTCCTTTGGGGATCCTTCAATCAATTTTGCATAAACAGTGGCATTACCAGACATAGAACTATACCGTACACACCACGACAGAATGGTGTAGCTGAACAAATGAATAGAACAATCACGGAGAGAGTAGGGTATATGCTATTTGAAGCTAACTCCTACACTTTTTGGGTTGAAGCAGTAGCTGCACCAACTTATACCATCAATAGGAGTCCCTGTACTACTATTGATCTAAAAACCCCTAAGGAAATGTGGAGTGGAAAAACACCAGACCTATCTAACTTGAAAGTGTTTGGTTGTGTGGCCTATGTACACACCAAGCAAGGGAAATTAGAATTAAGAGCACTGAAATGCATGGTTTTGGGCTATCCAAAAGGCACAAAAGGGTATAAGTTGTGGGATTTCAACTCAAACAAGAGTATTGTGAGCAGAGATGTTATTTTTTTTAGAGAAAGAGTTTTATATGTCAAAGAATTCGGAGACAACAGAAGAAAAAAATCTAATTGAAGCACCTAACTCTAAGAATAAGGTGGAGCTAATTAAGAAAGGTAAAGAAAAGGTCGGAGTTGACCAACTAGAGACTAAAATAGAAGAAGTTTTAGAGAAAAACACAGCTAATGGAGAGGATCAGCAGGAAGATGAGCAACTTAGTGAAGATCTTTCCAATTACACATTGTCAAGAGACAGATAG

mRNA sequence

AGAAAACAAAGAGAAAGAAATGAAGGAGGTGATGTTTGCATGCGGAAATCAAGAAAATGAATTTGCAATAAGTTTTCTTTTGGTTTTTCGTCTGCCATCCGTTTTTAGAATCAACAAGTGGAGTTCTATTGCTTCACACGTGTAGTCACAATTAGTTTACAATTATAATTGCAGCCAGAAGGAACATGGAAAGGTAGATTGATATTGGAGATGAAGCATTTGTCTATGCAGAAACCCTAGCTGCAAATAGTGAGAAGGCCATGAAAGCAAACACTGAGGATAAAGAAGACTAGGTGATTGACTCAGGTTGTACCTTTCACATGGCTTCTAATAAGAAGTGGTTTATACCCTATGAGAAATGGGATGGAGGCTCAGTGTTCATAGGAAATAACCATGGATGTAAAGTTGTGGGAATTGGGATTGTAATGCTTATGTTGCAAGACAATAGAGAAATATTGCTGAAGAATGTAAGGCATGTTCCAGAGATTAGGAGAAATCTAATTTATGTAGGAATGCTAGATGACATTAGATGTGTGATTGCTGAGAGCACACTACGAAGGAGATCCTTGGATATATTCCTGCTTACCTATGGGTTCCTTCAAGGACACCATCATGTAGTGGCTCTAGATATTGTTTTGTGCCTGATTGATGACTATTCAAGAAAGGTATGGACTTGCGTTCTCAAATCAAAGGATCAGAGCTTCGAGAAGTTTAAAGAGTGGAAGGTGACAGTTGAAAATCAAACTGATAAGAGGGTAAAGCACTTGAGGACAGATAATGGTTTAGAGTTCCTTTGGGGATCCTTCAATCAATTTTGCATAAACAGTGGCATTACCAGACATAGAACTATACCGTACACACCACGACAGAATGGTGTAGCTGAACAAATGAATAGAACAATCACGGAGAGAGTAGGGTATATGCTATTTGAAGCTAACTCCTACACTTTTTGGGTTGAAGCAGTAGCTGCACCAACTTATACCATCAATAGGAGTCCCTGTACTACTATTGATCTAAAAACCCCTAAGGAAATGTGGAGTGGAAAAACACCAGACCTATCTAACTTGAAAGTGTTTGGTTGTGTGGCCTATGTACACACCAAGCAAGGGAAATTAGAATTAAGAGCACTGAAATGCATGGTTTTGGGCTATCCAAAAGGCACAAAAGGGTATAAGTTGTGGGATTTCAACTCAAACAAGACACCTAACTCTAAGAATAAGGTGGAGCTAATTAAGAAAGGTAAAGAAAAGGTCGGAGTTGACCAACTAGAGACTAAAATAGAAGAAGTTTTAGAGAAAAACACAGCTAATGGAGAGGATCAGCAGGAAGATGAGCAACTTAGTGAAGATCTTTCCAATTACACATTGTCAAGAGACAGATAG

Coding sequence (CDS)

ATGGCTTCTAATAAGAAGTGGTTTATACCCTATGAGAAATGGGATGGAGGCTCAGTGTTCATAGGAAATAACCATGGATGTAAAGTTGTGGGAATTGGGATTGTAATGCTTATGTTGCAAGACAATAGAGAAATATTGCTGAAGAATGTAAGGCATGTTCCAGAGATTAGGAGAAATCTAATTTATGTAGGAATGCTAGATGACATTAGATGTGTGATTGCTGAGAGCACACTACGAAGGAGATCCTTGGATATATTCCTGCTTACCTATGGGTTCCTTCAAGGACACCATCATGTAGTGGCTCTAGATATTGTTTTGTGCCTGATTGATGACTATTCAAGAAAGGTATGGACTTGCGTTCTCAAATCAAAGGATCAGAGCTTCGAGAAGTTTAAAGAGTGGAAGGTGACAGTTGAAAATCAAACTGATAAGAGGGTAAAGCACTTGAGGACAGATAATGGTTTAGAGTTCCTTTGGGGATCCTTCAATCAATTTTGCATAAACAGTGGCATTACCAGACATAGAACTATACCGTACACACCACGACAGAATGGTGTAGCTGAACAAATGAATAGAACAATCACGGAGAGAGTAGGGTATATGCTATTTGAAGCTAACTCCTACACTTTTTGGGTTGAAGCAGTAGCTGCACCAACTTATACCATCAATAGGAGTCCCTGTACTACTATTGATCTAAAAACCCCTAAGGAAATGTGGAGTGGAAAAACACCAGACCTATCTAACTTGAAAGTGTTTGGTTGTGTGGCCTATGTACACACCAAGCAAGGGAAATTAGAATTAAGAGCACTGAAATGCATGGTTTTGGGCTATCCAAAAGGCACAAAAGGGTATAAGTTGTGGGATTTCAACTCAAACAAGACACCTAACTCTAAGAATAAGGTGGAGCTAATTAAGAAAGGTAAAGAAAAGGTCGGAGTTGACCAACTAGAGACTAAAATAGAAGAAGTTTTAGAGAAAAACACAGCTAATGGAGAGGATCAGCAGGAAGATGAGCAACTTAGTGAAGATCTTTCCAATTACACATTGTCAAGAGACAGATAG

Protein sequence

MASNKKWFIPYEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNLIYVGMLDDIRCVIAESTLRRRSLDIFLLTYGFLQGHHHVVALDIVLCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDKRVKHLRTDNGLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFEANSYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQGKLELRALKCMVLGYPKGTKGYKLWDFNSNKTPNSKNKVELIKKGKEKVGVDQLETKIEEVLEKNTANGEDQQEDEQLSEDLSNYTLSRDR
Homology
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BLAST of Clc03G14120 vs. NCBI nr
Match: KAG9447272.1 (hypothetical protein H6P81_013400 [Aristolochia fimbriata])

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-67
Identity = 142/318 (44.65%), Postives = 185/318 (58.18%), Query Frame = 0 

Query: 1   MASNKKWFIPYEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNL 60
           M S++ WF  Y+  DGG V + NN  C+ +G G V L + D     L +V +VP+++RNL
Sbjct: 188 MCSHRHWFSTYDAVDGGVVMMANNSTCRAIGKGSVRLKMHDGVIRTLTDVGYVPDLKRNL 247

Query: 61  IYVGMLDDIRCV---------------------------IAESTLRRRSLDIFLLTYGFL 120
           I +G LD I C                            +A ST  +R+       +  L
Sbjct: 248 ISLGTLDSIGCKYSAEGGVMKSTGKIDFCEHCVFGKHKRVAFSTAIQRTKRTLDYVHSDL 307

Query: 121 QGHHHVVA---LDIVLCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDKRVKHLR 180
            G   VV+      +L  IDD+SRKVW   LK+K   F  FK+WK  +E QT K++K LR
Sbjct: 308 WGPEQVVSKGGAKYLLTFIDDFSRKVWVYFLKAKSDVFTVFKQWKCMIEKQTGKQIKRLR 367

Query: 181 TDNGLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFEAN-SYT 240
           TDNGLEF  G FN+FC + GI RHRT+ +TP+QNGVAE+MNRT+ ER   ML  A     
Sbjct: 368 TDNGLEFCSGEFNKFCEDEGIVRHRTVRHTPQQNGVAERMNRTLLERARCMLSNAGLGKE 427

Query: 241 FWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQGKLELRA 288
           FW EA +   Y +NRSP TTI+ KT +E+WSG   D S+LK+FGC AY+H  +GKLE RA
Sbjct: 428 FWAEATSMACYLVNRSPSTTIECKTLEEVWSGTPADYSDLKIFGCPAYIHVNEGKLEPRA 487

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BLAST of Clc03G14120 vs. NCBI nr
Match: RVW75706.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 253.1 bits (645), Expect = 3.6e-63
Identity = 166/451 (36.81%), Postives = 219/451 (48.56%), Query Frame = 0 

Query: 1   MASNKKWFIPYEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNL 60
           M   K WF  +++ DGG V +GNN  CK++G G V +   D  E +L++VR++PE++RNL
Sbjct: 216 MCPIKAWFEDFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRYIPELKRNL 275

Query: 61  IYVGMLD-----------DIRCVIAESTLRRRSLDIFLLT-------------------- 120
           I +GMLD            +R V    T+ + ++   L T                    
Sbjct: 276 ISLGMLDKSGYTFKSEPNSLRVVRGSLTVMKGTIKNGLYTLIGQTVTGKVSTMLKEDVGT 335

Query: 121 ---------------------YGFLQG--------------------------HHHVVAL 180
                                 G L                            H     L
Sbjct: 336 TKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQYQL 395

Query: 181 DIV-------------------LCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTD 240
           D +                   L LIDDYSRKVW   LK+K ++F KFKEWK+ VE QT 
Sbjct: 396 DYIHSDLWEPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTG 455

Query: 241 KRVKHLRTDNGLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLF 300
           ++VK LRTDNGLEFL   FN FC   GI  HRT+ YTP+QNG+AE+MNRTI ERV  ML 
Sbjct: 456 RKVKKLRTDNGLEFLSNDFNSFCQKEGIATHRTVRYTPQQNGLAERMNRTILERVRCMLS 515

Query: 301 EAN-SYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQ 354
            +  S  FW EA     + INRSP + +  KTP+E W+GK  D  +LKVFGC AYVHTK 
Sbjct: 516 SSGLSKVFWAEAAETAIHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKT 575

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BLAST of Clc03G14120 vs. NCBI nr
Match: CAN61630.1 (hypothetical protein VITISV_003191 [Vitis vinifera])

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-62
Identity = 171/459 (37.25%), Postives = 230/459 (50.11%), Query Frame = 0 

Query: 11  YEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNLIYVGMLD--- 70
           +++ DGG V +GNN  CK++G G V +   D  E +L++VR++PE++RNLI +GMLD   
Sbjct: 281 FKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRYIPELKRNLISLGMLDKSG 340

Query: 71  --------DIRCVIAESTLRRRSLDIFLLT------------------------------ 130
                    +R      T+ + ++   L T                              
Sbjct: 341 YTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTGKVSTVLKEDVGTTKLWHQRLGH 400

Query: 131 -----------YGFLQGH--------HHVV------------------ALDIV------- 190
                       G L  +         H V                   LD +       
Sbjct: 401 ISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDLWGP 460

Query: 191 ------------LCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDKRVKHLRTDN 250
                       L LIDDYSRKVW   LK+K ++F KFKEWK+ VE QT ++VK LRTDN
Sbjct: 461 SRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDN 520

Query: 251 GLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFEAN-SYTFWV 310
           GLEFL   FN  C   GI RHRT+ YTP+QNG+AE+MNRTI ERV  ML  +  S  FW 
Sbjct: 521 GLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWA 580

Query: 311 EAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQGKLELRALKC 354
           EA     + INRSP + +  KTP+E W+GK  D  +LKVFGC AYVHTK  KLE RA+KC
Sbjct: 581 EAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKC 640

[Close]
BLAST of Clc03G14120 vs. NCBI nr
Match: RZB51639.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja])

HSP 1 Score: 250.4 bits (638), Expect = 2.4e-62
Identity = 160/450 (35.56%), Postives = 221/450 (49.11%), Query Frame = 0 

Query: 5   KKWFIPYEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNLIYVG 64
           K +F   E    G V +G+N+ CKV GIG V L + DNRE LLKNVR++PE++RNLI + 
Sbjct: 288 KDYFETLELKPTGVVLLGDNYPCKVQGIGTVRLKMFDNREYLLKNVRYIPELKRNLISIN 347

Query: 65  MLDDI----------------RCVIAESTLRRRSLDIFLLTYGFLQGHHHVVALDIV--- 124
           M DD+                  +IA+   + +S  +F+L    + GH  V +  ++   
Sbjct: 348 MFDDLGYATRISNGVLKISNGSLIIAKGN-KNKSNGLFILEGSTIIGHALVASNTLIDKT 407

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 408 KLWHLRLSHVSERGLHELEKQNLLGGDKLDKLEFCDHCVLGKSHRISFGTGIHVSSRPFE 467

Query: 185 ---------------------LCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDK 244
                                L +IDD+SR+VW  VLK+K ++F+KF+EW   V NQ   
Sbjct: 468 YVHSDLWGPSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSKAFQKFREWHTLVGNQLGT 527

Query: 245 RVKHLRTDNGLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFE 304
           ++K LRT+NGLEF+   FN+FC   GI RH+T+P+TP+QNG+AE+MNRTI ERV  ML  
Sbjct: 528 KLKVLRTNNGLEFVSEQFNEFCREIGIKRHKTVPHTPQQNGLAERMNRTILERVRCMLLS 587

Query: 305 AN-SYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQG 354
           A    TFW EA    TY IN+ P + +D KTP E WSG+ P+ S LKVFG +A+ H KQG
Sbjct: 588 AGLPKTFWGEAANTTTYLINKCPSSALDFKTPMEAWSGEPPNYSGLKVFGSLAFAHVKQG 647

[Close]
BLAST of Clc03G14120 vs. NCBI nr
Match: KAG8491711.1 (hypothetical protein CXB51_015157 [Gossypium anomalum])

HSP 1 Score: 249.6 bits (636), Expect = 4.0e-62
Identity = 139/357 (38.94%), Postives = 188/357 (52.66%), Query Frame = 0 

Query: 1   MASNKKWFIPYEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNL 60
           M+ N+ WF  YE    G V +GNN  CK+ G+G + + + D     L +VR+VPE++RNL
Sbjct: 311 MSPNRDWFTTYETVSEGVVLMGNNASCKIAGVGTIKVKMFDGVVRTLSDVRYVPELKRNL 370

Query: 61  IYVGMLDD--IRCVIAESTLR------------RRSLDIFLL------------------ 120
           I +  LD    R       L+            R++  +++L                  
Sbjct: 371 ISLSTLDSKGYRYTAESGVLKISKGSLVVMKGQRKTAKLYVLQGSTVTGDAAVASSSLSD 430

Query: 121 -----------------------TYGFLQGHHHVVALDIVLCLIDDYSRKVWTCVLKSKD 180
                                    G L G       + +L  IDD+SRKVW   LK K 
Sbjct: 431 DDITKLWHMRLGHMSENGMVELSKRGLLDGVPSRGGANYMLTFIDDFSRKVWAFFLKQKS 490

Query: 181 QSFEKFKEWKVTVENQTDKRVKHLRTDNGLEFLWGSFNQFCINSGITRHRTIPYTPRQNG 240
             F  FK WK+ +E QT K++K+LRTDNGLEF    FN+ C + GI RH T+ +TP+QNG
Sbjct: 491 DVFSAFKSWKIMIEKQTGKQIKYLRTDNGLEFYSDEFNRLCKSEGIVRHLTVRHTPQQNG 550

Query: 241 VAEQMNRTITERVGYMLFEAN-SYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTP 300
           VAE+MNRTI E+V  ML  AN   +FW EA +   + INRSP   I+ KTP+E+WSG   
Sbjct: 551 VAERMNRTIMEKVRCMLSNANLPKSFWAEAASTACFLINRSPSVAIEKKTPQEVWSGNPA 610

Query: 301 DLSNLKVFGCVAYVHTKQGKLELRALKCMVLGYPKGTKGYKLWDFNSNKTPNSKNKV 302
           + S+LK+FGC AY H   GKLE R++KC+ LGY  G KGYKLW   + K   S++ V
Sbjct: 611 NYSDLKIFGCPAYAHVNNGKLEPRSIKCVFLGYKAGVKGYKLWCPENRKVVISRDVV 667

[Close]
BLAST of Clc03G14120 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-38
Identity = 101/299 (33.78%), Postives = 157/299 (52.51%), Query Frame = 0 

Query: 73  IAESTLRRRSLDIFLLTYGFLQGHHHVVAL---DIVLCLIDDYSRKVWTCVLKSKDQSFE 132
           ++  T   R L+I  L Y  + G   + ++      +  IDD SRK+W  +LK+KDQ F+
Sbjct: 468 VSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQ 527

Query: 133 KFKEWKVTVENQTDKRVKHLRTDNGLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQ 192
            F+++   VE +T +++K LR+DNG E+    F ++C + GI   +T+P TP+ NGVAE+
Sbjct: 528 VFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAER 587

Query: 193 MNRTITERVGYMLFEAN-SYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSN 252
           MNRTI E+V  ML  A    +FW EAV    Y INRSP   +  + P+ +W+ K    S+
Sbjct: 588 MNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSH 647

Query: 253 LKVFGCVAYVHT---KQGKLELRALKCMVLGYPKGTKGYKLWD-------------FNSN 312
           LKVFGC A+ H    ++ KL+ +++ C+ +GY     GY+LWD             F  +
Sbjct: 648 LKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRES 707

Query: 313 KTPNSKNKVELIKKG---------KEKVGVDQLETKIEEVLEKNTANGEDQQEDEQLSE 343
           +   + +  E +K G                  E+  +EV E+    GE  ++ EQL E
Sbjct: 708 EVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDE 766


HSP 2 Score: 44.3 bits (103), Expect = 3.4e-03
Identity = 22/54 (40.74%), Postives = 32/54 (59.26%), Query Frame = 0 

Query: 8   FIPYEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNLI 62
           F  Y   D G+V +GN    K+ GIG + +       ++LK+VRHVP++R NLI
Sbjct: 311 FCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLI 364

[Close]
BLAST of Clc03G14120 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 134.0 bits (336), Expect = 3.2e-30
Identity = 84/231 (36.36%), Postives = 124/231 (53.68%), Query Frame = 0 

Query: 109 IDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDKRVKHLRTDNGLEFLWGSFNQFCIN 168
           +D ++    T ++K K   F  F+++    E   + +V +L  DNG E+L     QFC+ 
Sbjct: 507 VDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVK 566

Query: 169 SGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFEAN-SYTFWVEAVAAPTYTINRSPC 228
            GI+ H T+P+TP+ NGV+E+M RTITE+   M+  A    +FW EAV   TY INR P 
Sbjct: 567 KGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPS 626

Query: 229 TTI--DLKTPKEMWSGKTPDLSNLKVFGCVAYVH--TKQGKLELRALKCMVLGYPKGTKG 288
             +    KTP EMW  K P L +L+VFG   YVH   KQGK + ++ K + +GY     G
Sbjct: 627 RALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYE--PNG 686

Query: 289 YKLWDFNSNKTPNSKNKVELIKKGKEKVGVDQLETKIEEVLEKNTANGEDQ 335
           +KLWD  + K   +++ V       E   V+    K E V  K++   E++
Sbjct: 687 FKLWDAVNEKFIVARDVVV-----DETNMVNSRAVKFETVFLKDSKESENK 730

[Close]
BLAST of Clc03G14120 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-19
Identity = 62/182 (34.07%), Postives = 94/182 (51.65%), Query Frame = 0 

Query: 109 IDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDKRVKHLRTDNGLEF--LWGSFNQFC 168
           +D ++R  W   LK K Q  E F  +K  +EN+   R+    +DNG EF  LW  F+Q  
Sbjct: 549 VDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQ-- 608

Query: 169 INSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFEAN-SYTFWVEAVAAPTYTINRS 228
              GI+   + P+TP  NG++E+ +R I E    +L  A+   T+W  A A   Y INR 
Sbjct: 609 --HGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRL 668

Query: 229 PCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTK---QGKLELRALKCMVLGYPKGTK 285
           P   + L++P +   G +P+   L+VFGC  Y   +   Q KL+ ++ +C+ LGY     
Sbjct: 669 PTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQS 726

[Close]
BLAST of Clc03G14120 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-18
Identity = 58/180 (32.22%), Postives = 91/180 (50.56%), Query Frame = 0 

Query: 109 IDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDKRVKHLRTDNGLEFLWGSFNQFCIN 168
           +D ++R  W   LK K Q  + F  +K  VEN+   R+  L +DNG EF+      +   
Sbjct: 528 VDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLRDYLSQ 587

Query: 169 SGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFEAN-SYTFWVEAVAAPTYTINRSPC 228
            GI+   + P+TP  NG++E+ +R I E    +L  A+   T+W  A +   Y INR P 
Sbjct: 588 HGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPT 647

Query: 229 TTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTK---QGKLELRALKCMVLGYPKGTKGY 285
             + L++P +   G+ P+   LKVFGC  Y   +   + KLE ++ +C  +GY      Y
Sbjct: 648 PLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAY 705

[Close]
BLAST of Clc03G14120 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.8e-11
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 190 MNRTITERVGYMLFEAN-SYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSN 249
           MNRTI E+V  ML E     TF  +A     + IN+ P T I+   P E+W    P  S 
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 250 LKVFGCVAYVHTKQGKLELRALK 272
           L+ FGCVAY+H  +GKL+ RA K
Sbjct: 61  LRRFGCVAYIHCDEGKLKPRAKK 83

[Close]
BLAST of Clc03G14120 vs. ExPASy TrEMBL
Match: A0A438GU19 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2265 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.8e-63
Identity = 166/451 (36.81%), Postives = 219/451 (48.56%), Query Frame = 0 

Query: 1   MASNKKWFIPYEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNL 60
           M   K WF  +++ DGG V +GNN  CK++G G V +   D  E +L++VR++PE++RNL
Sbjct: 216 MCPIKAWFEDFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRYIPELKRNL 275

Query: 61  IYVGMLD-----------DIRCVIAESTLRRRSLDIFLLT-------------------- 120
           I +GMLD            +R V    T+ + ++   L T                    
Sbjct: 276 ISLGMLDKSGYTFKSEPNSLRVVRGSLTVMKGTIKNGLYTLIGQTVTGKVSTMLKEDVGT 335

Query: 121 ---------------------YGFLQG--------------------------HHHVVAL 180
                                 G L                            H     L
Sbjct: 336 TKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQYQL 395

Query: 181 DIV-------------------LCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTD 240
           D +                   L LIDDYSRKVW   LK+K ++F KFKEWK+ VE QT 
Sbjct: 396 DYIHSDLWEPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTG 455

Query: 241 KRVKHLRTDNGLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLF 300
           ++VK LRTDNGLEFL   FN FC   GI  HRT+ YTP+QNG+AE+MNRTI ERV  ML 
Sbjct: 456 RKVKKLRTDNGLEFLSNDFNSFCQKEGIATHRTVRYTPQQNGLAERMNRTILERVRCMLS 515

Query: 301 EAN-SYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQ 354
            +  S  FW EA     + INRSP + +  KTP+E W+GK  D  +LKVFGC AYVHTK 
Sbjct: 516 SSGLSKVFWAEAAETAIHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKT 575

[Close]
BLAST of Clc03G14120 vs. ExPASy TrEMBL
Match: A5BPC1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003191 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.1e-63
Identity = 171/459 (37.25%), Postives = 230/459 (50.11%), Query Frame = 0 

Query: 11  YEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNLIYVGMLD--- 70
           +++ DGG V +GNN  CK++G G V +   D  E +L++VR++PE++RNLI +GMLD   
Sbjct: 281 FKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRYIPELKRNLISLGMLDKSG 340

Query: 71  --------DIRCVIAESTLRRRSLDIFLLT------------------------------ 130
                    +R      T+ + ++   L T                              
Sbjct: 341 YTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTGKVSTVLKEDVGTTKLWHQRLGH 400

Query: 131 -----------YGFLQGH--------HHVV------------------ALDIV------- 190
                       G L  +         H V                   LD +       
Sbjct: 401 ISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDLWGP 460

Query: 191 ------------LCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDKRVKHLRTDN 250
                       L LIDDYSRKVW   LK+K ++F KFKEWK+ VE QT ++VK LRTDN
Sbjct: 461 SRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDN 520

Query: 251 GLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFEAN-SYTFWV 310
           GLEFL   FN  C   GI RHRT+ YTP+QNG+AE+MNRTI ERV  ML  +  S  FW 
Sbjct: 521 GLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWA 580

Query: 311 EAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQGKLELRALKC 354
           EA     + INRSP + +  KTP+E W+GK  D  +LKVFGC AYVHTK  KLE RA+KC
Sbjct: 581 EAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKC 640

[Close]
BLAST of Clc03G14120 vs. ExPASy TrEMBL
Match: A0A445FRZ0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3848 GN=D0Y65_048175 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 160/450 (35.56%), Postives = 221/450 (49.11%), Query Frame = 0 

Query: 5   KKWFIPYEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNLIYVG 64
           K +F   E    G V +G+N+ CKV GIG V L + DNRE LLKNVR++PE++RNLI + 
Sbjct: 288 KDYFETLELKPTGVVLLGDNYPCKVQGIGTVRLKMFDNREYLLKNVRYIPELKRNLISIN 347

Query: 65  MLDDI----------------RCVIAESTLRRRSLDIFLLTYGFLQGHHHVVALDIV--- 124
           M DD+                  +IA+   + +S  +F+L    + GH  V +  ++   
Sbjct: 348 MFDDLGYATRISNGVLKISNGSLIIAKGN-KNKSNGLFILEGSTIIGHALVASNTLIDKT 407

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 408 KLWHLRLSHVSERGLHELEKQNLLGGDKLDKLEFCDHCVLGKSHRISFGTGIHVSSRPFE 467

Query: 185 ---------------------LCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDK 244
                                L +IDD+SR+VW  VLK+K ++F+KF+EW   V NQ   
Sbjct: 468 YVHSDLWGPSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSKAFQKFREWHTLVGNQLGT 527

Query: 245 RVKHLRTDNGLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFE 304
           ++K LRT+NGLEF+   FN+FC   GI RH+T+P+TP+QNG+AE+MNRTI ERV  ML  
Sbjct: 528 KLKVLRTNNGLEFVSEQFNEFCREIGIKRHKTVPHTPQQNGLAERMNRTILERVRCMLLS 587

Query: 305 AN-SYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQG 354
           A    TFW EA    TY IN+ P + +D KTP E WSG+ P+ S LKVFG +A+ H KQG
Sbjct: 588 AGLPKTFWGEAANTTTYLINKCPSSALDFKTPMEAWSGEPPNYSGLKVFGSLAFAHVKQG 647

[Close]
BLAST of Clc03G14120 vs. ExPASy TrEMBL
Match: A0A2I0WB13 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013638 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-62
Identity = 165/456 (36.18%), Postives = 226/456 (49.56%), Query Frame = 0 

Query: 19  VFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNLIYVGMLDDIRCVI-AEST 78
           + +GNN  C VVGIG + + + D    +LK+VRHVP+++RNLI +G LDD   +  +E  
Sbjct: 258 LLLGNNKACDVVGIGSIAVKMHDGHVRILKDVRHVPDLKRNLISLGTLDDSGYIFRSERG 317

Query: 79  LRRRSLDIFLLTYGF------------LQGHHHVVA------------------------ 138
           L R S    ++  G             L G  HV A                        
Sbjct: 318 LLRISKGALVIMKGIKRNGLYVLQGATLVGETHVTAKQNLDKTKLWHQRLGHLSDRGLIE 377

Query: 139 -----------------------------------------LDIV--------------- 198
                                                    LD +               
Sbjct: 378 LQKQGLFGNDSIAKIDFCESCIIGKSHRLSFKLSTHRAEGILDYIHSDLWGPARVATHGG 437

Query: 199 ----LCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDKRVKHLRTDNGLEFLWGS 258
               L  IDDYSRKVW  +LKSKD++F KF EWK  VENQ ++++K LRTDNGLEF   S
Sbjct: 438 NRYFLSFIDDYSRKVWIFLLKSKDETFSKFLEWKSMVENQKNRKLKVLRTDNGLEFCNES 497

Query: 259 FNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFEAN-SYTFWVEAVAAPTY 318
           FN+FC +SGI RH+T+ +TP+QNG+AE+MNRT+ +RV  +LF +  S  FW EA++   Y
Sbjct: 498 FNKFCSDSGIVRHKTVSHTPQQNGLAERMNRTLLDRVRCLLFSSGLSKFFWGEALSTACY 557

Query: 319 TINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQGKLELRALKCMVLGYPKG 354
            +NR+P + I+ KTP+E+W GK P L++L+VFGC+AY H  +GKLE R++KC+ LGYP G
Sbjct: 558 LVNRTPSSAINFKTPQELWKGKPPSLTHLRVFGCLAYPHQNKGKLEPRSIKCVFLGYPTG 617

[Close]
BLAST of Clc03G14120 vs. ExPASy TrEMBL
Match: A0A2Z6P9R0 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_401910 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.3e-62
Identity = 160/460 (34.78%), Postives = 220/460 (47.83%), Query Frame = 0 

Query: 5   KKWFIPYEKWDGGSVFIGNNHGCKVVGIGIVMLMLQDNREILLKNVRHVPEIRRNLIYVG 64
           K++F   E  +GG V +GNN  CKV G G + L + D+R+ LLKNVR++PE++RNLI + 
Sbjct: 127 KEYFETLELKEGGVVRLGNNKACKVQGTGSIRLKMYDDRDFLLKNVRYIPELKRNLISIS 186

Query: 65  MLDDI-RCVIAESTLRRRSLDIFLLTYGFLQ----------------------------- 124
           M D++  C   E  + R S    ++  G                                
Sbjct: 187 MFDNLGYCTRIERGVMRISHGALVIAKGSKMNGLYILKGSTVISNALVTSVENADITKLW 246

Query: 125 -------------------------------------GHHHVVALDI------------- 184
                                                G  H V   +             
Sbjct: 247 HLRLGHVSERGLVELAKQGLLGQEKLNKLDFCDNCTLGKQHKVKFGVGVHKSSRPFEYVH 306

Query: 185 -----------------VLCLIDDYSRKVWTCVLKSKDQSFEKFKEWKVTVENQTDKRVK 244
                             L +IDDYSR+VW  ++K+K   FEKFKEW   +ENQ   ++K
Sbjct: 307 SDLWGPASVPTHGGGSYFLSIIDDYSRRVWVHIIKNKSDVFEKFKEWHTLIENQIGTKLK 366

Query: 245 HLRTDNGLEFLWGSFNQFCINSGITRHRTIPYTPRQNGVAEQMNRTITERVGYMLFEAN- 304
            LRTDNGLEF+   FN+FC   GI RHRT+ YTP+QNG+AE+MNRT+ ERV YML  A  
Sbjct: 367 VLRTDNGLEFVSEQFNEFCRKKGIKRHRTVAYTPQQNGLAERMNRTLLERVRYMLLGAGL 426

Query: 305 SYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSNLKVFGCVAYVHTKQGKLE 354
             +FW EAV    Y INR P   IDLKTP E+WSGK  D S LK+FG +A+ H KQ KL+
Sbjct: 427 PKSFWGEAVNTAAYLINRCPSAGIDLKTPMEVWSGKPADYSKLKIFGALAFAHVKQDKLD 486

[Close]
BLAST of Clc03G14120 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 6.9e-12
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 190 MNRTITERVGYMLFEAN-SYTFWVEAVAAPTYTINRSPCTTIDLKTPKEMWSGKTPDLSN 249
           MNRTI E+V  ML E     TF  +A     + IN+ P T I+   P E+W    P  S 
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 250 LKVFGCVAYVHTKQGKLELRALK 272
           L+ FGCVAY+H  +GKL+ RA K
Sbjct: 61  LRRFGCVAYIHCDEGKLKPRAKK 83

The following BLAST results are available for this feature:
BLAST of Clc03G14120 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG9447272.11.4e-6744.65hypothetical protein H6P81_013400 [Aristolochia fimbriata][more]
RVW75706.13.6e-6336.81Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
CAN61630.11.1e-6237.25hypothetical protein VITISV_003191 [Vitis vinifera][more]
RZB51639.12.4e-6235.56Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja][more]
KAG8491711.14.0e-6238.94hypothetical protein CXB51_015157 [Gossypium anomalum][more]
BLAST of Clc03G14120 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109781.1e-3833.78Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.2e-3036.36Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW21.1e-1934.07Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.3e-1832.22Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P925129.8e-1144.58Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Clc03G14120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438GU191.8e-6336.81Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5BPC15.1e-6337.25Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003191 PE=4 SV=1[more]
A0A445FRZ01.1e-6235.56Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3... [more]
A0A2I0WB132.5e-6236.18Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena... [more]
A0A2Z6P9R04.3e-6234.78Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_401910 PE=4 SV... [more]
BLAST of Clc03G14120 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00710.16.9e-1244.58Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 105..181
e-value: 5.3E-8
score: 33.1
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 73..243
score: 18.212923
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 89..261
e-value: 3.0E-29
score: 103.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..353
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 103..252

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G14120.1Clc03G14120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding