Clc03G13610 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G13610
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein RALF-like 9
Location	ClcChr03: 23967462 .. 23968219 (+)
RNA-Seq Expression	Clc03G13610
Synteny	Clc03G13610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAGCTATTTCATTTTTAAATTTTGTTCTAGTTTTTGTTCAAAAAAATCTTCATGACAAAGGGAAGCATATCTATTTCAATTGGGATTCTGTTGGTTAGTTTTTGCATGATTGAGATAACAACAACAACACGATATATTGGTTATGGTCCTCTAAGAACAAATGTTAACCCTGGATGTAGCCCAAAACATCCACAACTTTGTAAAACAATTTCTATCAATCCATATCAAAGAGGTTGCAATGCAATCAATCATTGTAGAGGAGAAAATTATTTTTTCGATCGTGACGAGAAAATTATTTCTGGCAAGGATGTCATTTTAGATCATCGTGACAAGAAAATTATTTCTGGCAAGGATGCCATTTTAGATCGTGACGAGAAAATTGTTTCTGGCAAGGATGCCATTTTAGATCGTGACGAAAAAATTATTTCTGGCAAGGATGCATCGAGTAGCACAACCATGAGTCTCAAGGCAGAACATATATTTCCTTGAATTGTGTACAAATTATTAGATTATTCATTCTTTTTGTTTTTTGTTTTTTGTTTTTTTTTTGTTTTTGTTTTTTTAGTACACATTATTCATTCTTTTTAATCACATCTTCATTTAATAATGGATGTGATTCATAATTCTTTTAATACATGTTTATAGCAATAATGGATGTGATTCATAATTCGTTTATACATTTTTATAGCATCATTTTTTTTTCATTGTAATTTCTATTGTGTTCTCATATTTTCTATAACTTTATATGTTTTTCTC

mRNA sequence

TTAAGCTATTTCATTTTTAAATTTTGTTCTAGTTTTTGTTCAAAAAAATCTTCATGACAAAGGGAAGCATATCTATTTCAATTGGGATTCTGTTGGTTAGTTTTTGCATGATTGAGATAACAACAACAACACGATATATTGGTTATGGTCCTCTAAGAACAAATGTTAACCCTGGATGTAGCCCAAAACATCCACAACTTTGTAAAACAATTTCTATCAATCCATATCAAAGAGGTTGCAATGCAATCAATCATTGTAGAGGAGAAAATTATTTTTTCGATCGTGACGAGAAAATTATTTCTGGCAAGGATGTCATTTTAGATCATCGTGACAAGAAAATTATTTCTGGCAAGGATGCCATTTTAGATCGTGACGAGAAAATTGTTTCTGGCAAGGATGCCATTTTAGATCGTGACGAAAAAATTATTTCTGGCAAGGATGCATCGAGTAGCACAACCATGAGTCTCAAGGCAGAACATATATTTCCTTGAATTGTGTACAAATTATTAGATTATTCATTCTTTTTGTTTTTTGTTTTTTGTTTTTTTTTTGTTTTTGTTTTTTTAGTACACATTATTCATTCTTTTTAATCACATCTTCATTTAATAATGGATGTGATTCATAATTCTTTTAATACATGTTTATAGCAATAATGGATGTGATTCATAATTCGTTTATACATTTTTATAGCATCATTTTTTTTTCATTGTAATTTCTATTGTGTTCTCATATTTTCTATAACTTTATATGTTTTTCTC

Coding sequence (CDS)

ATGACAAAGGGAAGCATATCTATTTCAATTGGGATTCTGTTGGTTAGTTTTTGCATGATTGAGATAACAACAACAACACGATATATTGGTTATGGTCCTCTAAGAACAAATGTTAACCCTGGATGTAGCCCAAAACATCCACAACTTTGTAAAACAATTTCTATCAATCCATATCAAAGAGGTTGCAATGCAATCAATCATTGTAGAGGAGAAAATTATTTTTTCGATCGTGACGAGAAAATTATTTCTGGCAAGGATGTCATTTTAGATCATCGTGACAAGAAAATTATTTCTGGCAAGGATGCCATTTTAGATCGTGACGAGAAAATTGTTTCTGGCAAGGATGCCATTTTAGATCGTGACGAAAAAATTATTTCTGGCAAGGATGCATCGAGTAGCACAACCATGAGTCTCAAGGCAGAACATATATTTCCTTGA

Protein sequence

MTKGSISISIGILLVSFCMIEITTTTRYIGYGPLRTNVNPGCSPKHPQLCKTISINPYQRGCNAINHCRGENYFFDRDEKIISGKDVILDHRDKKIISGKDAILDRDEKIVSGKDAILDRDEKIISGKDASSSTTMSLKAEHIFP

Homology

[Close]

BLAST of Clc03G13610 vs. NCBI nr
Match: XP_022136918.1 (uncharacterized protein LOC111008495 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-19
Identity = 67/150 (44.67%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 3   KGSISISIGILLVSFCMIEITTTTRYIGYGPLRTNVNPGCSPKHPQLCKTISINPYQRGC 62
           KGS+ + IGILLVSF MIEIT   +YI Y  L+T+V+PGCSPKHP LCK    N YQRGC
Sbjct: 5   KGSMLVFIGILLVSFRMIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRGC 64

Query: 63  NAINHCRGENYFFDRDEKIISGKDVILDHRDKKIISG---KDAILDRDEKIVSGK---DA 122
           +AIN CR ++Y  D +EKI       +D  +   + G    D I D D++ + G    D 
Sbjct: 65  SAINRCRRDDY-IDSEEKIKGDAKNHIDDDEDDNVKGHARHDDIKDDDKEKIKGDYRGDD 124

Query: 123 ILDRDEKII---SGKDASSSTTMSLKAEHI 144
           I D +EK +   +G D   S    +K E+I
Sbjct: 125 INDDEEKTLKRGAGSDIKDSEE-KIKRENI 152

[Close]

BLAST of Clc03G13610 vs. NCBI nr
Match: XP_022159360.1 (uncharacterized protein LOC111025777 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 59/130 (45.38%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 1   MTKGSISISIGILLVSFCMIEITTTTRYIGYGPLRTNVNPGCSPKHPQLCKTISINPYQR 60
           ++KGS+ I +GILL    MI+IT  TR+I Y PLR +V+PGCSP HP+LCK  S NPY+R
Sbjct: 3   ISKGSMFIFVGILLYCMGMIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKR 62

Query: 61  GCNAINHCRGENYFFDRDEKIISG--KDVILDHRDKKIISG-KDAILDRDEKIVSG--KD 120
           GC +I+ CRG +   D  E I+ G  ++ I D + K + S  K+ ++   EKIV G  ++
Sbjct: 63  GCTSIDRCRGGSDIIDDAEMIVEGDAENKIKDSKTKILKSDTKNDLIGGAEKIVKGDAEN 122

Query: 121 AILDRDEKII 126
            + D  EKI+
Sbjct: 123 NVKDSKEKIL 132

[Close]

BLAST of Clc03G13610 vs. NCBI nr
Match: XP_022961577.1 (protein RALF-like 9 [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-15
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 1   MTKGSISISIGILLVSFCMIEITTTTRYIGYGPLRTNVNPGCSPKHPQLCKTISINPYQR 60
           M+KG++ I I +L VS  MIEIT  T YI Y PL+ N +  CSP HP LCKT   NPYQR
Sbjct: 1   MSKGTMIIFIVVLFVSINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQR 60

Query: 61  GCNAINHCRG--ENYFFDRDEKIISGKDVILDHRDKKIISGKDAILDRDE 109
           GCN I+ CRG   +   D DE+ I+  D             +D I+D DE
Sbjct: 61  GCNPIDRCRGAESDDIIDNDEEDITNND------------EEDDIVDNDE 98

[Close]

BLAST of Clc03G13610 vs. NCBI nr
Match: KAE8650705.1 (hypothetical protein Csa_010421 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-14
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1  MTKGSISISIGILLVSFCMIEITTTTRYIGYGPL-RTNVNPGCSPKHPQLCKTISINPYQ 60
          M+K    + IGILLVSF MI IT   ++I YG +   +V+PGCSP HP+LC+  S NPYQ
Sbjct: 3  MSKRMTLVFIGILLVSFDMIMITNAKKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQ 62

Query: 61 RGCNAINHCRGENYFFDRDEKIISG 85
          RGCN I+ CR  N   D +E+ I G
Sbjct: 63 RGCNRIDRCREGNDIIDAEEEHIEG 87

[Close]

BLAST of Clc03G13610 vs. NCBI nr
Match: XP_023546462.1 (protein RALF-like 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 5.9e-12
Identity = 55/134 (41.04%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 8   ISIGILLVSFCMIEITTTTRYIGYGPLRTNVNPGCSPKHPQLCKTISINPYQRGCNAINH 67
           I I +L VS  MIEIT  T YI Y PL+ N +  CSP HP LCK I  NPYQRGCN I+ 
Sbjct: 3   IFIVVLFVSINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKKIPANPYQRGCNPIDR 62

Query: 68  CRGENYFFDRDEKIISGKDVILDHRDKKIISGKDAILDRDEKIVSGKDAILDRDEKIISG 127
           CRG            +  D I+D+ +      +D I + DE     +D I+D DE    G
Sbjct: 63  CRG------------AESDDIIDNDE------EDDITNNDE-----EDDIIDNDE----G 109

Query: 128 KDASSSTTMSLKAE 142
            D +S   +S   E
Sbjct: 123 YDDASCPAISPNGE 109

[Close]

BLAST of Clc03G13610 vs. ExPASy Swiss-Prot
Match: Q3ECL0 (Protein RALF-like 9 OS=Arabidopsis thaliana OX=3702 GN=RALFL9 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.6e-06
Identity = 29/69 (42.03%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 5  SISISIGILLVSFCMIEIT--TTTRYIGYGPL-RTNVNPGCSPKHPQLCKTISINPYQRG 64
          SI + + + LV F  +  T    TRYI Y  + R +    C   HP  CK    NPYQRG
Sbjct: 6  SIKVILSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRG 65

Query: 65 CNAINHCRG 71
          C  IN CRG
Sbjct: 66 CEKINRCRG 74

[Close]

BLAST of Clc03G13610 vs. ExPASy TrEMBL
Match: A0A6J1C8U5 (uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008495 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.2e-19
Identity = 67/150 (44.67%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 3   KGSISISIGILLVSFCMIEITTTTRYIGYGPLRTNVNPGCSPKHPQLCKTISINPYQRGC 62
           KGS+ + IGILLVSF MIEIT   +YI Y  L+T+V+PGCSPKHP LCK    N YQRGC
Sbjct: 5   KGSMLVFIGILLVSFRMIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRGC 64

Query: 63  NAINHCRGENYFFDRDEKIISGKDVILDHRDKKIISG---KDAILDRDEKIVSGK---DA 122
           +AIN CR ++Y  D +EKI       +D  +   + G    D I D D++ + G    D 
Sbjct: 65  SAINRCRRDDY-IDSEEKIKGDAKNHIDDDEDDNVKGHARHDDIKDDDKEKIKGDYRGDD 124

Query: 123 ILDRDEKII---SGKDASSSTTMSLKAEHI 144
           I D +EK +   +G D   S    +K E+I
Sbjct: 125 INDDEEKTLKRGAGSDIKDSEE-KIKRENI 152

[Close]

BLAST of Clc03G13610 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-19
Identity = 59/130 (45.38%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 1   MTKGSISISIGILLVSFCMIEITTTTRYIGYGPLRTNVNPGCSPKHPQLCKTISINPYQR 60
           ++KGS+ I +GILL    MI+IT  TR+I Y PLR +V+PGCSP HP+LCK  S NPY+R
Sbjct: 3   ISKGSMFIFVGILLYCMGMIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKR 62

Query: 61  GCNAINHCRGENYFFDRDEKIISG--KDVILDHRDKKIISG-KDAILDRDEKIVSG--KD 120
           GC +I+ CRG +   D  E I+ G  ++ I D + K + S  K+ ++   EKIV G  ++
Sbjct: 63  GCTSIDRCRGGSDIIDDAEMIVEGDAENKIKDSKTKILKSDTKNDLIGGAEKIVKGDAEN 122

Query: 121 AILDRDEKII 126
            + D  EKI+
Sbjct: 123 NVKDSKEKIL 132

[Close]

BLAST of Clc03G13610 vs. ExPASy TrEMBL
Match: A0A6J1HAJ8 (protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 1   MTKGSISISIGILLVSFCMIEITTTTRYIGYGPLRTNVNPGCSPKHPQLCKTISINPYQR 60
           M+KG++ I I +L VS  MIEIT  T YI Y PL+ N +  CSP HP LCKT   NPYQR
Sbjct: 1   MSKGTMIIFIVVLFVSINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQR 60

Query: 61  GCNAINHCRG--ENYFFDRDEKIISGKDVILDHRDKKIISGKDAILDRDE 109
           GCN I+ CRG   +   D DE+ I+  D             +D I+D DE
Sbjct: 61  GCNPIDRCRGAESDDIIDNDEEDITNND------------EEDDIVDNDE 98

[Close]

BLAST of Clc03G13610 vs. ExPASy TrEMBL
Match: A0A0A0L8B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1  MTKGSISISIGILLVSFCMIEITTTTRYIGYGPL-RTNVNPGCSPKHPQLCKTISINPYQ 60
          M+K    + IGILLVSF MI IT   ++I YG +   +V+PGCSP HP+LC+  S NPYQ
Sbjct: 3  MSKRMTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQ 62

Query: 61 RGCNAINHCRGENYFFDRDEKIISG 85
          RGCN I+ CR  N   D +E+ I G
Sbjct: 63 RGCNRIDRCREGNDIIDAEEEHIEG 87

[Close]

BLAST of Clc03G13610 vs. ExPASy TrEMBL
Match: A0A6J1JNY3 (auxin-induced in root cultures protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111486187 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.1e-11
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 24  TTTRYIGYGPLRTNVNPGCSPKHPQLCKTISINPYQRGCNAINHCRGENYFFDRDEKIIS 83
           TT  +I Y  ++ +V+PGCSPKHP LCKT   N YQRGCNAIN CRG++     ++  + 
Sbjct: 221 TTKNFINYDAIKADVSPGCSPKHPNLCKTHEANSYQRGCNAINQCRGDDIINAVEKIDVK 280

Query: 84  GKDVI 89
             D+I
Sbjct: 281 HSDII 285

[Close]

BLAST of Clc03G13610 vs. TAIR 10
Match: AT1G61566.1 (ralf-like 9 )

HSP 1 Score: 52.0 bits (123), Expect = 4.7e-07
Identity = 29/69 (42.03%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 5  SISISIGILLVSFCMIEIT--TTTRYIGYGPL-RTNVNPGCSPKHPQLCKTISINPYQRG 64
          SI + + + LV F  +  T    TRYI Y  + R +    C   HP  CK    NPYQRG
Sbjct: 6  SIKVILSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRG 65

Query: 65 CNAINHCRG 71
          C  IN CRG
Sbjct: 66 CEKINRCRG 74

[Close]

BLAST of Clc03G13610 vs. TAIR 10
Match: AT1G60625.1 (RALF-like 6 )

HSP 1 Score: 42.7 bits (99), Expect = 2.9e-04
Identity = 16/46 (34.78%), Postives = 25/46 (54.35%), Query Frame = 0


Query: 28 YIGYGPLRTNVNPGCSPKHPQLCKTISINPYQRGCNAINHCRGENY 74
          YI Y  ++ ++ PGCS K+P+ C  I    Y RGC     C+ + +
Sbjct: 32 YINYNGMKGDIIPGCSSKNPKECVKIPAYSYNRGCEISTRCQRQQH 77

The following BLAST results are available for this feature:

BLAST of Clc03G13610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136918.1	6.6e-19	44.67	uncharacterized protein LOC111008495 [Momordica charantia]	[more]
XP_022159360.1	1.1e-18	45.38	uncharacterized protein LOC111025777 [Momordica charantia]	[more]
XP_022961577.1	5.7e-15	46.36	protein RALF-like 9 [Cucurbita moschata]	[more]
KAE8650705.1	4.9e-14	51.76	hypothetical protein Csa_010421 [Cucumis sativus]	[more]
XP_023546462.1	5.9e-12	41.04	protein RALF-like 9 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc03G13610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ECL0	6.6e-06	42.03	Protein RALF-like 9 OS=Arabidopsis thaliana OX=3702 GN=RALFL9 PE=3 SV=1	[more]

BLAST of Clc03G13610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8U5	3.2e-19	44.67	uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1DYH7	5.4e-19	45.38	uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1HAJ8	2.8e-15	46.36	protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1	[more]
A0A0A0L8B1	2.4e-14	51.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1	[more]
A0A6J1JNY3	7.1e-11	49.23	auxin-induced in root cultures protein 12-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Clc03G13610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61566.1	4.7e-07	42.03	ralf-like 9	[more]
AT1G60625.1	2.9e-04	34.78	RALF-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 24..70 e-value: 4.7E-9 score: 37.1
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 1..85
None	No IPR available	PANTHER	PTHR34270:SF10	SUBFAMILY NOT NAMED	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G13610.1	Clc03G13610.1	mRNA