Clc03G13370 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G13370
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	ML domain-containing protein
Location	ClcChr03: 22902110 .. 22905735 (+)
RNA-Seq Expression	Clc03G13370
Synteny	Clc03G13370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTACATCCGGTATTACTAATTTCCCTTATGAAAAAATTGATGCTATGAACAGGTGTCATTATTTTATTGGTCCATTTCGCCGGCATAATAATGTATTTTTCAATCCCTCGTCGTTGAGACTTCTTCTGTCTTCGTCTTCACTCCTTTTGTTTTAGATCGGCCGTTCCAACTCCGATCATCGACGACATCATGGACGGAGGACGCTCGTTCAATCACATCCTCTTTCTTCTCTTCGTCGTTCTCCTGCTCTTTCCGGTCATCTTTGCTGCCAAATTTGACTATTGCGGTCAGTTTCTCTATTTCAACCTTCACTTTCTTCACTTTTCTTTTTCCATCGGAAAAACCTAAGACGAATTCGCTTTCTCTGTATTGTTTAGTTTCCGATTTTTGTGATTCGAGATAAGTAAGAGACACTCCGAGGAAAAGGAATTTATGACTGTTTTGCATTCTGGATTTATACTTTTTGATCAATTGATGTCTGATTGTGGATTGGAATCAGATAGGAGAGGTAATTATCCTGTGAAGGTCGATGGACTCGAAGTATCTCCTTATCCAGTAAAGAGTGGCCAGCCTGCCACGTTCACCGTTTCAGCCTCAACTGGTAAGCGTTGGTACTTTACATGCTCCAATTTGTTTAATTCATTGTCCTTCCTGTTCTTCATTTTAATCTGCTTACTCTCACCGTACCTCGTGGCCTATGATTCATGCTTGGTAAGGATCAAGAGTATTAGTAATCTATTGATGGCTGCTTTTTATGTGCTGTTATTTTAATTTTGCCCAACACAAATTGGAGAGGATTCCTCGAGTCCTTTAACTATGGAATAATATTGAAGTGTCTGATGTGGAACTAAACCTTCTTTTCATAGCAATTGATTTACTGTCCTTTTCATATTTGAGGAAAACCTTAATAACATACATAAATCTTGTTAGATTTCTAATTACAATTTGAAGAATTTCACTATATTTCTAGTGAGAAAAAAACACAGCTTAAGCCTTGCAATGATGCAATCATCTAAACACGGATTGGGATCCATGTTTGGCCATGCATGAATTATCTCTACTCATCCGAGAAAATTATTAACTGGTCGAACAAACTAGATATGCCTTAACCCGCTTATGGAAGGACTCTGATCTATCTGCTCCAAATTTGATCTTCACATTGTTAGTGTATCAAGGAATGATTTGCACCCTAAAAGTGCAAATCTCGCACCACGTTTTTTTTTTATGGTAACTGACCTTCTTTGACTTTAAGAAATACACCCTCATTTGTAGTAGTTACATTTTGGTAGGCTTGTATACTCTTAATTTTCATGCAACTGAATTTCATTCTCAGCACTGACTCAGGGATCGTAGATTTAATGCCCAGTGACCCTGATGTAAGTTGATTATCTCATGCATCCATTGCTGTCTATTGTCTGACAAGTGACTGAGCATAGACTCCACACTTAGTTAATTCTTTTTTTGTTTTTCTTTGATATTGTGATACATTTAAGACCCTGTTTCTTGATTTCAAGTCACCACATGGGGTTCCTATCAAATTTGGATTTATTGCCCTTCAGTGTGTCTCATGCATTAATAAACATTGGTTTATCCTTGATTTCTTTCACTCACTTCAACTGCTTTCCTTTCTATTAGTTGGTGCAAATCGGTCTCCCCTTTTTTGTAACTATAGTTTTACCAATCTTATGACCAAAGGGAGAAGTATTTTGTAATTCATTGGATAGGACCTCTTTTGTAATTTCATCACATCAATGAAATTTTTGTTTCCTATAAAACAAATAAATAAATAAATTAATAATTCTGAGAGAAGTTTCTTGTTAATTTTTATTGTTCACTCCAATCCCCTGTGTTTAGTTGAGGTTTGATTTTACGTTCACTCTTCCTAGTGAAAGCCCCTTTCTTAACAAGGAATTGGTTGCCATGTGACCAAGGATCAATGACACTCTTCTTAGACAACGACAAACCACATATGAAATGCTTGGATGGATGCATCTGATTTATGTGTATTATAATTTAAAAATTAAATTGAAAATGTACATTGTGTATGATTATTAGACTTTGATGAAGATCAGAATAATGGAAGTGAAACTTTAGTTTATGAGAACTGTTATCAAATGGTGTATGCAGTTGTGATCTTTAGTTTTCCTTCTGAATCATTCATAAATCATACGCGAAGTATTTTTGTGTTTACATTCGTTTTTACATTGTCATTTAGGTTGCTGTTTTGAAGTTGGATTTCTTAGTCAACCATAGGTGTGTGCATGTTCTTTTCTTAGTCAACCATAAATGTTTCTCATCATTTTGCTGAAGAATTAAGCATTGTCTTTGAAGGACCTCTTGTGACAAGAGCCCTGAAACACTTCTTCAACGCCCTACAGGGGTCCTTCATTTGTGTTAGGAAGCTGTAAGCCTGGAACATATTTTTCTTACCTTCTGTCAGTGCTAAGTGAACCACACTGAGTTTAATTATTGTTTTTGCAACCTTCCCCTATGATAATTTAGTAAGTTGCTCAATTTTTCCTTAGATGTATGAGTGACTGATAGGTTCTACATTAACATGTGCCATTACTTTCTCATGACGTTCTTTTTGTGGTAAATGGTAATGTGGAACTTACTGGGAAGTGTTCAGGCAATCTGTGGTTTCTGATTATACATTACATCAGTTAGTTCATTGTTGTTTGAGTAACAAATTTCCATTAGCCTCATTTAGAAACTTGAGTTTATTCAGTTTCCAGTAGGCTGTGACGAGGATCTTGTAAAAGCAAGAGGTATTCTTAACTTGTCTTATATAATATAGTTATTTTTCCTATAACCATCTGGTTGAATGCTTTTTATTTTTCCCATAACTTAATGGGGAAAGCTAATCAGGAAGTGTAGAGGATGACACTGTTACATGGTTGGAATTTCATTTAACAATTATAATGTGTTCCATACAGAGAAGAATCTCTCCGGTGGGAAGTTTGTGGTCGAGGTTTCTTTATTTGGCCTGCACATACATTCAGAAAGTCATGATCTTTGCGAAGAGACTTCATGTCCTATTGCACCTGGAAAATTCTCTTTATCTCACTCCCAAAGCTTACCTCCATTTACGCCACCAGTAAGTCTTGTTTGGTCGATTTAATGCTTCTTTCTCTTCAGTAAAATTTCATGTTGCTTTACAACTTTCAAAAGTTTCTATGAACTGCCCCATCTTTGTTTAGATGATCCGTACATCATCCAATTTTCTTCTGTTCGTGAATGTTGACTGAATTTTGCAATTTCTATTACAGGGTTTATATGCTGTTAAAATAATATTGAGAGATAGCAAGAACGACCAGTTGACTTGCATAAACTTCAAGCTCAAAATTGTTTTTGGTGATGAGAAATCAGCAATTACTGAAGAATCCTTGGTTGCTGAGAGTTGAAAATGGGCCAATTCAAGTTAGTTTTCATGTTACTTTCTCCTCTGTTTTTCAACTGCATGGTGTGTAATATTTATGCTTCTACTACAAGGATTGTTCTCTTTCTCCCTTTGTTGGTGTTTATGAATGTATAAAAGCTTCTGAACAAATGTGAATTCCTCAATATTCAGCTGTTTTCTACATCCTCCTCGGCTTTTACTTAGCTTTTGAAAAATAGAAAATGG

mRNA sequence

TCTACATCCGGTATTACTAATTTCCCTTATGAAAAAATTGATGCTATGAACAGGTGTCATTATTTTATTGGTCCATTTCGCCGGCATAATAATGTATTTTTCAATCCCTCGTCGTTGAGACTTCTTCTGTCTTCGTCTTCACTCCTTTTGTTTTAGATCGGCCGTTCCAACTCCGATCATCGACGACATCATGGACGGAGGACGCTCGTTCAATCACATCCTCTTTCTTCTCTTCGTCGTTCTCCTGCTCTTTCCGGTCATCTTTGCTGCCAAATTTGACTATTGCGTTTCCGATTTTTGTGATTCGAGATAAGTAAGAGACACTCCGAGGAAAAGGAATTTATGACTGTTTTGCATTCTGGATTTATACTTTTTGATCAATTGATGTCTGATTGTGGATTGGAATCAGATAGGAGAGGTAATTATCCTGTGAAGGTCGATGGACTCGAAGTATCTCCTTATCCAGTAAAGAGTGGCCAGCCTGCCACGTTCACCGTTTCAGCCTCAACTGACTTTGATGAAGATCAGAATAATGGAAGTGAAACTTTAGTTTATGAGAACTGTTATCAAATGGTGTATGCAGTTTCAACCATAAATGTTTCTCATCATTTTGCTGAAGAATTAAGCATTGTCTTTGAAGGACCTCTTGTGACAAGAGCCCTGAAACACTTCTTCAACGCCCTACAGGGGTCCTTCATTTGTGTTAGGAAGCTGCAATCTGTGGTTTCTGATTATACATTACATCAGTTAAAACTTGAGTTTATTCAGTTTCCAGTAGGCTGTGACGAGGATCTTGTAAAAGCAAGAGAGAAGAATCTCTCCGGTGGGAAGTTTGTGGTCGAGGTTTCTTTATTTGGCCTGCACATACATTCAGAAAGTCATGATCTTTGCGAAGAGACTTCATGTCCTATTGCACCTGGAAAATTCTCTTTATCTCACTCCCAAAGCTTACCTCCATTTACGCCACCAGGTTTATATGCTGTTAAAATAATATTGAGAGATAGCAAGAACGACCAGTTGACTTGCATAAACTTCAAGCTCAAAATTGTTTTTGGTGATGAGAAATCAGCAATTACTGAAGAATCCTTGGTTGCTGAGAGTTGAAAATGGGCCAATTCAAGTTAGTTTTCATGTTACTTTCTCCTCTGTTTTTCAACTGCATGGTGTGTAATATTTATGCTTCTACTACAAGGATTGTTCTCTTTCTCCCTTTGTTGGTGTTTATGAATGTATAAAAGCTTCTGAACAAATGTGAATTCCTCAATATTCAGCTGTTTTCTACATCCTCCTCGGCTTTTACTTAGCTTTTGAAAAATAGAAAATGG

Coding sequence (CDS)

ATGACTGTTTTGCATTCTGGATTTATACTTTTTGATCAATTGATGTCTGATTGTGGATTGGAATCAGATAGGAGAGGTAATTATCCTGTGAAGGTCGATGGACTCGAAGTATCTCCTTATCCAGTAAAGAGTGGCCAGCCTGCCACGTTCACCGTTTCAGCCTCAACTGACTTTGATGAAGATCAGAATAATGGAAGTGAAACTTTAGTTTATGAGAACTGTTATCAAATGGTGTATGCAGTTTCAACCATAAATGTTTCTCATCATTTTGCTGAAGAATTAAGCATTGTCTTTGAAGGACCTCTTGTGACAAGAGCCCTGAAACACTTCTTCAACGCCCTACAGGGGTCCTTCATTTGTGTTAGGAAGCTGCAATCTGTGGTTTCTGATTATACATTACATCAGTTAAAACTTGAGTTTATTCAGTTTCCAGTAGGCTGTGACGAGGATCTTGTAAAAGCAAGAGAGAAGAATCTCTCCGGTGGGAAGTTTGTGGTCGAGGTTTCTTTATTTGGCCTGCACATACATTCAGAAAGTCATGATCTTTGCGAAGAGACTTCATGTCCTATTGCACCTGGAAAATTCTCTTTATCTCACTCCCAAAGCTTACCTCCATTTACGCCACCAGGTTTATATGCTGTTAAAATAATATTGAGAGATAGCAAGAACGACCAGTTGACTTGCATAAACTTCAAGCTCAAAATTGTTTTTGGTGATGAGAAATCAGCAATTACTGAAGAATCCTTGGTTGCTGAGAGTTGA

Protein sequence

MTVLHSGFILFDQLMSDCGLESDRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVSTINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQFPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES

Homology

[Close]

BLAST of Clc03G13370 vs. NCBI nr
Match: XP_008443632.1 (PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 8.1e-49
Identity = 122/231 (52.81%), Postives = 126/231 (54.55%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           DRRGNYPVKVD LEVSP PVKSGQPATFTVSAST                          
Sbjct: 33  DRRGNYPVKVDELEVSPDPVKSGQPATFTVSAST-------------------------- 92

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 93  ------------------------------------------------------------ 152

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                        EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS
Sbjct: 153 -------------EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 164

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG Y VKIILRDSKN QLTCI+FKLKIVFGD +SAI+E+SLVAES
Sbjct: 213 LPPFTPPGSYVVKIILRDSKNQQLTCISFKLKIVFGDAESAISEKSLVAES 164

[Close]

BLAST of Clc03G13370 vs. NCBI nr
Match: XP_004139084.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucumis sativus] >KGN66610.1 hypothetical protein Csa_007548 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.6e-47
Identity = 120/231 (51.95%), Postives = 124/231 (53.68%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           DRRG+YPVKV  LEVSP PVKSGQPATFTVSAST                          
Sbjct: 33  DRRGDYPVKVGELEVSPDPVKSGQPATFTVSAST-------------------------- 92

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 93  ------------------------------------------------------------ 152

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                        EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS
Sbjct: 153 -------------EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 164

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG Y VKIILRDSKN QLTCINFKLKIVFGD +SAI+E+ LVAES
Sbjct: 213 LPPFTPPGSYTVKIILRDSKNQQLTCINFKLKIVFGDAESAISEKYLVAES 164

[Close]

BLAST of Clc03G13370 vs. NCBI nr
Match: XP_023520653.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-47
Identity = 115/231 (49.78%), Postives = 125/231 (54.11%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           D+RGNYPVKVDGL+VSPYPVK G+PATF VSAST                          
Sbjct: 32  DKRGNYPVKVDGLKVSPYPVKGGKPATFAVSAST-------------------------- 91

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 92  ------------------------------------------------------------ 151

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                        EKNLSGGKF VEVSLFG+HIHSESHDLCEETSCPI PGKFSLSHSQS
Sbjct: 152 -------------EKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQS 163

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG+Y+VKIIL+D+  +QLTCI+FKLKIVFGDEKSAI EESLVAES
Sbjct: 212 LPPFTPPGMYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 163

[Close]

BLAST of Clc03G13370 vs. NCBI nr
Match: KAG7022171.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.6 bits (501), Expect = 1.3e-46
Identity = 114/231 (49.35%), Postives = 125/231 (54.11%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           D+RGNYPVKVDGL+VSPYPVK G+PATF VSAS+                          
Sbjct: 32  DKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASS-------------------------- 91

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 92  ------------------------------------------------------------ 151

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                        EKNLSGGKF VEVSLFG+HIHSESHDLCEETSCPI PGKFSLSHSQS
Sbjct: 152 -------------EKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQS 163

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG+Y+VKIIL+D+  +QLTCI+FKLKIVFGDEKSAI EESLVAES
Sbjct: 212 LPPFTPPGMYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 163

[Close]

BLAST of Clc03G13370 vs. NCBI nr
Match: XP_023001324.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucurbita maxima])

HSP 1 Score: 197.6 bits (501), Expect = 1.3e-46
Identity = 114/231 (49.35%), Postives = 125/231 (54.11%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           D+RGNYPVKVDGL+VSPYPVK G+PATF VSAST                          
Sbjct: 32  DKRGNYPVKVDGLKVSPYPVKGGKPATFAVSAST-------------------------- 91

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 92  ------------------------------------------------------------ 151

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                        EKNLSGGKF VEVSLFG+HIHSESHDLCEETSCPI PGKFSLSHSQS
Sbjct: 152 -------------EKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQS 163

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG+Y+VKIIL+D + +QLTCI+FKLKIVFGDEKSAI +ESLVAES
Sbjct: 212 LPPFTPPGMYSVKIILKDMEKEQLTCISFKLKIVFGDEKSAIPKESLVAES 163

[Close]

BLAST of Clc03G13370 vs. ExPASy TrEMBL
Match: A0A1S3B808 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Cucumis melo OX=3656 GN=LOC103487184 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 3.9e-49
Identity = 122/231 (52.81%), Postives = 126/231 (54.55%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           DRRGNYPVKVD LEVSP PVKSGQPATFTVSAST                          
Sbjct: 33  DRRGNYPVKVDELEVSPDPVKSGQPATFTVSAST-------------------------- 92

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 93  ------------------------------------------------------------ 152

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                        EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS
Sbjct: 153 -------------EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 164

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG Y VKIILRDSKN QLTCI+FKLKIVFGD +SAI+E+SLVAES
Sbjct: 213 LPPFTPPGSYVVKIILRDSKNQQLTCISFKLKIVFGDAESAISEKSLVAES 164

[Close]

BLAST of Clc03G13370 vs. ExPASy TrEMBL
Match: A0A0A0LXM9 (ML domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G641040 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 120/231 (51.95%), Postives = 124/231 (53.68%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           DRRG+YPVKV  LEVSP PVKSGQPATFTVSAST                          
Sbjct: 33  DRRGDYPVKVGELEVSPDPVKSGQPATFTVSAST-------------------------- 92

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 93  ------------------------------------------------------------ 152

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                        EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS
Sbjct: 153 -------------EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 164

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG Y VKIILRDSKN QLTCINFKLKIVFGD +SAI+E+ LVAES
Sbjct: 213 LPPFTPPGSYTVKIILRDSKNQQLTCINFKLKIVFGDAESAISEKYLVAES 164

[Close]

BLAST of Clc03G13370 vs. ExPASy TrEMBL
Match: A0A6J1KME8 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Cucurbita maxima OX=3661 GN=LOC111495487 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 6.3e-47
Identity = 114/231 (49.35%), Postives = 125/231 (54.11%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           D+RGNYPVKVDGL+VSPYPVK G+PATF VSAST                          
Sbjct: 32  DKRGNYPVKVDGLKVSPYPVKGGKPATFAVSAST-------------------------- 91

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 92  ------------------------------------------------------------ 151

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                        EKNLSGGKF VEVSLFG+HIHSESHDLCEETSCPI PGKFSLSHSQS
Sbjct: 152 -------------EKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQS 163

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG+Y+VKIIL+D + +QLTCI+FKLKIVFGDEKSAI +ESLVAES
Sbjct: 212 LPPFTPPGMYSVKIILKDMEKEQLTCISFKLKIVFGDEKSAIPKESLVAES 163

[Close]

BLAST of Clc03G13370 vs. ExPASy TrEMBL
Match: A0A6J1F0H6 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Cucurbita moschata OX=3662 GN=LOC111441041 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 112/231 (48.48%), Postives = 123/231 (53.25%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           D+RGNYPVKVDGL+VSPYPVK G+PATF VSAST                          
Sbjct: 32  DKRGNYPVKVDGLKVSPYPVKGGKPATFAVSAST-------------------------- 91

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 92  ------------------------------------------------------------ 151

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                        EKNLSGGKF VEVSLFG+ IHSESHDLCE TSCP+ PGKFSLSHSQS
Sbjct: 152 -------------EKNLSGGKFEVEVSLFGVRIHSESHDLCEATSCPVKPGKFSLSHSQS 163

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG+Y+VKIIL+D+  +QLTCI+FKLKIVFGDEKSAI EESLVAES
Sbjct: 212 LPPFTPPGMYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 163

[Close]

BLAST of Clc03G13370 vs. ExPASy TrEMBL
Match: A0A6J1CKB6 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Momordica charantia OX=3673 GN=LOC111012235 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-42
Identity = 109/231 (47.19%), Postives = 121/231 (52.38%), Query Frame = 0


Query: 23  DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTDFDEDQNNGSETLVYENCYQMVYAVS 82
           D+RGNY VKV  LEVSP PVKSG+PATFTVSASTD                         
Sbjct: 33  DKRGNYAVKVAALEVSPDPVKSGKPATFTVSASTD------------------------- 92

Query: 83  TINVSHHFAEELSIVFEGPLVTRALKHFFNALQGSFICVRKLQSVVSDYTLHQLKLEFIQ 142
                                                                       
Sbjct: 93  ------------------------------------------------------------ 152

Query: 143 FPVGCDEDLVKAREKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQS 202
                         K LSGGKF VEVSLFG+HIHSE+HDLCE TSCP+ PGKFSL+HSQS
Sbjct: 153 --------------KVLSGGKFGVEVSLFGMHIHSEAHDLCEVTSCPVVPGKFSLAHSQS 164

Query: 203 LPPFTPPGLYAVKIILRDSKNDQLTCINFKLKIVFGDEKSAITEESLVAES 254
           LPPFTPPG Y+VKI+L+D+KN QLTCINFKLKIVFGD +SAI+EESLVAES
Sbjct: 213 LPPFTPPGSYSVKILLKDNKNRQLTCINFKLKIVFGDGESAISEESLVAES 164

[Close]

BLAST of Clc03G13370 vs. TAIR 10
Match: AT3G44100.1 (MD-2-related lipid recognition domain-containing protein )

HSP 1 Score: 108.2 bits (269), Expect = 9.6e-24
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 157 KNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGLYAVKI 216
           +++SGGK V+ V   G+ +H+E+HDLC+ET+CP+APG F LSHSQ+LP  TPPG Y +K+
Sbjct: 65  EDISGGKVVIRVLYVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKM 124

Query: 217 ILRDSKNDQLTCINFKLKIVFG 239
            + D    +LTCI+FK KI  G
Sbjct: 125 TINDKNGGRLTCISFKFKITVG 146

[Close]

BLAST of Clc03G13370 vs. TAIR 10
Match: AT3G11780.1 (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-23
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 156 EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGLYAVK 215
           +  +S GK V+EVS FG HIHSE+HDLC+ETSCP+A G F ++HSQ LP +TPPG Y++K
Sbjct: 65  DTEISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGSYSLK 124

Query: 216 IILRDSKNDQLTCINFKLKIVFG 239
           + + D +  +LTCI F   I FG
Sbjct: 125 MKMLDGRKKELTCIKFSFDIGFG 147

HSP 2 Score: 47.0 bits (110), Expect = 2.6e-05
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 23 DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTD 58
          D    Y VKV G++++PYP+  G+PATF +SA+TD
Sbjct: 31 DNNEEYEVKVQGVDITPYPIARGEPATFRISANTD 65

[Close]

BLAST of Clc03G13370 vs. TAIR 10
Match: AT5G06480.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-21
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 157 KNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGLYAVKI 216
           + +S GK V+EVS FG H+HSE+HDLC ETSCPI  G F ++HSQ LP +TPPG Y +K+
Sbjct: 66  REISFGKLVIEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKM 125

Query: 217 ILRDSKNDQLTCINFKLKI 236
            + D+K  +LTCI F   I
Sbjct: 126 KMLDAKKKELTCIKFSFDI 144

HSP 2 Score: 40.4 bits (93), Expect = 2.5e-03
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 23 DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSAST 57
          +    Y VKV  +++SP P+  G+PATFT+SA+T
Sbjct: 31 EENAEYEVKVKEVDISPNPIAPGEPATFTISANT 64

[Close]

BLAST of Clc03G13370 vs. TAIR 10
Match: AT3G11780.2 (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein )

HSP 1 Score: 96.3 bits (238), Expect = 3.8e-20
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 156 EKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPP------ 215
           +  +S GK V+EVS FG HIHSE+HDLC+ETSCP+A G F ++HSQ LP +TPP      
Sbjct: 65  DTEISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPTEKRFN 124

Query: 216 ------------GLYAVKIILRDSKNDQLTCINFKLKIVFG 239
                       G Y++K+ + D +  +LTCI F   I FG
Sbjct: 125 LVSIAYYEFHVEGSYSLKMKMLDGRKKELTCIKFSFDIGFG 165

HSP 2 Score: 47.0 bits (110), Expect = 2.6e-05
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 23 DRRGNYPVKVDGLEVSPYPVKSGQPATFTVSASTD 58
          D    Y VKV G++++PYP+  G+PATF +SA+TD
Sbjct: 31 DNNEEYEVKVQGVDITPYPIARGEPATFRISANTD 65

The following BLAST results are available for this feature:

BLAST of Clc03G13370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443632.1	8.1e-49	52.81	PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein D...	[more]
XP_004139084.1	2.6e-47	51.95	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
XP_023520653.1	4.5e-47	49.78	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
KAG7022171.1	1.3e-46	49.35	putative phosphatidylglycerol/phosphatidylinositol transfer protein [Cucurbita a...	[more]
XP_023001324.1	1.3e-46	49.35	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]

BLAST of Clc03G13370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G13370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B808	3.9e-49	52.81	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
A0A0A0LXM9	1.3e-47	51.95	ML domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G641040 PE=4 SV=...	[more]
A0A6J1KME8	6.3e-47	49.35	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
A0A6J1F0H6	1.2e-45	48.48	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
A0A6J1CKB6	1.6e-42	47.19	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]

BLAST of Clc03G13370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44100.1	9.6e-24	53.66	MD-2-related lipid recognition domain-containing protein	[more]
AT3G11780.1	1.6e-23	55.42	MD-2-related lipid recognition domain-containing protein / ML domain-containing ...	[more]
AT5G06480.1	1.2e-21	55.70	Immunoglobulin E-set superfamily protein	[more]
AT3G11780.2	3.8e-20	45.54	MD-2-related lipid recognition domain-containing protein / ML domain-containing ...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003172	MD-2-related lipid-recognition domain	SMART	SM00737	pgtp_13	coord: 128..233 e-value: 7.7E-8 score: 42.0
IPR003172	MD-2-related lipid-recognition domain	PFAM	PF02221	E1_DerP2_DerF2	coord: 156..235 e-value: 1.4E-12 score: 48.1
None	No IPR available	GENE3D	2.60.40.770		coord: 15..237 e-value: 4.2E-11 score: 45.3
None	No IPR available	PANTHER	PTHR11306:SF34	PHOSPHATIDYLGLYCEROL/PHOSPHATIDYLINOSITOL TRANSFER PROTEIN DDB_G0282179 ISOFORM X1-RELATED	coord: 155..244 coord: 22..57
IPR039670	Sterol transport protein NPC2-like	PANTHER	PTHR11306	NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED	coord: 155..244 coord: 22..57
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 157..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G13370.2	Clc03G13370.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015918	sterol transport