Clc03G13280 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G13280
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Secretion protein HlyD family protein
Location	ClcChr03: 22677364 .. 22677714 (-)
RNA-Seq Expression	Clc03G13280
Synteny	Clc03G13280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

mRNA sequence

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

Coding sequence (CDS)

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

Protein sequence

MVTRVPLEDLTRAQTPISRANRLLTETMVELESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQDSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFKKLHQDRSLYLCF

Homology

[Close]

BLAST of Clc03G13280 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-07
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 6    PLEDLTRAQTPISRANRLLTETMVELE----SSNANNARIQAKLDKIEAPLCDAAYLEEK 65
            P E L +A + +++AN LL  T  +LE     S    A +Q +LD++ A L ++ +L  +
Sbjct: 1139 PREKLEQAISSLNQANSLLEGTQRKLEMEKRKSRDELANLQRRLDEVNARLFNSEFLARE 1198

Query: 66   FKETKSFTRLQDSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
            FK+T+ +  LQ+S ME GV W +++ S Q P +D+ FL   F+
Sbjct: 1199 FKKTQEYVDLQNSAMECGVFWFLRQVSTQHPDIDISFLPERFR 1241

[Close]

BLAST of Clc03G13280 vs. NCBI nr
Match: XP_031737089.1 (uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 225 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 284

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 285 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 316

[Close]

BLAST of Clc03G13280 vs. NCBI nr
Match: XP_031737075.1 (uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 256 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 315

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 316 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 347

[Close]

BLAST of Clc03G13280 vs. NCBI nr
Match: XP_031737083.1 (uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 242 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 301

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 302 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 333

[Close]

BLAST of Clc03G13280 vs. NCBI nr
Match: KGN66039.2 (hypothetical protein Csa_020117 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 241 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 300

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 301 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 332

[Close]

BLAST of Clc03G13280 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 6    PLEDLTRAQTPISRANRLLTETMVELE----SSNANNARIQAKLDKIEAPLCDAAYLEEK 65
            P E L +A + +++AN LL  T  +LE     S    A +Q +LD++ A L ++ +L  +
Sbjct: 1139 PREKLEQAISSLNQANSLLEGTQRKLEMEKRKSRDELANLQRRLDEVNARLFNSEFLARE 1198

Query: 66   FKETKSFTRLQDSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
            FK+T+ +  LQ+S ME GV W +++ S Q P +D+ FL   F+
Sbjct: 1199 FKKTQEYVDLQNSAMECGVFWFLRQVSTQHPDIDISFLPERFR 1241

[Close]

BLAST of Clc03G13280 vs. ExPASy TrEMBL
Match: A0A0A0LXX2 (Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 18  LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 77

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 78  NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 109

[Close]

BLAST of Clc03G13280 vs. ExPASy TrEMBL
Match: A0A5A7SSF9 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00750 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 237 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 296

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 297 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 328

[Close]

BLAST of Clc03G13280 vs. ExPASy TrEMBL
Match: A0A5D3BQ22 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00610 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 186 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 245

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 246 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 277

[Close]

BLAST of Clc03G13280 vs. ExPASy TrEMBL
Match: A0A1S3C5B2 (uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 247 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 306

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 307 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 338

The following BLAST results are available for this feature:

BLAST of Clc03G13280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156747.1	3.5e-07	35.92	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
XP_031737089.1	7.9e-07	39.13	uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus]	[more]
XP_031737075.1	7.9e-07	39.13	uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus]	[more]
XP_031737083.1	7.9e-07	39.13	uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus]	[more]
KGN66039.2	7.9e-07	39.13	hypothetical protein Csa_020117 [Cucumis sativus]	[more]

BLAST of Clc03G13280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G13280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSS1	1.7e-07	35.92	uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0LXX2	3.8e-07	39.13	Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250...	[more]
A0A5A7SSF9	5.0e-07	39.13	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BQ22	5.0e-07	39.13	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C5B2	5.0e-07	39.13	uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Clc03G13280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G13280.1	Clc03G13280.1	mRNA