Clc03G12970 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G12970
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibonuclease H
LocationClcChr03: 21244282 .. 21244647 (-)
RNA-Seq ExpressionClc03G12970
SyntenyClc03G12970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGAAAAGAAGGGGTCGACGTTGAGGCTAAGGTCGAGGCTGAAGTTGGGGCCTGGGTCAAGGCCGGCCCATGGGTCTTTAAGAAAAGGAAACCTAAATCAAAAGGAATTTACAATTTTTCAGGTGATGAGTGGAACGATCAGTCTCCCAGCAACATGAGGGAGGTCGAGGTCGGGGCCATTCAAGGAAGTCAATTGGCAAAGGAATTGGAATTGGTCCCAATCACCTCAGAAGATAGGAGGATAAACATTGGAACCAAGATGGGAACAGAGCAAAAAGAGAGTCTAATCAAATTTCTCAGGCAGAATGCTGACATATTCGCTTGGTCACATAAGGATATGCCTAGGTTGATCCTAATGTAA

mRNA sequence

ATGAACAGAAAAGAAGGGGTCGACGTTGAGGCTAAGGTCGAGGCTGAAGTTGGGGCCTGGGTCAAGGCCGGCCCATGGGTCTTTAAGAAAAGGAAACCTAAATCAAAAGGAATTTACAATTTTTCAGGTGATGAGTGGAACGATCAGTCTCCCAGCAACATGAGGGAGGTCGAGGTCGGGGCCATTCAAGGAAGTCAATTGGCAAAGGAATTGGAATTGGTCCCAATCACCTCAGAAGATAGGAGGATAAACATTGGAACCAAGATGGGAACAGAGCAAAAAGAGAGTCTAATCAAATTTCTCAGGCAGAATGCTGACATATTCGCTTGGTCACATAAGGATATGCCTAGGTTGATCCTAATGTAA

Coding sequence (CDS)

ATGAACAGAAAAGAAGGGGTCGACGTTGAGGCTAAGGTCGAGGCTGAAGTTGGGGCCTGGGTCAAGGCCGGCCCATGGGTCTTTAAGAAAAGGAAACCTAAATCAAAAGGAATTTACAATTTTTCAGGTGATGAGTGGAACGATCAGTCTCCCAGCAACATGAGGGAGGTCGAGGTCGGGGCCATTCAAGGAAGTCAATTGGCAAAGGAATTGGAATTGGTCCCAATCACCTCAGAAGATAGGAGGATAAACATTGGAACCAAGATGGGAACAGAGCAAAAAGAGAGTCTAATCAAATTTCTCAGGCAGAATGCTGACATATTCGCTTGGTCACATAAGGATATGCCTAGGTTGATCCTAATGTAA

Protein sequence

MNRKEGVDVEAKVEAEVGAWVKAGPWVFKKRKPKSKGIYNFSGDEWNDQSPSNMREVEVGAIQGSQLAKELELVPITSEDRRINIGTKMGTEQKESLIKFLRQNADIFAWSHKDMPRLILM
Homology
[Close]
BLAST of Clc03G12970 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 8.5e-12
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 48  DQSPSNMREVEVGAIQGSQLAKELELVPITSEDRRINIGTKMGTEQKESLIKFLRQNADI 107
           D  PS    +    +   + A+E+E VP+T+EDRR+NIGTK+G+E++ESLI FLR NAD+
Sbjct: 88  DARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLGSEERESLINFLRSNADV 147

Query: 108 FAWSHKDMP 117
           F WS +DMP
Sbjct: 148 FTWSPEDMP 156

[Close]
BLAST of Clc03G12970 vs. NCBI nr
Match: XP_022156048.1 (uncharacterized protein LOC111023016 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 40  NFSGDEWNDQSPSNMREVEVGAIQGSQLAKELELVPITSEDRRINIGTKMGTEQKESLIK 99
           N + D   +  PS    +    +     A+E+E VP+T E++R+NIGTK+G E++ESLI 
Sbjct: 40  NKATDLSGEARPSPGHRLNSTTLDRGGSAEEVESVPLTVEEQRVNIGTKLGNEERESLIN 99

Query: 100 FLRQNADIFAWSHKDMPRL 119
           FLR NAD+FAWS +DMPR+
Sbjct: 100 FLRSNADVFAWSPEDMPRI 118

[Close]
BLAST of Clc03G12970 vs. NCBI nr
Match: XP_022158042.1 (uncharacterized protein LOC111024621 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 30/48 (62.50%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 69  KELELVPITSEDRRINIGTKMGTEQKESLIKFLRQNADIFAWSHKDMP 117
           KE+E +P+TS+DRR+NIGT++G +++ SLI FLR N D+FAWSH+DMP
Sbjct: 89  KEVESIPLTSDDRRVNIGTRLGNKKRASLISFLRSNTDVFAWSHEDMP 136

[Close]
BLAST of Clc03G12970 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-09
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 56  EVEVGAIQGSQLAKELELVPITSEDRRINIGTKMGTEQKESLIKFLRQNADIFAWSHKDM 115
           E ++   + +   +ELELVP+ S +++++IGTK+G   +E LI FLR N+D+FAWSH+DM
Sbjct: 12  EADLPRRESAAPTEELELVPLLSPEKQVSIGTKLGATDREELIHFLRSNSDVFAWSHEDM 71

Query: 116 PRL 119
           P +
Sbjct: 72  PSI 74

[Close]
BLAST of Clc03G12970 vs. NCBI nr
Match: XP_022149378.1 (uncharacterized protein LOC111017809 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 46  WNDQSPSNMREVEVGAIQGSQLAKELELVPITSEDRRINIGTKMGTEQKESLIKFLRQNA 105
           W+    S     +VG  +     +ELELVP+ S +R+++IGTK+G   +E  I FLR N+
Sbjct: 76  WDKSLESKADLPQVGKREFFATTEELELVPLLSPERQVSIGTKLGATDREEFINFLRTNS 135

Query: 106 DIFAWSHKDMP 117
           ++FAWSH++MP
Sbjct: 136 NVFAWSHENMP 146

[Close]
BLAST of Clc03G12970 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.1e-12
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 48  DQSPSNMREVEVGAIQGSQLAKELELVPITSEDRRINIGTKMGTEQKESLIKFLRQNADI 107
           D  PS    +    +   + A+E+E VP+T+EDRR+NIGTK+G+E++ESLI FLR NAD+
Sbjct: 88  DARPSPGHRLNSTTLDRGEPAEEVESVPLTAEDRRVNIGTKLGSEERESLINFLRSNADV 147

Query: 108 FAWSHKDMP 117
           F WS +DMP
Sbjct: 148 FTWSPEDMP 156

[Close]
BLAST of Clc03G12970 vs. ExPASy TrEMBL
Match: A0A6J1DPJ5 (uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023016 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 40  NFSGDEWNDQSPSNMREVEVGAIQGSQLAKELELVPITSEDRRINIGTKMGTEQKESLIK 99
           N + D   +  PS    +    +     A+E+E VP+T E++R+NIGTK+G E++ESLI 
Sbjct: 40  NKATDLSGEARPSPGHRLNSTTLDRGGSAEEVESVPLTVEEQRVNIGTKLGNEERESLIN 99

Query: 100 FLRQNADIFAWSHKDMPRL 119
           FLR NAD+FAWS +DMPR+
Sbjct: 100 FLRSNADVFAWSPEDMPRI 118

[Close]
BLAST of Clc03G12970 vs. ExPASy TrEMBL
Match: A0A6J1DW49 (uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024621 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 30/48 (62.50%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 69  KELELVPITSEDRRINIGTKMGTEQKESLIKFLRQNADIFAWSHKDMP 117
           KE+E +P+TS+DRR+NIGT++G +++ SLI FLR N D+FAWSH+DMP
Sbjct: 89  KEVESIPLTSDDRRVNIGTRLGNKKRASLISFLRSNTDVFAWSHEDMP 136

[Close]
BLAST of Clc03G12970 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.2e-09
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 56  EVEVGAIQGSQLAKELELVPITSEDRRINIGTKMGTEQKESLIKFLRQNADIFAWSHKDM 115
           E ++   + +   +ELELVP+ S +++++IGTK+G   +E LI FLR N+D+FAWSH+DM
Sbjct: 12  EADLPRRESAAPTEELELVPLLSPEKQVSIGTKLGATDREELIHFLRSNSDVFAWSHEDM 71

Query: 116 PRL 119
           P +
Sbjct: 72  PSI 74

[Close]
BLAST of Clc03G12970 vs. ExPASy TrEMBL
Match: A0A6J1D6M1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 46  WNDQSPSNMREVEVGAIQGSQLAKELELVPITSEDRRINIGTKMGTEQKESLIKFLRQNA 105
           W+    S     +VG  +     +ELELVP+ S +R+++IGTK+G   +E  I FLR N+
Sbjct: 76  WDKSLESKADLPQVGKREFFATTEELELVPLLSPERQVSIGTKLGATDREEFINFLRTNS 135

Query: 106 DIFAWSHKDMP 117
           ++FAWSH++MP
Sbjct: 136 NVFAWSHENMP 146

The following BLAST results are available for this feature:
BLAST of Clc03G12970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156571.18.5e-1252.17uncharacterized protein LOC111023448 [Momordica charantia][more]
XP_022156048.15.5e-1146.84uncharacterized protein LOC111023016 [Momordica charantia][more]
XP_022158042.12.1e-1062.50uncharacterized protein LOC111024621 [Momordica charantia][more]
XP_022136647.18.8e-0946.03uncharacterized protein LOC111008302 [Momordica charantia][more]
XP_022149378.15.7e-0842.25uncharacterized protein LOC111017809 [Momordica charantia][more]
BLAST of Clc03G12970 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc03G12970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DVC64.1e-1252.17Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1[more]
A0A6J1DPJ52.7e-1146.84uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DW491.0e-1062.50uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1C6174.2e-0946.03Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1[more]
A0A6J1D6M12.8e-0842.25Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1[more]
BLAST of Clc03G12970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G12970.1Clc03G12970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0003676 nucleic acid binding