Clc03G12460 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G12460
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Defensin-like protein
Location	ClcChr03: 19377358 .. 19377839 (+)
RNA-Seq Expression	Clc03G12460
Synteny	Clc03G12460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCCATCTCCTTCTCCGCCATTGTTCTTGTGGTTTTACTCATCTTCAATGGTACCCTTATTTAATTTTATTATTTCTTAGAATTTCCTCATCCCATTAATAATTTGATTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTGTCTTTTTAATTGATTTTATGGTAAAAATATACCCGATTTATTTAATTGTTGACCTAAAAAAAAAAAAACAATAAGTTTCAATGCTTAAAAAACTTTATGATTTATTTACTTACATATTAGATATTGAGCTTGGTGTATGGATTTTGTGAAAGCAGGAGAAACAATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCACGGTGGAGGGTGCAAAGATGCTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

mRNA sequence

ATGAAGTCCATCTCCTTCTCCGCCATTGTTCTTGTGGTTTTACTCATCTTCAATGGAGAAACAATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCACGGTGGAGGGTGCAAAGATGCTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

Coding sequence (CDS)

ATGAAGTCCATCTCCTTCTCCGCCATTGTTCTTGTGGTTTTACTCATCTTCAATGGAGAAACAATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCACGGTGGAGGGTGCAAAGATGCTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

Protein sequence

MKSISFSAIVLVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDAECMSGCKAQFGATAIGLCFFFRTPSDTCLCRYPC

Homology

[Close]

BLAST of Clc03G12460 vs. NCBI nr
Match: KGN61300.1 (hypothetical protein Csa_006301 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGET-MMRSVEGEGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GET MMRSVEGEGLCEKALHGGGCKDAEC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Clc03G12460 vs. NCBI nr
Match: KAA0040274.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIFNGETMM+SVEG  GLC+KALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFNGETMMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Clc03G12460 vs. NCBI nr
Match: KAA0061621.1 (Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIF+GETMM+SVEG  GLCEKALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Clc03G12460 vs. NCBI nr
Match: KAA0062516.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 5.8e-30
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MK +SFSAI+L +LLIFNGETMM+SVEG  GLCEKALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKFVSFSAILLALLLIFNGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Clc03G12460 vs. NCBI nr
Match: KAA0062251.1 (Defensin-like protein [Cucumis melo var. makuwa] >TYK27293.1 Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 9.9e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKSISFSAI+L +LLIF+GETMM+SVEG  GLCEKALHGGGCKDAEC+SGCKA FG  A+
Sbjct: 1  MKSISFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Clc03G12460 vs. ExPASy TrEMBL
Match: A0A5A7T9W7 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00030 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIFNGETMM+SVEG  GLC+KALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFNGETMMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Clc03G12460 vs. ExPASy TrEMBL
Match: A0A0A0LH75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGET-MMRSVEGEGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GET MMRSVEGEGLCEKALHGGGCKDAEC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Clc03G12460 vs. ExPASy TrEMBL
Match: A0A5A7V7B1 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3861G00090 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIF+GETMM+SVEG  GLCEKALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Clc03G12460 vs. ExPASy TrEMBL
Match: A0A5A7V7X3 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7126G00070 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-30
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MK +SFSAI+L +LLIFNGETMM+SVEG  GLCEKALHGGGCKDAECMSGCKA FG  A+
Sbjct: 1  MKFVSFSAILLALLLIFNGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Clc03G12460 vs. ExPASy TrEMBL
Match: A0A5A7V978 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00660 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.8e-30
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGETMMRSVEG-EGLCEKALHGGGCKDAECMSGCKAQFGATAI 60
          MKSISFSAI+L +LLIF+GETMM+SVEG  GLCEKALHGGGCKDAEC+SGCKA FG  A+
Sbjct: 1  MKSISFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

The following BLAST results are available for this feature:

BLAST of Clc03G12460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61300.1	2.6e-30	84.81	hypothetical protein Csa_006301 [Cucumis sativus]	[more]
KAA0040274.1	2.6e-30	84.81	Defensin-like protein [Cucumis melo var. makuwa]	[more]
KAA0061621.1	4.4e-30	84.81	Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like prote...	[more]
KAA0062516.1	5.8e-30	84.81	Defensin-like protein [Cucumis melo var. makuwa]	[more]
KAA0062251.1	9.9e-30	84.81	Defensin-like protein [Cucumis melo var. makuwa] >TYK27293.1 Defensin-like prote...	[more]

BLAST of Clc03G12460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G12460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9W7	1.3e-30	84.81	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23...	[more]
A0A0A0LH75	1.3e-30	84.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1	[more]
A0A5A7V7B1	2.2e-30	84.81	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7V7X3	2.8e-30	84.81	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold71...	[more]
A0A5A7V978	4.8e-30	84.81	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]

BLAST of Clc03G12460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 30..78 e-value: 8.7E-8 score: 32.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G12460.1	Clc03G12460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism