Clc03G12360 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G12360
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like
Location	ClcChr03: 19209339 .. 19211496 (-)
RNA-Seq Expression	Clc03G12360
Synteny	Clc03G12360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAGCTTGTTGTTAGTGGAGAAGTATGTAAGCATATATCACATATTCTCTCTTTTATCTGAATTCGCTTCCAAAGACAAGTGGCACTGAGAAAGAAGGAAGTTTTGGGTTTTATCAATGGTTATTTCCAGGGTTGTCACCTTTCGGTCTAGATTATTAATTCCATCTCATATAATGGTATAGTGTTCTACTGTTACCTGGCTATTCTTCAGCTTCATTTGCCTCACTACGGAAAGGGACACTAGTCACCCTACATCAAGATTCTCACAGTTCTTCTATTAGCCTTATCTCTGTTTTTATATTTAGTAATTTTTATTATCTTTAAAAATATTTTACTTCCTCTCGTTTTTATCTGTATAGATTAGGCATGGAGAAGCTGTCGGAGTAATTGGGCCTTCTGGTACCGGGAAGTCTACAATACTGAAGATCATTGCAGGTCTTCTTTCTCCAGACAAGGTAAATAATTGTCTTTGATTTCACATTGCATTTTGCTGATGTTAGTTAGACTATACATATTCCAGATTTCCATATATATGTATATATATATGGTTCTCCTAATTGGATTTCTGGTATTGTGAACAGGGAGAGGTATATATTCGAGGCAGAAAGCGAGTTGGGTTGATCGATGATGAGGAGCTATCTGGTCTTCGAATTGGATTGGTTAGAATTGCCTTTAAGTTATTTTTTTAAAAGAAGTATGTGATATATTGAAAACAGAGATTGTACCTGACTTAATCTAAAAATTGTGAAAAGGTTATTAGGTTCAATTTTACAAATTAAAAAAAAGGTAAAATGCTTTTAAGGGAGTGTTTGGACCTAGGGAGTTGGAAAGGGTGGAGTTGTGAACTCCACTCCTTGTTTGACCTAAGGAGTTTATGGGTTTCACTACTAAAAATCATCAATTTTATACCTTATTAACTCCTTGCATTGAGAGCCTTAGGAGTTCACAACTCGCTAGACTTCATAACTCCATGGAGTTCATAACTTCACCCCTTGTCCCAAACGCCCTTTCTAGGTTTCCTTTTTAGTGTTTTCAAATTCCATTTTCTTTCTACTAATTACTTTTCTGAATTTCATTATTAAGCAGTAAATTCGAACAATCCTCCCCAAGACCAACAACAGAGCATTGGCCCTCCTTGACAGCTTTGTGATGACCCAATTCCTCACACCGATTGGTTGGCTATGGTGATTGTTCAACGATACACGCTAAAAGACTCTTGGCCAGAGATACGTGCAACTTTACAAGCAATAATCTCACCTAGATGCTCCATCAACCCTATATCGGATGATAAAGCTCTTCTTCATGTTTACAATTATGATGTGGCGAAGCATCTTTACTCAACATCTGATTGGACTACTATTGATCAAAGAAAGCTCAAATTTCTATCTACATCTCATCCATCTTCATTCCAAAGTCAGATGATTACTTCTTATGGGGGCTGGATTGATCTTCATCATCTGTCGGTCACCCTTTGGCAGAAGATATAATTCAAGTTTATTGGAGATTTTTTGTGGAGGCTACCTTCATCCATCTAATCAGACTGAAAGAGGATTAATCCTCTGCTTTGCTCGCATTAAAATCAAAGAAAACCAGCGTCGCTTCATTCCTTGCAAAGTATACCTTCCTAATAAAATCGTCGGAGCCAACATCACTGTCTCCATCACTGCCTCTACTTTAGTAGCTCAGGGCCGGCGTGTTGATCTGAAACTGATGCAAGGAGCTAGCACTAATGAATCGACTGAATTTGTGGATCACAATCAATTCCCGTTTAATGATAAAGGAAAGTCTATTACCAAAATTCCAAATCAACCGAAATCACCCTCTCTCTCCCCATATTTGGAGCAGCCTATTAATTCAGCATCCCTCTCTCCTAATTATCAAATCAAGTCATTGACCGAATCTCCACAATTTATGGAGAATAATATCCTTCCTTCCCCCCAAATAAATGAATCATCAATTCCCCTCTCTCCTCCAATTAAGGAGAATATCATCATCTCTCCTCAACCAAATATTTCGGTGTACACCCTTCCTAAAATAGCAACTTCACCTACACTATCTGTCAACCCTAGCCGAAATCAATTCGACTCAACCCCTTCCTTTAATTTCCATAAACGGAATCTCAGCTCTGCTAATTTGGCACCTCCATCATTTTAG

mRNA sequence

ATGGTCAGCTTGTTGTTAGTGGAGAAGTATATTAGGCATGGAGAAGCTGTCGGAGTAATTGGGCCTTCTGGTACCGGGAAGTCTACAATACTGAAGATCATTGCAGGTCTTCTTTCTCCAGACAAGGGAGAGGTATATATTCGAGGCAGAAAGCGAGTTGGGTTGATCGATGATGAGGAGCTATCTGGTCTTCGAATTGGATTGCTTTGTGATGACCCAATTCCTCACACCGATTGGTTGGCTATGGTGATTGTTCAACGATACACGCTAAAAGACTCTTGGCCAGAGATACGTGCAACTTTACAAGCAATAATCTCACCTAGATGCTCCATCAACCCTATATCGGATGATAAAGCTCTTCTTCATGTTTACAATTATGATGTGGCGAAGCATCTTTACTCAACATCTGATTGGACTACTATTGATCAAAGAAAGCTCAAATTTCTATCTACATCTCATCCATCTTCATTCCAAAGTCAGATGATTACTTCTTATGGGGGCTGGATTGATCTTCATCATCTGTCGACTGAAAGAGGATTAATCCTCTGCTTTGCTCGCATTAAAATCAAAGAAAACCAGCGTCGCTTCATTCCTTGCAAAGTATACCTTCCTAATAAAATCGTCGGAGCCAACATCACTGTCTCCATCACTGCCTCTACTTTAGTAGCTCAGGGCCGGCGTGTTGATCTGAAACTGATGCAAGGAGCTAGCACTAATGAATCGACTGAATTTGTGGATCACAATCAATTCCCGTTTAATGATAAAGGAAAGTCTATTACCAAAATTCCAAATCAACCGAAATCACCCTCTCTCTCCCCATATTTGGAGCAGCCTATTAATTCAGCATCCCTCTCTCCTAATTATCAAATCAAGTCATTGACCGAATCTCCACAATTTATGGAGAATAATATCCTTCCTTCCCCCCAAATAAATGAATCATCAATTCCCCTCTCTCCTCCAATTAAGGAGAATATCATCATCTCTCCTCAACCAAATATTTCGGTGTACACCCTTCCTAAAATAGCAACTTCACCTACACTATCTGTCAACCCTAGCCGAAATCAATTCGACTCAACCCCTTCCTTTAATTTCCATAAACGGAATCTCAGCTCTGCTAATTTGGCACCTCCATCATTTTAG

Coding sequence (CDS)

ATGGTCAGCTTGTTGTTAGTGGAGAAGTATATTAGGCATGGAGAAGCTGTCGGAGTAATTGGGCCTTCTGGTACCGGGAAGTCTACAATACTGAAGATCATTGCAGGTCTTCTTTCTCCAGACAAGGGAGAGGTATATATTCGAGGCAGAAAGCGAGTTGGGTTGATCGATGATGAGGAGCTATCTGGTCTTCGAATTGGATTGCTTTGTGATGACCCAATTCCTCACACCGATTGGTTGGCTATGGTGATTGTTCAACGATACACGCTAAAAGACTCTTGGCCAGAGATACGTGCAACTTTACAAGCAATAATCTCACCTAGATGCTCCATCAACCCTATATCGGATGATAAAGCTCTTCTTCATGTTTACAATTATGATGTGGCGAAGCATCTTTACTCAACATCTGATTGGACTACTATTGATCAAAGAAAGCTCAAATTTCTATCTACATCTCATCCATCTTCATTCCAAAGTCAGATGATTACTTCTTATGGGGGCTGGATTGATCTTCATCATCTGTCGACTGAAAGAGGATTAATCCTCTGCTTTGCTCGCATTAAAATCAAAGAAAACCAGCGTCGCTTCATTCCTTGCAAAGTATACCTTCCTAATAAAATCGTCGGAGCCAACATCACTGTCTCCATCACTGCCTCTACTTTAGTAGCTCAGGGCCGGCGTGTTGATCTGAAACTGATGCAAGGAGCTAGCACTAATGAATCGACTGAATTTGTGGATCACAATCAATTCCCGTTTAATGATAAAGGAAAGTCTATTACCAAAATTCCAAATCAACCGAAATCACCCTCTCTCTCCCCATATTTGGAGCAGCCTATTAATTCAGCATCCCTCTCTCCTAATTATCAAATCAAGTCATTGACCGAATCTCCACAATTTATGGAGAATAATATCCTTCCTTCCCCCCAAATAAATGAATCATCAATTCCCCTCTCTCCTCCAATTAAGGAGAATATCATCATCTCTCCTCAACCAAATATTTCGGTGTACACCCTTCCTAAAATAGCAACTTCACCTACACTATCTGTCAACCCTAGCCGAAATCAATTCGACTCAACCCCTTCCTTTAATTTCCATAAACGGAATCTCAGCTCTGCTAATTTGGCACCTCCATCATTTTAG

Protein sequence

MVSLLLVEKYIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLLCDDPIPHTDWLAMVIVQRYTLKDSWPEIRATLQAIISPRCSINPISDDKALLHVYNYDVAKHLYSTSDWTTIDQRKLKFLSTSHPSSFQSQMITSYGGWIDLHHLSTERGLILCFARIKIKENQRRFIPCKVYLPNKIVGANITVSITASTLVAQGRRVDLKLMQGASTNESTEFVDHNQFPFNDKGKSITKIPNQPKSPSLSPYLEQPINSASLSPNYQIKSLTESPQFMENNILPSPQINESSIPLSPPIKENIIISPQPNISVYTLPKIATSPTLSVNPSRNQFDSTPSFNFHKRNLSSANLAPPSF

Homology

[Close]

BLAST of Clc03G12360 vs. NCBI nr
Match: XP_038876768.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 8.8e-23
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 11  IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLLC 70
           IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKR GLIDDEELSGLRIGL  
Sbjct: 110 IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRFGLIDDEELSGLRIGLGV 169

Query: 71  DDPIP 76
           +D +P
Sbjct: 170 EDRLP 174

[Close]

BLAST of Clc03G12360 vs. NCBI nr
Match: XP_011660233.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-22
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 7   VEKYIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRI 66
           V   IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRI
Sbjct: 63  VNSNIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRI 122

Query: 67  GLL 70
           GL+
Sbjct: 123 GLV 125

[Close]

BLAST of Clc03G12360 vs. NCBI nr
Match: XP_008443719.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-22
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 7   VEKYIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRI 66
           V   IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKR+GLIDDEELSGLRI
Sbjct: 63  VNSNIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRIGLIDDEELSGLRI 122

Query: 67  GLL 70
           GL+
Sbjct: 123 GLV 125

[Close]

BLAST of Clc03G12360 vs. NCBI nr
Match: XP_022988272.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-22
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 7   VEKYIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRI 66
           V   IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSG+RI
Sbjct: 64  VNSIIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGIRI 123

Query: 67  GLL 70
           GL+
Sbjct: 124 GLV 126

[Close]

BLAST of Clc03G12360 vs. NCBI nr
Match: XP_023516021.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-22
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 7   VEKYIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRI 66
           V   IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSG+RI
Sbjct: 63  VNSIIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGIRI 122

Query: 67  GLL 70
           GL+
Sbjct: 123 GLV 125

[Close]

BLAST of Clc03G12360 vs. ExPASy Swiss-Prot
Match: Q9AT00 (Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TGD3 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-22
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 11  IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLL 70
           IRHGEAVGVIGPSGTGKSTILKI+AGLL+PDKGEVYIRG+KR GLI DEE+SGLRIGL+
Sbjct: 107 IRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEEISGLRIGLV 165

[Close]

BLAST of Clc03G12360 vs. ExPASy Swiss-Prot
Match: Q98DA2 (Methionine import ATP-binding protein MetN OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=metN PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-07
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 11  IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGL--RIGL 70
           +R GE +G+IG SG GKST+++ + GL  PD GEV+I GR+ +G + + +L  L  RIG+
Sbjct: 48  VRKGEILGIIGRSGAGKSTLIRCLNGLERPDSGEVFIEGRE-IGRLGERDLQPLRRRIGM 107

[Close]

BLAST of Clc03G12360 vs. ExPASy Swiss-Prot
Match: Q58967 (Putative ABC transporter ATP-binding protein MJ1572 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1572 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.0e-07
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 2  VSLLLVEKYIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVG-LIDDEE 61
          ++L  V   I   E V ++GP+G GK+T+LKI+ GL+ PDKGEVY  G+K    ++ D+E
Sbjct: 19 IALDNVNLNIYKNEVVAILGPNGAGKTTLLKILDGLVFPDKGEVYFEGKKLTDEILRDKE 78

[Close]

BLAST of Clc03G12360 vs. ExPASy Swiss-Prot
Match: Q6MMY0 (Lipoprotein-releasing system ATP-binding protein LolD OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100) OX=264462 GN=lolD PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-06
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 11 IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDE 60
          IR GEA  ++G SG GKST+L+I+  L  P+KGE+Y  GR  + + DDE
Sbjct: 27 IREGEAFAILGASGAGKSTLLQIMGTLDRPNKGELYCEGRDLLAMSDDE 75

[Close]

BLAST of Clc03G12360 vs. ExPASy Swiss-Prot
Match: O57896 (Molybdate/tungstate import ATP-binding protein WtpC OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=wtpC PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-06
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 11 IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGL 56
          +R GE   ++GPSG+GK+ +L+IIAG++SPD+G + +RG    GL
Sbjct: 23 VREGEHFIILGPSGSGKTVLLEIIAGIISPDRGRILLRGEDITGL 67

[Close]

BLAST of Clc03G12360 vs. ExPASy TrEMBL
Match: A0A6J1JCL7 (protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485572 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.5e-23
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 7   VEKYIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRI 66
           V   IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSG+RI
Sbjct: 64  VNSIIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGIRI 123

Query: 67  GLL 70
           GL+
Sbjct: 124 GLV 126

[Close]

BLAST of Clc03G12360 vs. ExPASy TrEMBL
Match: A0A1S3B8R6 (protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487240 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.5e-23
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 7   VEKYIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRI 66
           V   IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKR+GLIDDEELSGLRI
Sbjct: 63  VNSNIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRIGLIDDEELSGLRI 122

Query: 67  GLL 70
           GL+
Sbjct: 123 GLV 125

[Close]

BLAST of Clc03G12360 vs. ExPASy TrEMBL
Match: A0A6J1KHV9 (protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111495932 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-22
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 11  IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLL 70
           IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGL+
Sbjct: 113 IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLV 171

[Close]

BLAST of Clc03G12360 vs. ExPASy TrEMBL
Match: A0A0A0LY39 (ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G659590 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-22
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 11  IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLL 70
           IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGL+
Sbjct: 110 IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLV 168

[Close]

BLAST of Clc03G12360 vs. ExPASy TrEMBL
Match: A0A6J1F2M5 (protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439208 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-22
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 11  IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLL 70
           IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGL+
Sbjct: 109 IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLV 167

[Close]

BLAST of Clc03G12360 vs. TAIR 10
Match: AT1G65410.1 (non-intrinsic ABC protein 11 )

HSP 1 Score: 109.0 bits (271), Expect = 8.5e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 11  IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLL 70
           IRHGEAVGVIGPSGTGKSTILKI+AGLL+PDKGEVYIRG+KR GLI DEE+SGLRIGL+
Sbjct: 107 IRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEEISGLRIGLV 165

[Close]

BLAST of Clc03G12360 vs. TAIR 10
Match: AT5G09930.1 (ABC transporter family protein )

HSP 1 Score: 47.0 bits (110), Expect = 4.0e-05
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 11  IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYI 48
           I  GE V +IGP+G GKST+LK+I GL  P +GEV +
Sbjct: 433 IERGEKVAIIGPNGCGKSTLLKLIMGLEKPMRGEVIL 469

[Close]

BLAST of Clc03G12360 vs. TAIR 10
Match: AT5G64840.1 (general control non-repressible 5 )

HSP 1 Score: 47.0 bits (110), Expect = 4.0e-05
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 11  IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYI 48
           I  GE + ++GP+G GKST+LK+I GL  P KGEV +
Sbjct: 447 IERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVIL 483

[Close]

BLAST of Clc03G12360 vs. TAIR 10
Match: AT1G64550.1 (general control non-repressible 3 )

HSP 1 Score: 46.6 bits (109), Expect = 5.2e-05
Identity = 20/48 (41.67%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 17  VGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGL 65
           + ++GP+G GKSTILK+I+G L P  G V+   + RV +     + GL
Sbjct: 533 IAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGL 580

[Close]

BLAST of Clc03G12360 vs. TAIR 10
Match: AT2G47800.1 (multidrug resistance-associated protein 4 )

HSP 1 Score: 45.4 bits (106), Expect = 1.2e-04
Identity = 28/103 (27.18%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 11   IRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRG--RKRVGLIDDEELSGLRIGL 70
            I+ GE VGV+G +G+GKST+++++  L+ P  G++ I G     +GL D       R G+
Sbjct: 1298 IKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRS----RFGI 1357

Query: 71   LCDDPIPHTDWLAMVI--VQRYTLKDSWPEI-RATLQAIISPR 109
            +  +P+     +   I   ++Y+ ++ W  + R  L+ +++ +
Sbjct: 1358 IPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATK 1396

The following BLAST results are available for this feature:

BLAST of Clc03G12360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876768.1	8.8e-23	90.77	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X2 [Benincasa hispi...	[more]
XP_011660233.1	1.5e-22	93.65	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X2 [Cucumis sativus...	[more]
XP_008443719.1	2.0e-22	92.06	PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X2 [Cucu...	[more]
XP_022988272.1	2.0e-22	92.06	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like isoform X3 [Cucurbita ...	[more]
XP_023516021.1	2.0e-22	92.06	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like isoform X3 [Cucurbita ...	[more]

BLAST of Clc03G12360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AT00	1.2e-22	88.14	Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q98DA2	3.2e-07	45.90	Methionine import ATP-binding protein MetN OS=Mesorhizobium japonicum (strain LM...	[more]
Q58967	7.0e-07	45.90	Putative ABC transporter ATP-binding protein MJ1572 OS=Methanocaldococcus jannas...	[more]
Q6MMY0	2.0e-06	51.02	Lipoprotein-releasing system ATP-binding protein LolD OS=Bdellovibrio bacteriovo...	[more]
O57896	2.7e-06	48.89	Molybdate/tungstate import ATP-binding protein WtpC OS=Pyrococcus horikoshii (st...	[more]

BLAST of Clc03G12360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JCL7	9.5e-23	92.06	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like isoform X3 OS=Cucurbit...	[more]
A0A1S3B8R6	9.5e-23	92.06	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X2 OS=Cucumis melo ...	[more]
A0A6J1KHV9	1.6e-22	98.31	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like OS=Cucurbita maxima OX...	[more]
A0A0A0LY39	1.6e-22	98.31	ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G65...	[more]
A0A6J1F2M5	1.6e-22	98.31	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like OS=Cucurbita moschata ...	[more]

BLAST of Clc03G12360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65410.1	8.5e-24	88.14	non-intrinsic ABC protein 11	[more]
AT5G09930.1	4.0e-05	56.76	ABC transporter family protein	[more]
AT5G64840.1	4.0e-05	54.05	general control non-repressible 5	[more]
AT1G64550.1	5.2e-05	41.67	general control non-repressible 3	[more]
AT2G47800.1	1.2e-04	27.18	multidrug resistance-associated protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 13..115 e-value: 8.6E-4 score: 28.6
IPR003439	ABC transporter-like, ATP-binding domain	PFAM	PF00005	ABC_tran	coord: 10..71 e-value: 4.6E-11 score: 43.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 7..118 e-value: 2.4E-14 score: 55.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 10..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..379
None	No IPR available	PANTHER	PTHR43023	PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC	coord: 11..69
None	No IPR available	PANTHER	PTHR43023:SF3	PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC	coord: 11..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G12360.1	Clc03G12360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding