Clc03G12210 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATCCACGTAACTCGAGATCACATAAACCTTAGCGCAGTGGATCGAAATTAGCCTCTATAAATAAAGCAAACGCCATTGATGGATTCACCGGAGCTAGGGTTTCTCCCCAATTCTCTGCCTATAAAAAAAACTTCTCCTCCAATTCGGCTCGTATTCTCTCAATCAACAAATTCAAAAAAACCCATCGATTTCTTTTGTTTTGATTGGATTTGCTAAACCCGTCGATTTCCTTTGTTTCGATTTGATTTGCTTTACCCAGAAACAAAGAAGAACAAAAAAGCAACAATCAATCGGCCATGACAGGTAAGGCGAAGCCAAAGAAGCACACGGCAAAAGAGATTGCGGCGAAGATTGACGCAGCCACCACCAACAGAGGCGGCGGAAAGGCCGGACTCGCCGACCGGTCTGGCCATGAGAAAGGCGGTCACGCCAAGTTCGAGTGCCCACACTGCAAGATTACGGCACCTGATGTCAAATCTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAGGACAAGATTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGATGCATCGAAGCCGAAACCGGGTGTGAGAGGCAGCTACAAGAAGTGAAAAAAAAAAATCCGGATTCATGAGGATGGATGATGATGACTGTGGTGGGTGGGCTCAATTCTATGGTATTGGGTACTTTTGTTTTTGTTTGTCTTTTTTCCTCTTTAAAAAGAAATCTTGGTGCCTCTATGTCTTTGATGGAAAGTGGTTTTAACTTGTAACGTGTTTGAGTAAAACATATTTGATGTCCTTGGAGCTGAGGTCTTTGCAATTATGTATATTACATAAAAACATTATCATTGTTGTTATGGTAACGATGGAGGTGTTCATGTTCTTATTGTCTCTGCTTATCATTCCATGCATTTTAGTAAGAATTAGAGTGGGCTTAAGATGCTTATGAGGGAGAGTATGTTGTGTATTTTGACATTTAGAAAGTAGATTAATGAGGAATGATTAATGGTTGACCCAGCTGTGAAAGGAGGAAATTCGTAATTCCAAATGTCATCTCTTTGGTCGTTATGGCTTGACTTGTGTAAGTTCAATGTTTGATATTTATACGGAAGAAGTTACTTGAGGTTTGCATAGTATTGAACAACGATGTTGAAGGAAAAAAAAGTATTTTCTGGCAGGGCATCACAGATTCTGGGAATAAGTTTTCATTGTTTTACCTTTTTATGATAGATGTGTTTACTTTTACAGATAGCCGTTAAAAAAGCTCAACCGTTTGGTATGATATAGTTGAAGTTGCGAATCAGATGACAACCCAAGTAATTTTATTTATGTTTTTATTCAACCATTGATTCGGTAGATTGAACCATCCACATTTGGGATGGTAGGCAAGCGCAGGTAACTTTGTTCGTTGTTGTAATAAGTTAGTTAATGCCTCATCTCTTTGTTCTACCTCAGGAGTGCCTTTGAGTTTTTGTTTGGACTTGCCTTTTTCTTTCTAAACAGAAGCTTTATAAATGAGATCTTTCCTAGCAATCTGTCAGTATTTATATTTACATATTTGTGTTGGTTTTTAAACTCAGGCTCCCATTTTACCTTTTATCACCTTGCATTTGGGCTCCAAGGAACTACTGCACCATAATTCTCTTCTTGTAGAAGGCATTGATCTTTTAGTTAAATTTGAAACCTCTTGGTATCAGGCTC CATCCACGTAACTCGAGATCACATAAACCTTAGCGCAGTGGATCGAAATTAGCCTCTATAAATAAAGCAAACGCCATTGATGGATTCACCGGAGCTAGGGTTTCTCCCCAATTCTCTGCCTATAAAAAAAACTTCTCCTCCAATTCGGCTCGTATTCTCTCAATCAACAAATTCAAAAAAACCCATCGATTTCTTTTGTTTTGATTGGATTTGCTAAACCCGTCGATTTCCTTTGTTTCGATTTGATTTGCTTTACCCAGAAACAAAGAAGAACAAAAAAGCAACAATCAATCGGCCATGACAGGTAAGGCGAAGCCAAAGAAGCACACGGCAAAAGAGATTGCGGCGAAGATTGACGCAGCCACCACCAACAGAGGCGGCGGAAAGGCCGGACTCGCCGACCGGTCTGGCCATGAGAAAGGCGGTCACGCCAAGTTCGAGTGCCCACACTGCAAGATTACGGCACCTGATGTCAAATCTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAGGACAAGATTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGATGCATCGAAGCCGAAACCGGGTGTGAGAGGCAGCTACAAGAAGTGAAAAAAAAAAATCCGGATTCATGAGGATGGATGATGATGACTGTGGCTCCCATTTTACCTTTTATCACCTTGCATTTGGGCTCCAAGGAACTACTGCACCATAATTCTCTTCTTGTAGAAGGCATTGATCTTTTAGTTAAATTTGAAACCTCTTGGTATCAGGCTC ATGACAGGTAAGGCGAAGCCAAAGAAGCACACGGCAAAAGAGATTGCGGCGAAGATTGACGCAGCCACCACCAACAGAGGCGGCGGAAAGGCCGGACTCGCCGACCGGTCTGGCCATGAGAAAGGCGGTCACGCCAAGTTCGAGTGCCCACACTGCAAGATTACGGCACCTGATGTCAAATCTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAGGACAAGATTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGATGCATCGAAGCCGAAACCGGGTGTGAGAGGCAGCTACAAGAAGTGA MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVKSMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK Homology
BLAST of Clc03G12210 vs. NCBI nr
Match: XP_038901282.1 (protein METHYLENE BLUE SENSITIVITY 1-like [Benincasa hispida]) HSP 1 Score: 209.9 bits (533), Expect = 1.0e-50 Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0
BLAST of Clc03G12210 vs. NCBI nr
Match: XP_008443699.1 (PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo] >KAA0038267.1 Zinc finger (C2H2 type) family protein [Cucumis melo var. makuwa]) HSP 1 Score: 208.4 bits (529), Expect = 3.1e-50 Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0
BLAST of Clc03G12210 vs. NCBI nr
Match: XP_022961022.1 (uncharacterized protein LOC111461652 [Cucurbita moschata] >XP_022961023.1 uncharacterized protein LOC111461652 [Cucurbita moschata] >XP_022988627.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988628.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988629.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988631.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988632.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >KAG7023763.1 hypothetical protein SDJN02_14789, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49 Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 0
BLAST of Clc03G12210 vs. NCBI nr
Match: TYK19814.1 (Zinc finger (C2H2 type) family protein [Cucumis melo var. makuwa]) HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49 Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0
BLAST of Clc03G12210 vs. NCBI nr
Match: XP_023516233.1 (uncharacterized protein LOC111780149 [Cucurbita pepo subsp. pepo] >XP_023516234.1 uncharacterized protein LOC111780149 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 204.9 bits (520), Expect = 3.4e-49 Identity = 98/105 (93.33%), Postives = 103/105 (98.10%), Query Frame = 0
BLAST of Clc03G12210 vs. ExPASy Swiss-Prot
Match: Q9M8S0 (Protein METHYLENE BLUE SENSITIVITY 1 OS=Arabidopsis thaliana OX=3702 GN=MBS1 PE=2 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 8.4e-43 Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 0
BLAST of Clc03G12210 vs. ExPASy Swiss-Prot
Match: Q9FFD8 (Protein METHYLENE BLUE SENSITIVITY 2 OS=Arabidopsis thaliana OX=3702 GN=MBS2 PE=1 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 6.6e-40 Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 0
BLAST of Clc03G12210 vs. ExPASy TrEMBL
Match: A0A5A7T9G3 (Zinc finger (C2H2 type) family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001180 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50 Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0
BLAST of Clc03G12210 vs. ExPASy TrEMBL
Match: A0A1S3B9F4 (uncharacterized protein LOC103487230 OS=Cucumis melo OX=3656 GN=LOC103487230 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50 Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0
BLAST of Clc03G12210 vs. ExPASy TrEMBL
Match: A0A6J1JHR8 (uncharacterized protein LOC111485822 OS=Cucurbita maxima OX=3661 GN=LOC111485822 PE=4 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49 Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 0
BLAST of Clc03G12210 vs. ExPASy TrEMBL
Match: A0A6J1H903 (uncharacterized protein LOC111461652 OS=Cucurbita moschata OX=3662 GN=LOC111461652 PE=4 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49 Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 0
BLAST of Clc03G12210 vs. ExPASy TrEMBL
Match: A0A5D3D8D3 (Zinc finger (C2H2 type) family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00090 PE=4 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49 Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0
BLAST of Clc03G12210 vs. TAIR 10
Match: AT3G02790.1 (zinc finger (C2H2 type) family protein ) HSP 1 Score: 174.1 bits (440), Expect = 5.9e-44 Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 0
BLAST of Clc03G12210 vs. TAIR 10
Match: AT5G16470.1 (zinc finger (C2H2 type) family protein ) HSP 1 Score: 164.5 bits (415), Expect = 4.7e-41 Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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