Clc03G12070 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G12070
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein TIC 20
Location	ClcChr03: 18297457 .. 18299759 (+)
RNA-Seq Expression	Clc03G12070
Synteny	Clc03G12070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAAGCCCTCGGAAAAGAGCGTCGTTTCATCTTCATCGCCCTCACTCTCGACGCCTCTGCCACAAAGAAATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCGTTGTTGCCGATGCTGCTGGCCGGCAGATTTAGCTTCAGGTTTGTTCTTCAACCTTTCTTCTACTTTGGGAATCTTTGGATCCAGGAGTTTGTAATTTAGGGTTTTGATTTTCCTCTGAAATTAGTGAAATTCTGAAAGTTTTGGGAGAAATCTGAATCTAATCAATGGAGGTTGGTCTTTACACCTTTAGAAGAGATGTATGAGAGAGGAATTGGAATGTGTATGTTGATTGTGCATTTTTTGGTTATAAGCGTTCTTTGCAGCTACACTGAATAAGTTTATGAAGTATTCGTGCAAGGGAAACTGTAGATAATGAGACGATTTAAATACTACTTGGTCCACCCTTTCTTATCAAGCTTTGATTTTGGTTACATACTTTCAAATTTTGTTCATTTTGTCATTTTGGTCATTTGTTTTCATTTTATTTTATTTTTTATTTTTTTATTTTTAATTTTTTTTATCAGCACACTTTGTTAACTAAATTAATTAAAATATAACTTTTAAGTTTGCATCAAAGGTTTTCTATTGGATTTTAAAATTTTGCAATAAGTATAGAGATCAAAAGACATTATGAGAATGTAGCAAATGTACAAGAATCAAATAAGCAAATGTTGAAAGTGTAGGGACACAAAATAAACCAAAGTCACAAGTTCATAGACTAAATCATGTTTTGTTTAGGCATAAGATTTATTATTGCAAATATATGTGAGGCAATCTTAAGGGGTATTTGTATGGATGACCTTAATATGGAGGCCCAAATGAAATTTGGTCAATGATTCAAATTCACACGAAAATTAGCCTTTTGCTTGTGTCAGCCATGTGTGAAATTACCAATTTATTCCCGAAACGCGCGCGAGGGCTGTAGACAACCACAGATTATCGTTTCTACCTCTCGCTCAACTTTCTTGATCTCATTTCTTCCTCTTGCTTGTTATCAAAATTTCATGCGCGTTTTGATTTCTGCTACTAATTAATGTCCCTGTAGGAATTTGCTTGAAAATGCAAAAAACTCTGGTTCTTTCAAATCAAACTAAGTAGTAGTGTTTCTTAAGTTAAGTATATGCTATTTTAAATAAAGAACAAAATGTGGAAGACAAGAAACCCATTAGACCAGACTCGTTGACTGTGGATAACCCATCTTCTAACGTTTTAGAGGCTATTGAATCGTCATATACATTCTGTTACTCATGGAAGCAAGTGAATGTAAACCTTTTCTTCGTTTATTGTTTACCACGTAATGAGAGACAAGAAAATGATAGCCAAAGTGATAGAAAATATAGGTAAGAGGAATAAATGAGAGGAAGAAAGTCGACTGAGAAAAAAGCACGAGAGGAAGAAAGTGGAGCGAGAGAAACATGAGTAATCGTGTAAACGAGAGAAGAAAGAAAGCGGGAGACAAAAATGAGAGGAAGAAACGAGAGCGAGAGTTTTATAAAATCGAAATTTATAAATTTTTTTTCTCATGCTCCAATTTTTATGTATAGAGTAGCAAAGTATGGAAGAGAAGTAGCTTTTCATTCGGTATGGTGGTGTATGGGACAACAAAGAAGAATGCTACAAGGAAGGTCGTACGAAGGGCATCATGGTGCCAAACACATTAAAT

mRNA sequence

TATAAGCCCTCGGAAAAGAGCGTCGTTTCATCTTCATCGCCCTCACTCTCGACGCCTCTGCCACAAAGAAATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCGTTGTTGCCGATGCTGCTGGCCGGCAGATTTAGCTTCAGAGTAGCAAAGTATGGAAGAGAAGTAGCTTTTCATTCGGTATGGTGGTGTATGGGACAACAAAGAAGAATGCTACAAGGAAGGTCGTACGAAGGGCATCATGGTGCCAAACACATTAAAT

Coding sequence (CDS)

ATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCGTTGTTGCCGATGCTGCTGGCCGGCAGATTTAG

Protein sequence

MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI

Homology

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BLAST of Clc03G12070 vs. NCBI nr
Match: XP_038879337.1 (protein TIC 20-II, chloroplastic [Benincasa hispida])

HSP 1 Score: 378.3 bits (970), Expect = 4.4e-101
Identity = 192/208 (92.31%), Postives = 200/208 (96.15%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MASSSIPLLNLS K+A +AALIPHSSAIKSRHRSSLPFLPSKPAKS V RMSYNPTPATD
Sbjct: 1   MASSSIPLLNLSVKTAFRAALIPHSSAIKSRHRSSLPFLPSKPAKSTVFRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           R+ISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPHASFVAFFALYLG
Sbjct: 61  RVISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHASFVAFFALYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           +VRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR GLGF+IMVWGHNGLFVFSVL
Sbjct: 121 LVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGLGFQIMVWGHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CF+YSLVSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFVYSLVSCLLGRTPHLPIVADAAGRQI 208

[Close]

BLAST of Clc03G12070 vs. NCBI nr
Match: XP_004139099.1 (protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660220.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >KGN66660.1 hypothetical protein Csa_006938 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 7.8e-98
Identity = 187/208 (89.90%), Postives = 197/208 (94.71%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS+SIPLLNLSAK++I+AAL PHSSAIKSRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIMVW HNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

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BLAST of Clc03G12070 vs. NCBI nr
Match: XP_008443678.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443681.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443682.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443683.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >KAA0038239.1 protein TIC 20-II [Cucumis melo var. makuwa] >TYK30638.1 protein TIC 20-II [Cucumis melo var. makuwa])

HSP 1 Score: 364.0 bits (933), Expect = 8.6e-97
Identity = 188/211 (89.10%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSA---VIRMSYNPTP 60
           MAS+SIPLLNLSAK+AI+AAL PHSS IKSRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 180
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of Clc03G12070 vs. NCBI nr
Match: XP_022987499.1 (protein TIC 20-II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 360.1 bits (923), Expect = 1.2e-95
Identity = 184/208 (88.46%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPS+PAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPGRSGLGF+IM W HNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSC+LGRTPHLP+VADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of Clc03G12070 vs. NCBI nr
Match: XP_022960653.1 (protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >KAG6590106.1 Protein TIC 20-II, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 359.4 bits (921), Expect = 2.1e-95
Identity = 184/208 (88.46%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPSKPAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPG+SGLGF+IM W HNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSC+LGRTPHLP+VADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of Clc03G12070 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 9.3e-62
Identity = 117/169 (69.23%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 41  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 100
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 101 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 160
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 161 SGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            G G K M+WGH G+FVFS +CF+Y +VS LLG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of Clc03G12070 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 0


Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 177
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]

BLAST of Clc03G12070 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-21
Identity = 54/151 (35.76%), Postives = 91/151 (60.26%), Query Frame = 0


Query: 60  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYL 119
           DR  SA+ Y +P  ++  +G FL  Q+PVL +   P++P+L  Y   P ASF+ F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 120 GVVRNPSFSHYVRFNSMQAVTLDVLL-VVPLLVQRILSP-GRSGLGFKIMVWGHNGLFVF 179
            VVRN + SH++RFN+MQA+ + +LL +  L+V  ++ P    GL  + +   +N  F+ 
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETL---YNFAFLG 130

Query: 180 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           ++ C  + +V  +LGR   +P ++DAA  Q+
Sbjct: 131 ALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]

BLAST of Clc03G12070 vs. ExPASy Swiss-Prot
Match: Q8GZ79 (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.7e-05
Identity = 57/225 (25.33%), Postives = 92/225 (40.89%), Query Frame = 0


Query: 3   SSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSK------PAKSAVIRMSYNPT 62
           S  +PL  LSA S++        +  +     +LP LP +      P  S  +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHAS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   V + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 GHNGLFVFSVLCFLY------SLVSCLLGRTPHLPVVADAAGRQI 209
           G  G+  ++ + F Y      S+   L G    +P V DAA  QI
Sbjct: 241 GKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQI 271

[Close]

BLAST of Clc03G12070 vs. ExPASy TrEMBL
Match: A0A0A0LXS7 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.8e-98
Identity = 187/208 (89.90%), Postives = 197/208 (94.71%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS+SIPLLNLSAK++I+AAL PHSSAIKSRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIMVW HNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]

BLAST of Clc03G12070 vs. ExPASy TrEMBL
Match: A0A1S3B9C6 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.2e-97
Identity = 188/211 (89.10%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSA---VIRMSYNPTP 60
           MAS+SIPLLNLSAK+AI+AAL PHSS IKSRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 180
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of Clc03G12070 vs. ExPASy TrEMBL
Match: A0A5D3E499 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00600 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.2e-97
Identity = 188/211 (89.10%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSA---VIRMSYNPTP 60
           MAS+SIPLLNLSAK+AI+AAL PHSS IKSRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 180
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of Clc03G12070 vs. ExPASy TrEMBL
Match: A0A6J1JJ22 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.0e-96
Identity = 184/208 (88.46%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPS+PAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPGRSGLGF+IM W HNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSC+LGRTPHLP+VADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of Clc03G12070 vs. ExPASy TrEMBL
Match: A0A6J1HBN6 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.0e-95
Identity = 184/208 (88.46%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPSKPAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPG+SGLGF+IM W HNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSC+LGRTPHLP+VADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of Clc03G12070 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 )

HSP 1 Score: 238.0 bits (606), Expect = 6.6e-63
Identity = 117/169 (69.23%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 41  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 100
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 101 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 160
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 161 SGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            G G K M+WGH G+FVFS +CF+Y +VS LLG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of Clc03G12070 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-34
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 0


Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 177
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]

BLAST of Clc03G12070 vs. TAIR 10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20 )

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-06
Identity = 57/225 (25.33%), Postives = 92/225 (40.89%), Query Frame = 0


Query: 3   SSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSK------PAKSAVIRMSYNPT 62
           S  +PL  LSA S++        +  +     +LP LP +      P  S  +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHAS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   V + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 GHNGLFVFSVLCFLY------SLVSCLLGRTPHLPVVADAAGRQI 209
           G  G+  ++ + F Y      S+   L G    +P V DAA  QI
Sbjct: 241 GKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQI 271

[Close]

BLAST of Clc03G12070 vs. TAIR 10
Match: AT1G04945.3 (HIT-type Zinc finger family protein )

HSP 1 Score: 42.0 bits (97), Expect = 7.0e-04
Identity = 47/195 (24.10%), Postives = 80/195 (41.03%), Query Frame = 0


Query: 3   SSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSK------PAKSAVIRMSYNPT 62
           S  +PL  LSA S++        +  +     +LP LP +      P  S  +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHAS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   V + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 GHNGLFVFSVLCFLY 185
           G  G+  ++ + F Y
Sbjct: 241 GKFGMHFWTAVAFAY 241

The following BLAST results are available for this feature:

BLAST of Clc03G12070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879337.1	4.4e-101	92.31	protein TIC 20-II, chloroplastic [Benincasa hispida]	[more]
XP_004139099.1	7.8e-98	89.90	protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 protein TIC 2...	[more]
XP_008443678.1	8.6e-97	89.10	PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDI...	[more]
XP_022987499.1	1.2e-95	88.46	protein TIC 20-II, chloroplastic-like [Cucurbita maxima]	[more]
XP_022960653.1	2.1e-95	88.46	protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 prote...	[more]

BLAST of Clc03G12070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82251	9.3e-62	69.23	Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=...	[more]
Q9FM67	1.4e-33	46.36	Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ...	[more]
P73387	2.7e-21	35.76	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]
Q8GZ79	4.7e-05	25.33	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ...	[more]

BLAST of Clc03G12070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXS7	3.8e-98	89.90	Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1	[more]
A0A1S3B9C6	4.2e-97	89.10	Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1	[more]
A0A5D3E499	4.2e-97	89.10	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G006...	[more]
A0A6J1JJ22	6.0e-96	88.46	Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1	[more]
A0A6J1HBN6	1.0e-95	88.46	Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1	[more]

BLAST of Clc03G12070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47840.1	6.6e-63	69.23	Uncharacterised conserved protein ycf60	[more]
AT5G55710.1	1.0e-34	46.36	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G04940.1	3.3e-06	25.33	translocon at the inner envelope membrane of chloroplasts 20	[more]
AT1G04945.3	7.0e-04	24.10	HIT-type Zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 61..204 e-value: 3.3E-45 score: 154.1
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 27..208
None	No IPR available	PANTHER	PTHR33510:SF5	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 27..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G12070.1	Clc03G12070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane