Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGATCGTGGACGAGAAGACTATATCACGATTAAGGCAACCTCACCTCAATATGAAGATCCTAAATTTTGCACATGGAGGGCTGAAAACAATCAAGTTATGAGTTGGTTAATCAACTCCATGACTACTGACATCAGAGAGAATTTTCTCTTATATTCCCCTGCAAAAGAAATTTGGGATGCTGTTCGAGATACTTTCTCAAATCAGGAGAAAACTGCTAAACTTTTTCAGATCGAGACTACTCTTCAAGATCTAAAACAAGGTGACTTATCCGTTACAACTTACTATACCACTCTGTCTCGCTATTGGCAAGAGTTGGATTTATTTGAAACTCATGAATGGAAAAATTGTGGAGACAAAAAGAATTTTCAAGTTCCTTATAAGTCTCAATAAATCTCTGGATGAAGTTTGTGGTCAAATCCTTGGTACTAAGCAACATTACCTAATCTTCGAGAAGTTTTTGCTGAAGTCCGTAAAGAAGAGAGTAGAAAGCAAGTAATGATGGAACCAACTACTGAACATCCACTTACTCCAACTGGATCTGCTCTCATTTCCCAACAAGATCATCCACATGATCCACTTGCTCTTGTGGCTCGAGAAGATAGTCAACAACGTAAAGGACGACCATGGTACAACCATTGTCATAAACCGGGGCATACCAAAGACATGGAAAACCAGCAAATTAGAAGCCAAACGCCGCAAAAACAAATCGTGAAACCAGGGGCAACAACCAACAACCTGTAG
mRNA sequence
ATGTATGATCGTGGACGAGAAGACTATATCACGATTAAGGCAACCTCACCTCAATATGAAGATCCTAAATTTTGCACATGGAGGGCTGAAAACAATCAAGTTATGAGTTGGTTAATCAACTCCATGACTACTGACATCAGAGAGAATTTTCTCTTATATTCCCCTGCAAAAGAAATTTGGGATGCTGTTCGAGATACTTTCTCAAATCAGGAGAAAACTGCTAAACTTTTTCAGATCGAGACTACTCTTCAAGATCTAAAACAAGTCCGTAAAGAAGAGAGTAGAAAGCAAGTAATGATGGAACCAACTACTGAACATCCACTTACTCCAACTGGATCTGCTCTCATTTCCCAACAAGATCATCCACATGATCCACTTGCTCTTGTGGCTCGAGAAGATAGTCAACAACGTAAAGGACGACCATGGTACAACCATTGTCATAAACCGGGGCATACCAAAGACATGGAAAACCAGCAAATTAGAAGCCAAACGCCGCAAAAACAAATCGTGAAACCAGGGGCAACAACCAACAACCTGTAG
Coding sequence (CDS)
ATGTATGATCGTGGACGAGAAGACTATATCACGATTAAGGCAACCTCACCTCAATATGAAGATCCTAAATTTTGCACATGGAGGGCTGAAAACAATCAAGTTATGAGTTGGTTAATCAACTCCATGACTACTGACATCAGAGAGAATTTTCTCTTATATTCCCCTGCAAAAGAAATTTGGGATGCTGTTCGAGATACTTTCTCAAATCAGGAGAAAACTGCTAAACTTTTTCAGATCGAGACTACTCTTCAAGATCTAAAACAAGTCCGTAAAGAAGAGAGTAGAAAGCAAGTAATGATGGAACCAACTACTGAACATCCACTTACTCCAACTGGATCTGCTCTCATTTCCCAACAAGATCATCCACATGATCCACTTGCTCTTGTGGCTCGAGAAGATAGTCAACAACGTAAAGGACGACCATGGTACAACCATTGTCATAAACCGGGGCATACCAAAGACATGGAAAACCAGCAAATTAGAAGCCAAACGCCGCAAAAACAAATCGTGAAACCAGGGGCAACAACCAACAACCTGTAG
Protein sequence
MYDRGREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAVRDTFSNQEKTAKLFQIETTLQDLKQVRKEESRKQVMMEPTTEHPLTPTGSALISQQDHPHDPLALVAREDSQQRKGRPWYNHCHKPGHTKDMENQQIRSQTPQKQIVKPGATTNNL
Homology
BLAST of Clc03G11735 vs. NCBI nr
Match:
RVW54694.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 73/187 (39.04%), Postives = 100/187 (53.48%), Query Frame = 0
Query: 4 RGREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAV 63
+G++DY+ A P D KF W ENN VM WLINSMT DI ENFLLY AKEIWDA
Sbjct: 39 KGKDDYLNGVAAKPNKTDEKFKVWNVENNMVMLWLINSMTNDIGENFLLYGTAKEIWDAA 98
Query: 64 RDTFSNQEKTAKLFQIETTLQDLKQ----------------------------------- 123
++T+SN E T +LF++E+ L D +Q
Sbjct: 99 KETYSNNENTLELFEVESVLHDFRQGELTVTQYFNTHSIATGSSWTCSRSTIEAVRVMES 158
Query: 124 -VRKEESRKQVMMEPTTEHPLTPTGSALISQQDHPHDPLALVAREDSQQRKGRPWYNHCH 155
VRKEESRK++MM ++ +T S+ ++ + +P + D + +K RPW +HC
Sbjct: 159 EVRKEESRKKIMM--GSQDSVTNPESSALAVRGNPFN------NNDHKPKKERPWCDHCR 217
BLAST of Clc03G11735 vs. NCBI nr
Match:
RVX20874.1 (hypothetical protein CK203_002528 [Vitis vinifera])
HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 73/187 (39.04%), Postives = 100/187 (53.48%), Query Frame = 0
Query: 4 RGREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAV 63
+G++DY+ A P D KF W ENN VM WLINSMT DI ENFLLY AKEIWDA
Sbjct: 39 KGKDDYLNGVAAKPNKTDEKFKVWNVENNMVMLWLINSMTNDIGENFLLYGTAKEIWDAA 98
Query: 64 RDTFSNQEKTAKLFQIETTLQDLKQ----------------------------------- 123
++T+SN E T +LF++E+ L D +Q
Sbjct: 99 KETYSNNENTLELFEVESVLHDFRQGELTVTQYFNTHSIATGSSWTCSRSTIEAVRVMES 158
Query: 124 -VRKEESRKQVMMEPTTEHPLTPTGSALISQQDHPHDPLALVAREDSQQRKGRPWYNHCH 155
VRKEESRK++MM ++ +T S+ ++ + +P + D + +K RPW +HC
Sbjct: 159 EVRKEESRKKIMM--GSQDSVTNPESSALAVRGNPFN------NNDHKPKKERPWCDHCR 217
BLAST of Clc03G11735 vs. NCBI nr
Match:
RVW61840.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 130.2 bits (326), Expect = 1.8e-26
Identity = 76/181 (41.99%), Postives = 103/181 (56.91%), Query Frame = 0
Query: 4 RGREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAV 63
RG ++Y+ SP+ +D +F W ENN VM WLIN+M T+I +NFL Y A EIW A
Sbjct: 55 RGNDEYLFSTTESPKKDDKRFKVWNTENNLVMPWLINAMDTEIGQNFLFYDTAHEIWMAA 114
Query: 64 RDTFSNQEKTAKLFQIETTLQDLKQ--------------------------VRKEESRKQ 123
++T+S+ + TA LF I+ L DLKQ VR+EESRK+
Sbjct: 115 KETYSDSDNTADLFDIKGALHDLKQDKSLDEVRGRILGTKPLPTIREAFSEVRREESRKK 174
Query: 124 VMMEPTTEHPLTPTGSALISQ-QDHPHDPLALVAR---EDSQQRKGRPWYNHCHKPGHTK 155
+MM T GSALISQ + + ALV+R D++Q+K RPW +HCH+PGHTK
Sbjct: 175 LMM-GTRPFSNVQEGSALISQGSTNIQEGTALVSRGSTYDARQKKARPWCDHCHRPGHTK 234
BLAST of Clc03G11735 vs. NCBI nr
Match:
RVW63220.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 128.6 bits (322), Expect = 5.2e-26
Identity = 71/186 (38.17%), Postives = 100/186 (53.76%), Query Frame = 0
Query: 4 RGREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAV 63
+G++DY+ A D KF W AENN VMSWLINSM DI ENFLLY KEIWDA
Sbjct: 61 KGKDDYLNGVAAKSNKTDEKFKVWNAENNMVMSWLINSMANDIGENFLLYGTTKEIWDAA 120
Query: 64 RDTFSNQEKTAKLFQIETTLQDLKQ----------------------------------- 123
++T+SN E T++LF++E+ L D +Q
Sbjct: 121 KETYSNNENTSELFEVESVLHDFRQGELTVTQYFNTLNRSGSSWTCSRSTIGAVWVMESE 180
Query: 124 VRKEESRKQVMMEPTTEHPLTPTGSALISQQDHPHDPLALVAREDSQQRKGRPWYNHCHK 155
VR+EES K++MM ++ +T S+ ++ + +P + D + +KGRPW +HC +
Sbjct: 181 VRREESGKKIMM--GSQDSVTNPESSALAVRGNPSN------NNDHRPKKGRPWCDHCRR 238
BLAST of Clc03G11735 vs. NCBI nr
Match:
RVW60619.1 (Copia protein [Vitis vinifera])
HSP 1 Score: 128.6 bits (322), Expect = 5.2e-26
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 0
Query: 5 GREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAVR 64
G+E+Y+T P+ +DP + TW+ EN+ VMSWLINSMT DI ENF+ Y AKEIWDA R
Sbjct: 36 GKEEYLTGAIVQPKEDDPGYRTWKLENSMVMSWLINSMTNDIGENFMYYGTAKEIWDAAR 95
Query: 65 DTFSNQEKTAKLFQIETTLQDLKQ-----------VRKEESRKQVMMEPTTEHPLTPTGS 124
+T+SN + T+ +F+I++ LQDL+Q + +EESR++VM+ T S
Sbjct: 96 ETYSNIDNTSAIFEIKSILQDLRQGDSTVTEYFNILSREESRQKVML-GTQNSSKNLENS 155
Query: 125 ALISQQDHPHDPLALVAREDSQQRKGRPWYNHCHKPGHTK 154
AL+++ ++ + Q +K RPW HC KPGH K
Sbjct: 156 ALVARGTQSNN-------NNHQTKKNRPWCEHCRKPGHMK 187
BLAST of Clc03G11735 vs. ExPASy TrEMBL
Match:
A0A438KI33 (Retrotran_gag_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_002528 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27
Identity = 73/187 (39.04%), Postives = 100/187 (53.48%), Query Frame = 0
Query: 4 RGREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAV 63
+G++DY+ A P D KF W ENN VM WLINSMT DI ENFLLY AKEIWDA
Sbjct: 39 KGKDDYLNGVAAKPNKTDEKFKVWNVENNMVMLWLINSMTNDIGENFLLYGTAKEIWDAA 98
Query: 64 RDTFSNQEKTAKLFQIETTLQDLKQ----------------------------------- 123
++T+SN E T +LF++E+ L D +Q
Sbjct: 99 KETYSNNENTLELFEVESVLHDFRQGELTVTQYFNTHSIATGSSWTCSRSTIEAVRVMES 158
Query: 124 -VRKEESRKQVMMEPTTEHPLTPTGSALISQQDHPHDPLALVAREDSQQRKGRPWYNHCH 155
VRKEESRK++MM ++ +T S+ ++ + +P + D + +K RPW +HC
Sbjct: 159 EVRKEESRKKIMM--GSQDSVTNPESSALAVRGNPFN------NNDHKPKKERPWCDHCR 217
BLAST of Clc03G11735 vs. ExPASy TrEMBL
Match:
A0A438F3U7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1896 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27
Identity = 73/187 (39.04%), Postives = 100/187 (53.48%), Query Frame = 0
Query: 4 RGREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAV 63
+G++DY+ A P D KF W ENN VM WLINSMT DI ENFLLY AKEIWDA
Sbjct: 39 KGKDDYLNGVAAKPNKTDEKFKVWNVENNMVMLWLINSMTNDIGENFLLYGTAKEIWDAA 98
Query: 64 RDTFSNQEKTAKLFQIETTLQDLKQ----------------------------------- 123
++T+SN E T +LF++E+ L D +Q
Sbjct: 99 KETYSNNENTLELFEVESVLHDFRQGELTVTQYFNTHSIATGSSWTCSRSTIEAVRVMES 158
Query: 124 -VRKEESRKQVMMEPTTEHPLTPTGSALISQQDHPHDPLALVAREDSQQRKGRPWYNHCH 155
VRKEESRK++MM ++ +T S+ ++ + +P + D + +K RPW +HC
Sbjct: 159 EVRKEESRKKIMM--GSQDSVTNPESSALAVRGNPFN------NNDHKPKKERPWCDHCR 217
BLAST of Clc03G11735 vs. ExPASy TrEMBL
Match:
A0A438FPE6 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2936 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 8.7e-27
Identity = 76/181 (41.99%), Postives = 103/181 (56.91%), Query Frame = 0
Query: 4 RGREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAV 63
RG ++Y+ SP+ +D +F W ENN VM WLIN+M T+I +NFL Y A EIW A
Sbjct: 55 RGNDEYLFSTTESPKKDDKRFKVWNTENNLVMPWLINAMDTEIGQNFLFYDTAHEIWMAA 114
Query: 64 RDTFSNQEKTAKLFQIETTLQDLKQ--------------------------VRKEESRKQ 123
++T+S+ + TA LF I+ L DLKQ VR+EESRK+
Sbjct: 115 KETYSDSDNTADLFDIKGALHDLKQDKSLDEVRGRILGTKPLPTIREAFSEVRREESRKK 174
Query: 124 VMMEPTTEHPLTPTGSALISQ-QDHPHDPLALVAR---EDSQQRKGRPWYNHCHKPGHTK 155
+MM T GSALISQ + + ALV+R D++Q+K RPW +HCH+PGHTK
Sbjct: 175 LMM-GTRPFSNVQEGSALISQGSTNIQEGTALVSRGSTYDARQKKARPWCDHCHRPGHTK 234
BLAST of Clc03G11735 vs. ExPASy TrEMBL
Match:
A0A438FTD2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_648 PE=4 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 2.5e-26
Identity = 71/186 (38.17%), Postives = 100/186 (53.76%), Query Frame = 0
Query: 4 RGREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAV 63
+G++DY+ A D KF W AENN VMSWLINSM DI ENFLLY KEIWDA
Sbjct: 61 KGKDDYLNGVAAKSNKTDEKFKVWNAENNMVMSWLINSMANDIGENFLLYGTTKEIWDAA 120
Query: 64 RDTFSNQEKTAKLFQIETTLQDLKQ----------------------------------- 123
++T+SN E T++LF++E+ L D +Q
Sbjct: 121 KETYSNNENTSELFEVESVLHDFRQGELTVTQYFNTLNRSGSSWTCSRSTIGAVWVMESE 180
Query: 124 VRKEESRKQVMMEPTTEHPLTPTGSALISQQDHPHDPLALVAREDSQQRKGRPWYNHCHK 155
VR+EES K++MM ++ +T S+ ++ + +P + D + +KGRPW +HC +
Sbjct: 181 VRREESGKKIMM--GSQDSVTNPESSALAVRGNPSN------NNDHRPKKGRPWCDHCRR 238
BLAST of Clc03G11735 vs. ExPASy TrEMBL
Match:
A0A438FKT6 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_360 PE=4 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 2.5e-26
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 0
Query: 5 GREDYITIKATSPQYEDPKFCTWRAENNQVMSWLINSMTTDIRENFLLYSPAKEIWDAVR 64
G+E+Y+T P+ +DP + TW+ EN+ VMSWLINSMT DI ENF+ Y AKEIWDA R
Sbjct: 36 GKEEYLTGAIVQPKEDDPGYRTWKLENSMVMSWLINSMTNDIGENFMYYGTAKEIWDAAR 95
Query: 65 DTFSNQEKTAKLFQIETTLQDLKQ-----------VRKEESRKQVMMEPTTEHPLTPTGS 124
+T+SN + T+ +F+I++ LQDL+Q + +EESR++VM+ T S
Sbjct: 96 ETYSNIDNTSAIFEIKSILQDLRQGDSTVTEYFNILSREESRQKVML-GTQNSSKNLENS 155
Query: 125 ALISQQDHPHDPLALVAREDSQQRKGRPWYNHCHKPGHTK 154
AL+++ ++ + Q +K RPW HC KPGH K
Sbjct: 156 ALVARGTQSNN-------NNHQTKKNRPWCEHCRKPGHMK 187
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| RVW54694.1 | 1.1e-26 | 39.04 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
| RVX20874.1 | 1.1e-26 | 39.04 | hypothetical protein CK203_002528 [Vitis vinifera] | [more] |
| RVW61840.1 | 1.8e-26 | 41.99 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
| RVW63220.1 | 5.2e-26 | 38.17 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
| RVW60619.1 | 5.2e-26 | 42.50 | Copia protein [Vitis vinifera] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A438KI33 | 5.1e-27 | 39.04 | Retrotran_gag_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_00... | [more] |
| A0A438F3U7 | 5.1e-27 | 39.04 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
| A0A438FPE6 | 8.7e-27 | 41.99 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
| A0A438FTD2 | 2.5e-26 | 38.17 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
| A0A438FKT6 | 2.5e-26 | 42.50 | Copia protein OS=Vitis vinifera OX=29760 GN=GIP_360 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
