Clc03G10850 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACGCAGTGCACGCGATGAACTCGACAGCATTTGTAGACTGCCCGCAATGTGGTGGGGGGCACTTGTATGACATGTGTATCTACAACCTCCAGTTTATCTGCAGTATTCAAAACAACCGCTACGACAATTTGGGTTGAAGGAACCACCTTAACTTCGGATGGGGTGGGAATCAACAACAAACGCAGAAGGCTGAGCAGCAGCCGCAGAGAGGTAATCCTCCTGGTTTCAACCAATGGAATCAAGGCTGGTTTCATCAGTATTTGAGGGATCCGCAAGCGGACGAATTAGCCTCATTGTCTTCCCTGGAATCTCTTTTACGAAAAGAAAACAGTAAAATTGAAGCAACGCGCCAGTTGGACGAAGCGATGCTCCAGAACCAAGCCGCTGCGATTCGCAATATAGAAATTCACGTGAATCAAATTGCAGAGGAGCTCGAAAATGAAAATCAAGAAGCATTGCTAAGTACGACCGAAGTTCCAAGAGGGAACTTAGGAGAACAATGTCAAGGTGAGACATTGTTAAGTGGGAAAATCAATCCCACAGTGCATAATGAGTGGTCGCAAGGAAACTTGCAACCCCTAAATGTCACACCCCCTCCCAGATTACCCACCTAA ATGAACGCAGTGCACGCGATGAACTCGACAGCATTTGTAGACTGCCCGCAATGTGGTGGGGGGCACTTGAACCACCTTAACTTCGGATGGGGTGGGAATCAACAACAAACGCAGAAGGCTGAGCAGCAGCCGCAGAGAGGTAATCCTCCTGGTTTCAACCAATGGAATCAAGGCTGGTTTCATCAGTATTTGAGGGATCCGCAAGCGGACGAATTAGCCTCATTGTCTTCCCTGGAATCTCTTTTACGAAAAGAAAACAGTAAAATTGAAGCAACGCGCCAGTTGGACGAAGCGATGCTCCAGAACCAAGCCGCTGCGATTCGCAATATAGAAATTCACGTGAATCAAATTGCAGAGGAGCTCGAAAATGAAAATCAAGAAGCATTGCTAAGTACGACCGAAGTTCCAAGAGGGAACTTAGGAGAACAATGTCAAGGTGAGACATTGTTAAGTGGGAAAATCAATCCCACAGTGCATAATGAGTGGTCGCAAGGAAACTTGCAACCCCTAAATGTCACACCCCCTCCCAGATTACCCACCTAA ATGAACGCAGTGCACGCGATGAACTCGACAGCATTTGTAGACTGCCCGCAATGTGGTGGGGGGCACTTGAACCACCTTAACTTCGGATGGGGTGGGAATCAACAACAAACGCAGAAGGCTGAGCAGCAGCCGCAGAGAGGTAATCCTCCTGGTTTCAACCAATGGAATCAAGGCTGGTTTCATCAGTATTTGAGGGATCCGCAAGCGGACGAATTAGCCTCATTGTCTTCCCTGGAATCTCTTTTACGAAAAGAAAACAGTAAAATTGAAGCAACGCGCCAGTTGGACGAAGCGATGCTCCAGAACCAAGCCGCTGCGATTCGCAATATAGAAATTCACGTGAATCAAATTGCAGAGGAGCTCGAAAATGAAAATCAAGAAGCATTGCTAAGTACGACCGAAGTTCCAAGAGGGAACTTAGGAGAACAATGTCAAGGTGAGACATTGTTAAGTGGGAAAATCAATCCCACAGTGCATAATGAGTGGTCGCAAGGAAACTTGCAACCCCTAAATGTCACACCCCCTCCCAGATTACCCACCTAA MNAVHAMNSTAFVDCPQCGGGHLNHLNFGWGGNQQQTQKAEQQPQRGNPPGFNQWNQGWFHQYLRDPQADELASLSSLESLLRKENSKIEATRQLDEAMLQNQAAAIRNIEIHVNQIAEELENENQEALLSTTEVPRGNLGEQCQGETLLSGKINPTVHNEWSQGNLQPLNVTPPPRLPT Homology
BLAST of Clc03G10850 vs. NCBI nr
Match: WP_217833202.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 127.5 bits (319), Expect = 1.2e-25 Identity = 78/156 (50.00%), Postives = 94/156 (60.26%), Query Frame = 0
BLAST of Clc03G10850 vs. NCBI nr
Match: XP_038889363.1 (uncharacterized protein LOC120079279 [Benincasa hispida]) HSP 1 Score: 88.2 bits (217), Expect = 7.9e-14 Identity = 62/151 (41.06%), Postives = 80/151 (52.98%), Query Frame = 0
BLAST of Clc03G10850 vs. NCBI nr
Match: XP_030510138.1 (uncharacterized protein LOC115724905 [Cannabis sativa]) HSP 1 Score: 76.6 bits (187), Expect = 2.4e-10 Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 0
BLAST of Clc03G10850 vs. NCBI nr
Match: XP_030503898.1 (uncharacterized protein LOC115719117 [Cannabis sativa]) HSP 1 Score: 76.3 bits (186), Expect = 3.1e-10 Identity = 52/149 (34.90%), Postives = 86/149 (57.72%), Query Frame = 0
BLAST of Clc03G10850 vs. NCBI nr
Match: XP_038885789.1 (uncharacterized protein LOC120076081 [Benincasa hispida]) HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09 Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 0
BLAST of Clc03G10850 vs. ExPASy TrEMBL
Match: A0A6J1DWK1 (uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025053 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 9.1e-08 Identity = 50/141 (35.46%), Postives = 74/141 (52.48%), Query Frame = 0
BLAST of Clc03G10850 vs. ExPASy TrEMBL
Match: A0A5B6VWJ0 (Retroelement pol polyprotein-like OS=Gossypium australe OX=47621 GN=EPI10_024080 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 8.5e-06 Identity = 57/155 (36.77%), Postives = 75/155 (48.39%), Query Frame = 0
BLAST of Clc03G10850 vs. ExPASy TrEMBL
Match: A0A6J1BDW4 (uncharacterized protein LOC110426584 OS=Herrania umbratica OX=108875 GN=LOC110426584 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 7.2e-05 Identity = 51/134 (38.06%), Postives = 66/134 (49.25%), Query Frame = 0
BLAST of Clc03G10850 vs. ExPASy TrEMBL
Match: A0A6J1AB81 (uncharacterized protein LOC110416390 OS=Herrania umbratica OX=108875 GN=LOC110416390 PE=4 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 3.6e-04 Identity = 57/185 (30.81%), Postives = 79/185 (42.70%), Query Frame = 0
BLAST of Clc03G10850 vs. ExPASy TrEMBL
Match: A0A6J0ZX64 (LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica OX=108875 GN=LOC110412945 PE=4 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 3.6e-04 Identity = 49/134 (36.57%), Postives = 65/134 (48.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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