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Clc03G10800 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTGGTGTGATGTGTCCTGGAGTAACTAAAAACAAAGGCAAAAACGTCCTTCTCAACCAAACGAGACCAGATTTTGCATATAATAACCCTAAACCCTTTGATTTCTTCCCTTTTAAAGTCACGAGAGGCTTCCTGTTGTCTCTTTGTTGTTGTTTCAAGAGAGAGAGAGAGAGAGTGGCAGATGAACTGATAGAGAACTTTCAAAGCTCTTTTTCTTCAACACCCCATTACTCAACTACCATCTTTCTCAAACTCCAAGTCTTCTTTTTATTATTATTATAATTAATTTTCTAATACTCTCCCTACTTCCTCATCTCCCACCATACTCTCTCTTTCTGTCTGTTTCATCATGTAATTAACTCATCCCCACACACAAAAAGAAAAAAACAAACCCTCTTCTTTTTTCGTTTAATTAATTAGTATATGTATGTTTTGAAATAACTGATGTTGTTTAATTTGTTGGTTTGCAGGCGATCCGAGGGGAGCCCTTTGGACCTCAACAACTTACCTGAAGATTATATCAGAGATGGGAAACAGATTATTGAAGATAGCTCTAGTGGTAAACTAAATAAAAGTATTAATGATGATTTGGGAGTTAATAAAATGGTGGGAAGAGAGTTGAGTAAAATGGTCAGTACTGTGTTGTTTGCAGGACATCGGAAAAAGAAAAGTGGGTTGAAGGAAGGAAAAGAGGAGTCCGGAAAAGTGTATGAATGCAGGTTTTGTTCACTCAAGTTTTGCAAATCCCAGGCTCTTGGTGGCCACATGAACCGCCACCGCCAAGGCAAAATTACTACTCTTTTATTTATTTATTTATTTATTATTATTATTATTTTAATGAATGATTAGTCATGTCATGGAGGAGGCAGTTTTGGGGGTATTTTGTTTTGTTTTTGTTTTATGGGTGAATTATTATTAGTTAGAGCAGCAGATTTGTTTGTGTGTGATTTGATTTTTGACTTCATTTGTGTTTGGTTTTTGGTCAGAGAGAGAGACAGAGACACTGAATCGAGCTCGTCAGCTTGTTTTCAGTAACGATAACCTCGCCGCCCAACCACCACCTCCTCCTCCTCATTTAGGGTATTCATCTCTCTCTCTTCTTTCTCACCTTCCATTCTTAAACTTCTCATCTTTTAATTCTTTATTTAATCCCCAGTTCAACCTACTTACATTTTCCTACCTATTGTATATACCCCCAGAAAAAAAACTTTTAAATTTTACCTATATAAAACATAAACTAAAAGAGTGAGAGAAGGTACATCTCACAATGGCATAGATTTCCTTTTTTTTCTTTTAATAACATGTAGATTGGAAAATCCAAGCTCTAAACTCTTCATGATAACAAGAGCCCTATATTAATTGAGTTATGCTCGTTTTGACTAAAAGATACATGAATTCCATGGTGGTTTCTCTTATTATCAGTTAATTTTATGATATTTATCTAATTCCACCTATTTTCAAATCTAACCAACTATTAAGCAATATTTGGAAAGATTAAAAAAATTTGCAACATGTTTTACTGTAATAAAATAGTTTTTCTCTAATTTTCCTCTTTTAATTTCTAGATTTGAAAGATTACACGTCCCTATAAAATTTGTGTTTTTTTGGGTGATTAGGTGCTGCCATTCAATGGCACCGGCGAACTACCACACCGCGGGCGGCAGCAGCGGCGTAGGAAGTGATTCAACCCTGCCTCTTAGATTTTCAACGAGAATGTTCTCCGGGTCCTCCCCAAGCACCCTTTTGCCGCAGCCGCCGCCACCACCACTACCTCCGTCACACCAGCCATATCTATACAGCTCGCCATCACGGCCTTCGAGTTTCCCTTCCTACTATCCTCCTCCACAAGCCACTATCAACGACTACTACGTGGGGCATGTCTTGGGGAACCCTTCACAGTGCAGCCATCAGACAGTGAACTACGGTTCCGGCTCGGTGGAGTCGAGTAGCTACACTTGTATCGGAGCTCCGGTAGGGCACGGGGCGGCGTTTGGTGGACGAGATGGCGGTGGCAGTGGCGGTAGAGACGGATCGCAGCAGCAGCAGCGTTTGGACGTTCCTTCTTCGATCAATCGGTTTCAAGATGGATTCTAAAAAGAAGATTAGAATATTTTTTGTTTTAAAATTTTTCTGAGTAATGTTATTGAAATTCTGCAATGACACGCCACCCAGAGAAAGAGAGAGACATAACAAGCTGACAAATGGGGTCATAAATCATAATACAAGGGAA ATGGTTGGTGTGATGTGTCCTGGAGTAACTAAAAACAAAGGCAAAAACGTCCTTCTCAACCAAACGAGACCAGATTTTGCATATAATAACCCTAAACCCTTTGATTTCTTCCCTTTTAAAGTCACGAGAGGCTTCCTGTTGCGATCCGAGGGGAGCCCTTTGGACCTCAACAACTTACCTGAAGATTATATCAGAGATGGGAAACAGATTATTGAAGATAGCTCTAGTGAGAGAGAGACAGAGACACTGAATCGAGCTCGTCAGCTTGTTTTCAGTAACGATAACCTCGCCGCCCAACCACCACCTCCTCCTCCTCATTTAGGGTGCTGCCATTCAATGGCACCGGCGAACTACCACACCGCGGGCGGCAGCAGCGGCGTAGGAAGTGATTCAACCCTGCCTCTTAGATTTTCAACGAGAATGTTCTCCGGGTCCTCCCCAAGCACCCTTTTGCCGCAGCCGCCGCCACCACCACTACCTCCGTCACACCAGCCATATCTATACAGCTCGCCATCACGGCCTTCGAGTTTCCCTTCCTACTATCCTCCTCCACAAGCCACTATCAACGACTACTACGTGGGGCATGTCTTGGGGAACCCTTCACAGTGCAGCCATCAGACAGTGAACTACGGTTCCGGCTCGGTGGAGTCGAGTAGCTACACTTGTATCGGAGCTCCGGTAGGGCACGGGGCGGCGTTTGGTGGACGAGATGGCGGTGGCAGTGGCGGTAGAGACGGATCGCAGCAGCAGCAGCGTTTGGACGTTCCTTCTTCGATCAATCGGTTTCAAGATGGATTCTAAAAAGAAGATTAGAATATTTTTTGTTTTAAAATTTTTCTGAGTAATGTTATTGAAATTCTGCAATGACACGCCACCCAGAGAAAGAGAGAGACATAACAAGCTGACAAATGGGGTCATAAATCATAATACAAGGGAA ATGGTTGGTGTGATGTGTCCTGGAGTAACTAAAAACAAAGGCAAAAACGTCCTTCTCAACCAAACGAGACCAGATTTTGCATATAATAACCCTAAACCCTTTGATTTCTTCCCTTTTAAAGTCACGAGAGGCTTCCTGTTGCGATCCGAGGGGAGCCCTTTGGACCTCAACAACTTACCTGAAGATTATATCAGAGATGGGAAACAGATTATTGAAGATAGCTCTAGTGAGAGAGAGACAGAGACACTGAATCGAGCTCGTCAGCTTGTTTTCAGTAACGATAACCTCGCCGCCCAACCACCACCTCCTCCTCCTCATTTAGGGTGCTGCCATTCAATGGCACCGGCGAACTACCACACCGCGGGCGGCAGCAGCGGCGTAGGAAGTGATTCAACCCTGCCTCTTAGATTTTCAACGAGAATGTTCTCCGGGTCCTCCCCAAGCACCCTTTTGCCGCAGCCGCCGCCACCACCACTACCTCCGTCACACCAGCCATATCTATACAGCTCGCCATCACGGCCTTCGAGTTTCCCTTCCTACTATCCTCCTCCACAAGCCACTATCAACGACTACTACGTGGGGCATGTCTTGGGGAACCCTTCACAGTGCAGCCATCAGACAGTGAACTACGGTTCCGGCTCGGTGGAGTCGAGTAGCTACACTTGTATCGGAGCTCCGGTAGGGCACGGGGCGGCGTTTGGTGGACGAGATGGCGGTGGCAGTGGCGGTAGAGACGGATCGCAGCAGCAGCAGCGTTTGGACGTTCCTTCTTCGATCAATCGGTTTCAAGATGGATTCTAA MVGVMCPGVTKNKGKNVLLNQTRPDFAYNNPKPFDFFPFKVTRGFLLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSERETETLNRARQLVFSNDNLAAQPPPPPPHLGCCHSMAPANYHTAGGSSGVGSDSTLPLRFSTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPSSFPSYYPPPQATINDYYVGHVLGNPSQCSHQTVNYGSGSVESSSYTCIGAPVGHGAAFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF Homology
BLAST of Clc03G10800 vs. NCBI nr
Match: TYK04130.1 (zinc finger protein JAGGED [Cucumis melo var. makuwa]) HSP 1 Score: 389.0 bits (998), Expect = 3.2e-104 Identity = 217/294 (73.81%), Postives = 222/294 (75.51%), Query Frame = 0
BLAST of Clc03G10800 vs. NCBI nr
Match: XP_008465782.1 (PREDICTED: zinc finger protein JAGGED [Cucumis melo]) HSP 1 Score: 386.0 bits (990), Expect = 2.7e-103 Identity = 207/265 (78.11%), Postives = 211/265 (79.62%), Query Frame = 0
BLAST of Clc03G10800 vs. NCBI nr
Match: XP_038876123.1 (zinc finger protein JAGGED-like [Benincasa hispida]) HSP 1 Score: 385.6 bits (989), Expect = 3.5e-103 Identity = 208/269 (77.32%), Postives = 214/269 (79.55%), Query Frame = 0
BLAST of Clc03G10800 vs. NCBI nr
Match: KAA0047421.1 (zinc finger protein JAGGED [Cucumis melo var. makuwa]) HSP 1 Score: 385.6 bits (989), Expect = 3.5e-103 Identity = 217/303 (71.62%), Postives = 222/303 (73.27%), Query Frame = 0
BLAST of Clc03G10800 vs. NCBI nr
Match: XP_011655169.1 (zinc finger protein JAGGED [Cucumis sativus]) HSP 1 Score: 382.1 bits (980), Expect = 3.9e-102 Identity = 205/265 (77.36%), Postives = 210/265 (79.25%), Query Frame = 0
BLAST of Clc03G10800 vs. ExPASy Swiss-Prot
Match: Q6S591 (Zinc finger protein JAGGED OS=Arabidopsis thaliana OX=3702 GN=JAG PE=1 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 6.4e-15 Identity = 89/278 (32.01%), Postives = 119/278 (42.81%), Query Frame = 0
BLAST of Clc03G10800 vs. ExPASy Swiss-Prot
Match: Q9LG97 (Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SL1 PE=2 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.4e-09 Identity = 79/260 (30.38%), Postives = 106/260 (40.77%), Query Frame = 0
BLAST of Clc03G10800 vs. ExPASy TrEMBL
Match: A0A5D3BYD4 (Zinc finger protein JAGGED OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00720 PE=4 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 1.5e-104 Identity = 217/294 (73.81%), Postives = 222/294 (75.51%), Query Frame = 0
BLAST of Clc03G10800 vs. ExPASy TrEMBL
Match: A0A1S3CQ11 (zinc finger protein JAGGED OS=Cucumis melo OX=3656 GN=LOC103503384 PE=4 SV=1) HSP 1 Score: 386.0 bits (990), Expect = 1.3e-103 Identity = 207/265 (78.11%), Postives = 211/265 (79.62%), Query Frame = 0
BLAST of Clc03G10800 vs. ExPASy TrEMBL
Match: A0A5A7U1F5 (Zinc finger protein JAGGED OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00090 PE=4 SV=1) HSP 1 Score: 385.6 bits (989), Expect = 1.7e-103 Identity = 217/303 (71.62%), Postives = 222/303 (73.27%), Query Frame = 0
BLAST of Clc03G10800 vs. ExPASy TrEMBL
Match: A0A0A0KTC2 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G372190 PE=4 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 3.2e-102 Identity = 205/264 (77.65%), Postives = 209/264 (79.17%), Query Frame = 0
BLAST of Clc03G10800 vs. ExPASy TrEMBL
Match: A0A6J1I6U1 (zinc finger protein JAGGED-like OS=Cucurbita maxima OX=3661 GN=LOC111470498 PE=4 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 8.0e-85 Identity = 185/268 (69.03%), Postives = 197/268 (73.51%), Query Frame = 0
BLAST of Clc03G10800 vs. TAIR 10
Match: AT1G68480.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 82.8 bits (203), Expect = 4.6e-16 Identity = 89/278 (32.01%), Postives = 119/278 (42.81%), Query Frame = 0
BLAST of Clc03G10800 vs. TAIR 10
Match: AT1G13400.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 43.9 bits (102), Expect = 2.3e-04 Identity = 63/229 (27.51%), Postives = 86/229 (37.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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