Clc03G08380 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G08380
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionzf-RVT domain-containing protein
LocationClcChr03: 8624247 .. 8625860 (+)
RNA-Seq ExpressionClc03G08380
SyntenyClc03G08380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCGAAACCGGTTTCCCTTCCTTTCCAATCTGCCTGGTGATTAAGATGAATTTGGTTACCCATCTAATTTAACATTTGTTTTTTCTAGGAAACACCAAATTGCTAAAATCACCATAAATTATCATCTTAGTTGCAATTATACATTCAAACTTTTAATTGTAAAAATTAGTCCCTCAAATTAGTACAAGTGTTAAAATTGGATACAAATAATTGTAGAAATTAAAACTTATATTATATTGTTATAGTTTTTATAATTATGTAAGTTTGAGGGTCTAATTTTAAAATTTGTTAATTATTCTATGTTCGTTATGGTCTTTTCGCCTAATGTGTTGCAAGGATCATATATGCATTCACCTACGGCATTATTTGGGTCTTCCATCATTTTTTTCTAGGAAGAGTTCTTAGAACTCTCAAAAAATTATTAAGGATGGGATGTGTAAAGTTATTTAGGAGTGGAAAAGAAATTTTTTCTCCATTAGGGCAAAGGAAGTCTCATTAAGAGTGTGATGCAAGCTATTTCGATTTATGCTATAAGCTGCTTTAGGCTCTCTAAAGGTTTTTGTTTTGATCTGATGAAGATTTGTGCTAAATTTTGGTGGGGTGGTTCCGAGGATCAGAAGAAGATCCATTGGTTGAAATGAGAAAAGCTTTGTTATCCAAAAGATATGGGGATTAAATTTTAAGGACTTAGAATTACTTAATTAAGCGTTATTGGCTAAACAAGTGTGGAGAATTTTGTCGAATCCTTATTCCTTAGTGGGTCTTGTTTTAAAGGGCATGTATTTTCCCCATTGTTCTTTGTTAGAAGCTTCCTGGATTTTGTTGGGGTAGGCACTTGTTGGTTAGGGGTATGTGTAAACAAATTGGTGATGATAGGTCAAATTTGGTCTTTGAGGATCCATGGATTCCGAGACCATCCACTTTCAGGTTGTTATCACATGGGCCTGTAAATAGGGTTCAAATGGTAGCTAATCTCGTTTCTCCTTCAGGTTTGTTAAATATCCAAAAATTAAGGGAGGCATTGATGTTAGAAGATGTAGAGGAAATCCTTCGGATTCCTATATATCCAACTAATAGAGTTGATTGTTGAATTTGACACTATGTAACAAGGGTGAGTACTCGGTGAAGAGTGGCTATAAATGTGCTATTTTTCGTAGAATTTTGAGCCAGGGGTACGGGTCAGTTGTAGTGTCGACGTGGTGGAATTGTCTTTGGAAGCTTCCTATTCCTGCAAAAGTTAGCTTTGTTTGTTTGGAAGTCATGCCATGAGAGTATTCTAGCGTTTGTTCCACTACGGCATAGGGGTATAGCACTTCGTCCTTGGTGTCAGGTGTGTAGGCGTAAGGAGGAATCCATGAGTCATGCTCTATTTGGGTGTAATCGAGCTAAACGCTTCTGGTCATCTATATTTGGATTGAGATAGTGTGTTAATGCTAAGCATTTTAGTTGTTTAGATATATGGATTGAGTTGGGCAAGGTGTTGTCTAATGATGATTTGGCTCGTGCTTGTATCATTGCTTGGGCTACTTGGGGGATCGAAATAAAGATGTTCATTCAGCTCTTGTTCCTTCGGTGGAGGACCATTGTGAGTGGATTGTTGATTACCTAA

mRNA sequence

ATGATTTCGAAACCGGTTTCCCTTCCTTTCCAATCTGCCTGGCACTTGTTGGTTAGGGGTATGTGTAAACAAATTGGTGATGATAGGTCAAATTTGGTCTTTGAGGATCCATGGATTCCGAGACCATCCACTTTCAGGTTGTTATCACATGGGCCTGTAAATAGGGTTCAAATGGTAGCTAATCTCGTTTCTCCTTCAGCTTTGTTTGTTTGGAAGTCATGCCATGAGAGTATTCTAGCGTTTGTTCCACTACGGCATAGGGGTATAGCACTTCGTCCTTGGTGTCAGTGTGTTAATGCTAAGCATTTTAGTTGTTTAGATATATGGATTGAGTTGGGCAAGGTGTTGTCTAATGATGATTTGGCTCGTGCTTGTATCATTGCTTGGGCTACTTGGGGGATCGAAATAAAGATGTTCATTCAGCTCTTGTTCCTTCGGTGGAGGACCATTGTGAGTGGATTGTTGATTACCTAA

Coding sequence (CDS)

ATGATTTCGAAACCGGTTTCCCTTCCTTTCCAATCTGCCTGGCACTTGTTGGTTAGGGGTATGTGTAAACAAATTGGTGATGATAGGTCAAATTTGGTCTTTGAGGATCCATGGATTCCGAGACCATCCACTTTCAGGTTGTTATCACATGGGCCTGTAAATAGGGTTCAAATGGTAGCTAATCTCGTTTCTCCTTCAGCTTTGTTTGTTTGGAAGTCATGCCATGAGAGTATTCTAGCGTTTGTTCCACTACGGCATAGGGGTATAGCACTTCGTCCTTGGTGTCAGTGTGTTAATGCTAAGCATTTTAGTTGTTTAGATATATGGATTGAGTTGGGCAAGGTGTTGTCTAATGATGATTTGGCTCGTGCTTGTATCATTGCTTGGGCTACTTGGGGGATCGAAATAAAGATGTTCATTCAGCTCTTGTTCCTTCGGTGGAGGACCATTGTGAGTGGATTGTTGATTACCTAA

Protein sequence

MISKPVSLPFQSAWHLLVRGMCKQIGDDRSNLVFEDPWIPRPSTFRLLSHGPVNRVQMVANLVSPSALFVWKSCHESILAFVPLRHRGIALRPWCQCVNAKHFSCLDIWIELGKVLSNDDLARACIIAWATWGIEIKMFIQLLFLRWRTIVSGLLIT
Homology
[Close]
BLAST of Clc03G08380 vs. ExPASy TrEMBL
Match: A0A7J6HAP8 (zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_030791 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-04
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 16 LLVRGMCKQIGDDRSNLVFEDPWIPRPSTFRLLSHGPVNRVQMVANLVSPS 67
          LL++G+CK++G   + LVF+DPW+PRP+TFR       N   +V +L++ S
Sbjct: 32 LLIKGLCKRVGTGGTILVFKDPWLPRPATFRPYCSTLDNPNLLVRDLINES 82

[Close]
BLAST of Clc03G08380 vs. ExPASy TrEMBL
Match: A0A7J6EQK5 (zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_016489 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-04
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 16 LLVRGMCKQIGDDRSNLVFEDPWIPRPSTFRLLSHGPVNRVQMVANLVSPS 67
          LL++G+CK++G   + LVF+DPW+PRP+TFR       N   +V +L++ S
Sbjct: 4  LLIKGLCKRVGTGDTILVFKDPWLPRPATFRPYCSTLDNPNVLVRDLINES 54

The following BLAST results are available for this feature:
BLAST of Clc03G08380 vs.
Match NameE-valueIdentityDescription
BLAST of Clc03G08380 vs.
Match NameE-valueIdentityDescription
BLAST of Clc03G08380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6HAP89.1e-0443.14zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_030791 PE=4... [more]
A0A7J6EQK59.1e-0443.14zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_016489 PE=4... [more]
BLAST of Clc03G08380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G08380.1Clc03G08380.1mRNA