Clc03G07720 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G07720
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptiondynamin-related protein 4C-like
LocationClcChr03: 7958174 .. 7958652 (+)
RNA-Seq ExpressionClc03G07720
SyntenyClc03G07720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
atggagaaactcaccgattacacatgcaaccctgaatatggttccgagtggaaaaagttgatttcgcagcaagaatcgttcataaaaagagtggttgaaattcagctccgaaaatcacggtcgaagggtttggggatgtggaggtgggagagcttcggcagtacgagcatcttcttccacaagcgttcgatctgagagtgaggatgacagcgtactggaagatcgttctgaagagactagtggattgtatggcgcttcatcttgaatacagtatcggtaaattgataaacgaagaacttgaagcggagatcgtgaatgaactgttgggacctagcggcgtcggaatcgagaagatgctggaagaatctcctaaccttgctctgagaagggatagactcaatcggagcattgggcggctccgggagtccaaggaggtggttgccaacattcttgatcggattgcaactttcgacggatga

mRNA sequence

atggagaaactcaccgattacacatgcaaccctgaatatgctccgaaaatcacggtcgaagggtttggggatgtggaggtgggagagcttcggcagtacgagcatcttcttccacaagcgttcgatctgagagtgaggatgacagcgtactggaagatcgttctgaagagactagtggattgtatggcgcttcatcttgaatacagtatcggtaaattgataaacgaagaacttgaagcggagatcgtgaatgaactgttgggacctagcggcgtcggaatcgagaagatgctggaagaatctcctaaccttgctctgagaagggatagactcaatcggagcattgggcggctccgggagtccaaggaggtggttgccaacattcttgatcggattgcaactttcgacggatga

Coding sequence (CDS)

atggagaaactcaccgattacacatgcaaccctgaatatgctccgaaaatcacggtcgaagggtttggggatgtggaggtgggagagcttcggcagtacgagcatcttcttccacaagcgttcgatctgagagtgaggatgacagcgtactggaagatcgttctgaagagactagtggattgtatggcgcttcatcttgaatacagtatcggtaaattgataaacgaagaacttgaagcggagatcgtgaatgaactgttgggacctagcggcgtcggaatcgagaagatgctggaagaatctcctaaccttgctctgagaagggatagactcaatcggagcattgggcggctccgggagtccaaggaggtggttgccaacattcttgatcggattgcaactttcgacggatga

Protein sequence

MEKLTDYTCNPEYAPKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG
Homology
BLAST of Clc03G07720 vs. NCBI nr
Match: XP_008443645.1 (PREDICTED: dynamin-related protein 4C-like [Cucumis melo] >KAA0057070.1 dynamin-related protein 4C-like [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.2e-56
Identity = 117/159 (73.58%), Postives = 131/159 (82.39%), Query Frame = 0

Query: 1   MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLP 60
           MEKLTDYTCNPEY                      APKI +EG+G+VEVGELRQYE+LLP
Sbjct: 527 MEKLTDYTCNPEYGTERNKLISQQESFVKQVFGSSAPKIMIEGYGEVEVGELRQYEYLLP 586

Query: 61  QAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPSGVGIEKML 120
           QA+DLR+ MTAYWKIVLKRLVDCMALHLEYSI KLI+EELE+EIVNELLGP GVG+EKML
Sbjct: 587 QAYDLRMTMTAYWKIVLKRLVDCMALHLEYSIEKLIDEELESEIVNELLGPGGVGMEKML 646

Query: 121 EESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG 138
           EE+PNL+L+RD+LNRSIGRLRESK+VVAN LDRIATF G
Sbjct: 647 EEAPNLSLKRDKLNRSIGRLRESKKVVANALDRIATFVG 685

BLAST of Clc03G07720 vs. NCBI nr
Match: XP_004147422.2 (dynamin-related protein 4C [Cucumis sativus] >KGN65594.1 hypothetical protein Csa_020097 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 8.3e-56
Identity = 116/159 (72.96%), Postives = 128/159 (80.50%), Query Frame = 0

Query: 1   MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLP 60
           MEKLTDYTCNPEY                      A KIT+ G+G+VEVG LRQYE+LLP
Sbjct: 527 MEKLTDYTCNPEYGTEWNKLISQQESFVKQVNENLAQKITIVGYGEVEVGGLRQYEYLLP 586

Query: 61  QAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPSGVGIEKML 120
           QA+DLR+RMTAYWKIVLKRLVDCMALHLEYSI KLINEELE EIVNE+LGP GVGIEKML
Sbjct: 587 QAYDLRMRMTAYWKIVLKRLVDCMALHLEYSIDKLINEELEPEIVNEILGPGGVGIEKML 646

Query: 121 EESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG 138
           EESP+L L+RD+LNRS+GRLRE+KEVV NILDRIATF G
Sbjct: 647 EESPSLVLKRDKLNRSVGRLREAKEVVGNILDRIATFGG 685

BLAST of Clc03G07720 vs. NCBI nr
Match: XP_022139859.1 (LOW QUALITY PROTEIN: dynamin-related protein 4C-like [Momordica charantia])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 108/161 (67.08%), Postives = 124/161 (77.02%), Query Frame = 0

Query: 1   MEKLTDYTCNPEYAPK------------------------ITVEGFGDVEVGELRQYEHL 60
           ME LTDYTCNP+Y  K                        I++EGFG+V+VG L QY HL
Sbjct: 518 MEMLTDYTCNPQYIEKWNKLIVQQESFMKQLGNDQEMPSIISIEGFGEVQVGALSQYLHL 577

Query: 61  LPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPSGVGIEK 120
            PQAFDLR+RMTAYWKIV+KRLVDCMALHL+YSI  LIN+ELE+EIV ELLGP GVGIEK
Sbjct: 578 APQAFDLRMRMTAYWKIVIKRLVDCMALHLQYSIDNLINKELESEIVRELLGPGGVGIEK 637

Query: 121 MLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG 138
           MLEESP LA++R++L+RSIGRLRES+EVVANILDRIATF G
Sbjct: 638 MLEESPALAVKREKLSRSIGRLRESREVVANILDRIATFGG 678

BLAST of Clc03G07720 vs. NCBI nr
Match: XP_024189069.2 (dynamin-related protein 4C [Rosa chinensis])

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-42
Identity = 95/157 (60.51%), Postives = 117/157 (74.52%), Query Frame = 0

Query: 1   MEKLTDYTCNPEYA----------------------PKITVEGFGDVEVGELRQYEHLLP 60
           ME LTDYTCNPEY                        KI VEG G+VEVG LRQY  +L 
Sbjct: 572 MENLTDYTCNPEYVSECSRLMGQQGTFIHLVLNKNHSKIDVEGIGEVEVGVLRQYPQVLS 631

Query: 61  QAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPS-GVGIEKM 120
           QAFDL+VRMTAYWK+VL+RLVDCMALHL+ S+ KL+N+E+E+EIVNEL+GP+ G GIEKM
Sbjct: 632 QAFDLKVRMTAYWKVVLRRLVDCMALHLQLSVSKLVNQEMESEIVNELMGPNCGGGIEKM 691

Query: 121 LEESPNLALRRDRLNRSIGRLRESKEVVANILDRIAT 135
           LEESP +A++R++L +SI +LR+SKEVVA ILD +AT
Sbjct: 692 LEESPAVAIKREKLIKSIKKLRDSKEVVAKILDGVAT 728

BLAST of Clc03G07720 vs. NCBI nr
Match: XP_024189060.1 (dynamin-related protein 4C [Rosa chinensis] >PRQ55667.1 putative dynamin central domain, dynamin, GTPase domain, GTPase effector domain, Dynamin superfamily [Rosa chinensis])

HSP 1 Score: 181.8 bits (460), Expect = 4.0e-42
Identity = 94/157 (59.87%), Postives = 117/157 (74.52%), Query Frame = 0

Query: 1   MEKLTDYTCNPEYA----------------------PKITVEGFGDVEVGELRQYEHLLP 60
           ME LTDYTCNPEY                        KI VEG G+VEVG LRQY  +L 
Sbjct: 510 MENLTDYTCNPEYVSECSRLMGQQGTFIHLVLNEYHSKIDVEGIGEVEVGVLRQYPQVLS 569

Query: 61  QAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPS-GVGIEKM 120
           QAFDL++RMTAYWK+VL+RLVDCMALHL+ S+ KL+N+E+E+EIVNEL+GP+ G GIEKM
Sbjct: 570 QAFDLKMRMTAYWKVVLRRLVDCMALHLQLSVSKLVNQEMESEIVNELMGPNCGGGIEKM 629

Query: 121 LEESPNLALRRDRLNRSIGRLRESKEVVANILDRIAT 135
           LEESP +A++R++L +SI +LR+SKEVVA ILD +AT
Sbjct: 630 LEESPAVAIKREKLIKSIKKLRDSKEVVAKILDGVAT 666

BLAST of Clc03G07720 vs. ExPASy Swiss-Prot
Match: Q9ZP55 (Dynamin-related protein 4C OS=Arabidopsis thaliana OX=3702 GN=DRP4C PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-30
Identity = 73/157 (46.50%), Postives = 101/157 (64.33%), Query Frame = 0

Query: 1   MEKLTDYTCNPEYAPKIT------------------------VEGFGDVEVGELRQYE-H 60
           MEKLTDYTCNPEY    T                        V GFG+V++  LR+Y  H
Sbjct: 511 MEKLTDYTCNPEYMTSWTQKTSAQESFIDAVVKNENIPDYFSVTGFGNVKISHLRKYHAH 570

Query: 61  LLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGP-SGVGI 120
           LL  AFD+++R+T+YWKIVL+R+VD +AL+L+ S+  L+N   + EIV E++ P  G G+
Sbjct: 571 LLIPAFDMKMRITSYWKIVLRRIVDNLALYLQLSVKSLVNTRFQKEIVAEMVDPRDGGGV 630

Query: 121 EKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDR 132
           EKMLEESP +A +R++L  SI  L+ESK+ VA I+D+
Sbjct: 631 EKMLEESPLVASKREKLQNSIKLLKESKDAVAAIVDQ 667

BLAST of Clc03G07720 vs. ExPASy TrEMBL
Match: A0A5A7UPN5 (Dynamin-related protein 4C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002610 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 117/159 (73.58%), Postives = 131/159 (82.39%), Query Frame = 0

Query: 1   MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLP 60
           MEKLTDYTCNPEY                      APKI +EG+G+VEVGELRQYE+LLP
Sbjct: 527 MEKLTDYTCNPEYGTERNKLISQQESFVKQVFGSSAPKIMIEGYGEVEVGELRQYEYLLP 586

Query: 61  QAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPSGVGIEKML 120
           QA+DLR+ MTAYWKIVLKRLVDCMALHLEYSI KLI+EELE+EIVNELLGP GVG+EKML
Sbjct: 587 QAYDLRMTMTAYWKIVLKRLVDCMALHLEYSIEKLIDEELESEIVNELLGPGGVGMEKML 646

Query: 121 EESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG 138
           EE+PNL+L+RD+LNRSIGRLRESK+VVAN LDRIATF G
Sbjct: 647 EEAPNLSLKRDKLNRSIGRLRESKKVVANALDRIATFVG 685

BLAST of Clc03G07720 vs. ExPASy TrEMBL
Match: A0A1S3B818 (dynamin-related protein 4C-like OS=Cucumis melo OX=3656 GN=LOC103487189 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 117/159 (73.58%), Postives = 131/159 (82.39%), Query Frame = 0

Query: 1   MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLP 60
           MEKLTDYTCNPEY                      APKI +EG+G+VEVGELRQYE+LLP
Sbjct: 527 MEKLTDYTCNPEYGTERNKLISQQESFVKQVFGSSAPKIMIEGYGEVEVGELRQYEYLLP 586

Query: 61  QAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPSGVGIEKML 120
           QA+DLR+ MTAYWKIVLKRLVDCMALHLEYSI KLI+EELE+EIVNELLGP GVG+EKML
Sbjct: 587 QAYDLRMTMTAYWKIVLKRLVDCMALHLEYSIEKLIDEELESEIVNELLGPGGVGMEKML 646

Query: 121 EESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG 138
           EE+PNL+L+RD+LNRSIGRLRESK+VVAN LDRIATF G
Sbjct: 647 EEAPNLSLKRDKLNRSIGRLRESKKVVANALDRIATFVG 685

BLAST of Clc03G07720 vs. ExPASy TrEMBL
Match: A0A0A0LX52 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467140 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.0e-56
Identity = 116/159 (72.96%), Postives = 128/159 (80.50%), Query Frame = 0

Query: 1   MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLP 60
           MEKLTDYTCNPEY                      A KIT+ G+G+VEVG LRQYE+LLP
Sbjct: 527 MEKLTDYTCNPEYGTEWNKLISQQESFVKQVNENLAQKITIVGYGEVEVGGLRQYEYLLP 586

Query: 61  QAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPSGVGIEKML 120
           QA+DLR+RMTAYWKIVLKRLVDCMALHLEYSI KLINEELE EIVNE+LGP GVGIEKML
Sbjct: 587 QAYDLRMRMTAYWKIVLKRLVDCMALHLEYSIDKLINEELEPEIVNEILGPGGVGIEKML 646

Query: 121 EESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG 138
           EESP+L L+RD+LNRS+GRLRE+KEVV NILDRIATF G
Sbjct: 647 EESPSLVLKRDKLNRSVGRLREAKEVVGNILDRIATFGG 685

BLAST of Clc03G07720 vs. ExPASy TrEMBL
Match: A0A6J1CE52 (LOW QUALITY PROTEIN: dynamin-related protein 4C-like OS=Momordica charantia OX=3673 GN=LOC111010670 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.1e-51
Identity = 108/161 (67.08%), Postives = 124/161 (77.02%), Query Frame = 0

Query: 1   MEKLTDYTCNPEYAPK------------------------ITVEGFGDVEVGELRQYEHL 60
           ME LTDYTCNP+Y  K                        I++EGFG+V+VG L QY HL
Sbjct: 518 MEMLTDYTCNPQYIEKWNKLIVQQESFMKQLGNDQEMPSIISIEGFGEVQVGALSQYLHL 577

Query: 61  LPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPSGVGIEK 120
            PQAFDLR+RMTAYWKIV+KRLVDCMALHL+YSI  LIN+ELE+EIV ELLGP GVGIEK
Sbjct: 578 APQAFDLRMRMTAYWKIVIKRLVDCMALHLQYSIDNLINKELESEIVRELLGPGGVGIEK 637

Query: 121 MLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG 138
           MLEESP LA++R++L+RSIGRLRES+EVVANILDRIATF G
Sbjct: 638 MLEESPALAVKREKLSRSIGRLRESREVVANILDRIATFGG 678

BLAST of Clc03G07720 vs. ExPASy TrEMBL
Match: A0A2P6SAG1 (Putative dynamin central domain, dynamin, GTPase domain, GTPase effector domain, Dynamin superfamily OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0327111 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-42
Identity = 94/157 (59.87%), Postives = 117/157 (74.52%), Query Frame = 0

Query: 1   MEKLTDYTCNPEYA----------------------PKITVEGFGDVEVGELRQYEHLLP 60
           ME LTDYTCNPEY                        KI VEG G+VEVG LRQY  +L 
Sbjct: 510 MENLTDYTCNPEYVSECSRLMGQQGTFIHLVLNEYHSKIDVEGIGEVEVGVLRQYPQVLS 569

Query: 61  QAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPS-GVGIEKM 120
           QAFDL++RMTAYWK+VL+RLVDCMALHL+ S+ KL+N+E+E+EIVNEL+GP+ G GIEKM
Sbjct: 570 QAFDLKMRMTAYWKVVLRRLVDCMALHLQLSVSKLVNQEMESEIVNELMGPNCGGGIEKM 629

Query: 121 LEESPNLALRRDRLNRSIGRLRESKEVVANILDRIAT 135
           LEESP +A++R++L +SI +LR+SKEVVA ILD +AT
Sbjct: 630 LEESPAVAIKREKLIKSIKKLRDSKEVVAKILDGVAT 666

BLAST of Clc03G07720 vs. TAIR 10
Match: AT1G60500.1 (Dynamin related protein 4C )

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-31
Identity = 73/157 (46.50%), Postives = 101/157 (64.33%), Query Frame = 0

Query: 1   MEKLTDYTCNPEYAPKIT------------------------VEGFGDVEVGELRQYE-H 60
           MEKLTDYTCNPEY    T                        V GFG+V++  LR+Y  H
Sbjct: 511 MEKLTDYTCNPEYMTSWTQKTSAQESFIDAVVKNENIPDYFSVTGFGNVKISHLRKYHAH 570

Query: 61  LLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGP-SGVGI 120
           LL  AFD+++R+T+YWKIVL+R+VD +AL+L+ S+  L+N   + EIV E++ P  G G+
Sbjct: 571 LLIPAFDMKMRITSYWKIVLRRIVDNLALYLQLSVKSLVNTRFQKEIVAEMVDPRDGGGV 630

Query: 121 EKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDR 132
           EKMLEESP +A +R++L  SI  L+ESK+ VA I+D+
Sbjct: 631 EKMLEESPLVASKREKLQNSIKLLKESKDAVAAIVDQ 667

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008443645.12.2e-5673.58PREDICTED: dynamin-related protein 4C-like [Cucumis melo] >KAA0057070.1 dynamin-... [more]
XP_004147422.28.3e-5672.96dynamin-related protein 4C [Cucumis sativus] >KGN65594.1 hypothetical protein Cs... [more]
XP_022139859.11.0e-5067.08LOW QUALITY PROTEIN: dynamin-related protein 4C-like [Momordica charantia][more]
XP_024189069.21.8e-4260.51dynamin-related protein 4C [Rosa chinensis][more]
XP_024189060.14.0e-4259.87dynamin-related protein 4C [Rosa chinensis] >PRQ55667.1 putative dynamin central... [more]
Match NameE-valueIdentityDescription
Q9ZP553.6e-3046.50Dynamin-related protein 4C OS=Arabidopsis thaliana OX=3702 GN=DRP4C PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7UPN51.1e-5673.58Dynamin-related protein 4C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A1S3B8181.1e-5673.58dynamin-related protein 4C-like OS=Cucumis melo OX=3656 GN=LOC103487189 PE=4 SV=... [more]
A0A0A0LX524.0e-5672.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467140 PE=4 SV=1[more]
A0A6J1CE525.1e-5167.08LOW QUALITY PROTEIN: dynamin-related protein 4C-like OS=Momordica charantia OX=3... [more]
A0A2P6SAG11.9e-4259.87Putative dynamin central domain, dynamin, GTPase domain, GTPase effector domain,... [more]
Match NameE-valueIdentityDescription
AT1G60500.12.6e-3146.50Dynamin related protein 4C [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003130Dynamin GTPase effectorSMARTSM00302GED_2coord: 32..128
e-value: 0.0046
score: 24.5
IPR003130Dynamin GTPase effectorPFAMPF02212GEDcoord: 41..127
e-value: 1.6E-10
score: 41.0
NoneNo IPR availableGENE3D1.20.120.1240Dynamin, middle domaincoord: 1..108
e-value: 5.5E-9
score: 37.7
NoneNo IPR availablePANTHERPTHR11566:SF202BNAC01G28600D PROTEINcoord: 1..131
IPR022812DynaminPANTHERPTHR11566DYNAMINcoord: 1..131
IPR020850GTPase effector domainPROSITEPS51388GEDcoord: 40..133
score: 19.845585

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G07720.1Clc03G07720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016020 membrane
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0008017 microtubule binding